TCONS_00027269 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027269
Unique NameTCONS_00027269
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length678

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027269 ID=TCONS_00027269|Name=TCONS_00027269|organism=Clytia hemisphaerica|type=transcript|length=678bp
CCTTGGTTGTAGAGATGGTGGCTCCTTAAAATCTCACCACGATCTCTGTT
TGATGATGGTAACCTTTGCGGATTTGCTTTATACTTATCGTCAACCTCAA
CGTTTGAAAGCAAATTGCAAAGGTCGTCATCACCGATGTGGCGTTCATTG
CACATTTCCTCAGAACGAAtgatgaataaaaaaacaaaaattatgtgTTT
ACAGGAAACAACCAACCCTTGCTTTTTAAAATCGGGACATGTACATGTAG
GTACATTGCATATAGTTACTGTGTAATGTACCCTTCCGGAAGATGTTCCC
AATATCTGACACTCGATTTTTTGAGACGATAGCCGAGTTAACTTTTTAAC
CTTCATCATATCCTCCAACTTTTTTGCAGTTTCAAGTCTATTGTCAAATA
ACTTTCCAATGTTTCTTCGCTTTTTGGGTGGGTGACAGCCCTCCACCGGC
TCACAAGATTTTCGCTTTCCACTACTTCCAGTCTGCTGAACTGTAAAATC
CATCAGATCCCGACCAAGTCTTTCAGCATGCCCAATATCTCTTGATGCTT
GTTGTTTGTTTCTTGAAGAAATGGACTGACCATATCCACATTCGTGTCCC
CCCTTTTCAAGCTCTCCAAGGTTGAGTGCTAAAAGGATACTGTCCCTTAT
ATCAAAATATGCGCATTCAAGAAGGTTG
Run BLAST on NCBI

protein sequence of TCONS_00027269-protein

>TCONS_00027269-protein ID=TCONS_00027269-protein|Name=TCONS_00027269-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
NLLECAYFDIRDSILLALNLGELEKGGHECGYGQSISSRNKQQASRDIGH
AERLGRDLMDFTVQQTGSSGKRKSCEPVEGCHPPKKRRNIGKLFDNRLET
AKKLEDMMKVKKLTRLSSQKIECQILGTSSGRVHYTVTICNVPTCTCPDF
KKQGLVVSCKHIIFVFLFIIRSEEMCNERHIGDDDLCNLLSNVEVDDKYK
ANPQRLPSSNRDRGEILRSHHLYNQ
Run BLAST on NCBI

transcript from alignment at sc0000612:92589..93266

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027269 ID=TCONS_00027269|Name=TCONS_00027269|organism=Clytia hemisphaerica|type=transcript|length=678bp|location=Sequence derived from alignment at sc0000612:92589..93266 (Clytia hemisphaerica)
CAACCTTCTTGAATGCGCATATTTTGATATAAGGGACAGTATCCTTTTAG
CACTCAACCTTGGAGAGCTTGAAAAGGGGGGACACGAATGTGGATATGGT
CAGTCCATTTCTTCAAGAAACAAACAACAAGCATCAAGAGATATTGGGCA
TGCTGAAAGACTTGGTCGGGATCTGATGGATTTTACAGTTCAGCAGACTG
GAAGTAGTGGAAAGCGAAAATCTTGTGAGCCGGTGGAGGGCTGTCACCCA
CCCAAAAAGCGAAGAAACATTGGAAAGTTATTTGACAATAGACTTGAAAC
TGCAAAAAAGTTGGAGGATATGATGAAGGTTAAAAAGTTAACTCGGCTAT
CGTCTCAAAAAATCGAGTGTCAGATATTGGGAACATCTTCCGGAAGGGTA
CATTACACAGTAACTATATGCAATGTACCTACATGTACATGTCCCGATTT
TAAAAAGCAAGGGTTGGTTGTTTCCTGTAAAcacataatttttgtttttt
tattcatcaTTCGTTCTGAGGAAATGTGCAATGAACGCCACATCGGTGAT
GACGACCTTTGCAATTTGCTTTCAAACGTTGAGGTTGACGATAAGTATAA
AGCAAATCCGCAAAGGTTACCATCATCAAACAGAGATCGTGGTGAGATTT
TAAGGAGCCACCATCTCTACAACCAAGG

Coding sequence (CDS) from alignment at sc0000612:92589..93266

>TCONS_00027269 ID=TCONS_00027269|Name=TCONS_00027269|organism=Clytia hemisphaerica|type=CDS|length=675bp|location=Sequence derived from alignment at sc0000612:92589..93266 (Clytia hemisphaerica)
AACCTTCTTGAATGCGCATATTTTGATATAAGGGACAGTATCCTTTTAGC
ACTCAACCTTGGAGAGCTTGAAAAGGGGGGACACGAATGTGGATATGGTC
AGTCCATTTCTTCAAGAAACAAACAACAAGCATCAAGAGATATTGGGCAT
GCTGAAAGACTTGGTCGGGATCTGATGGATTTTACAGTTCAGCAGACTGG
AAGTAGTGGAAAGCGAAAATCTTGTGAGCCGGTGGAGGGCTGTCACCCAC
CCAAAAAGCGAAGAAACATTGGAAAGTTATTTGACAATAGACTTGAAACT
GCAAAAAAGTTGGAGGATATGATGAAGGTTAAAAAGTTAACTCGGCTATC
GTCTCAAAAAATCGAGTGTCAGATATTGGGAACATCTTCCGGAAGGGTAC
ATTACACAGTAACTATATGCAATGTACCTACATGTACATGTCCCGATTTT
AAAAAGCAAGGGTTGGTTGTTTCCTGTAAAcacataatttttgttttttt
attcatcaTTCGTTCTGAGGAAATGTGCAATGAACGCCACATCGGTGATG
ACGACCTTTGCAATTTGCTTTCAAACGTTGAGGTTGACGATAAGTATAAA
GCAAATCCGCAAAGGTTACCATCATCAAACAGAGATCGTGGTGAGATTTT
AAGGAGCCACCATCTCTACAACCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015346XLOC_015346Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027269-proteinTCONS_00027269-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027269-exon-sc0000612-1491911889:92589..93266TCONS_00027269-exon-sc0000612-1491911889:92589..93266Clytia hemisphaericaexon
TCONS_00027269-exon-sc0000612-1510915933:92589..93266TCONS_00027269-exon-sc0000612-1510915933:92589..93266Clytia hemisphaericaexon
TCONS_00027269-exon-sc0000612-1575043694:92589..93266TCONS_00027269-exon-sc0000612-1575043694:92589..93266Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000612supercontigsc0000612:92589..93266 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.360903	0.145661	0.127169	0	0.629759	0.93158	1.35048	0.258547	0.322929	0.35181	0.386087	0	0.100619	0	1.43163	0.637489	0.481368	0.631417	0.331213	0.209855	0.483838	0.721339	0.298602	0.244699	0	0	0.431856	0.0202497	0.486421	0.432952
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007527Znf_SWIM
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027269 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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