TCONS_00027246 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027246
Unique NameTCONS_00027246
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length411

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027246 ID=TCONS_00027246|Name=TCONS_00027246|organism=Clytia hemisphaerica|type=transcript|length=411bp
CTTTTTGTTTGAGGGATTCCTACCTGGGGGCTAACAGAGTTTTTGTTTAC
CGGGATTTCATGTACATTCTTCAAGCGCACCTCTCACGCTCTGGGCTCTC
ACACCGTCAATATGGGTCACACTCATTTAGACGTGGTGGGGCTACCTTTG
CTTTGGAGGCTGGTGTGCCTCTTGACTCCATTGCAGTTATGGGTGACTGG
AAGTCTGATGCAATGTATCTTTACTTACATATGCCCTTGTCGCAGCGTTT
GCATGCCCAGCATTCTATTTCTTCATATATTTCTTCTTTATCTACCAACT
AATACACACATTGGATTTGgacatttgttttattttcctagtttatattc
ctgtacatattttgtctgtgcctTTTTCACAGTGTTTATTCCGTCAAGAA
CTCAAAATACC
Run BLAST on NCBI

protein sequence of TCONS_00027246-protein

>TCONS_00027246-protein ID=TCONS_00027246-protein|Name=TCONS_00027246-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
FCLRDSYLGANRVFVYRDFMYILQAHLSRSGLSHRQYGSHSFRRGGATFA
LEAGVPLDSIAVMGDWKSDAMYLYLHMPLSQRLHAQHSISSYISSLSTN
Run BLAST on NCBI

transcript from alignment at sc0000611:63630..64040

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027246 ID=TCONS_00027246|Name=TCONS_00027246|organism=Clytia hemisphaerica|type=transcript|length=411bp|location=Sequence derived from alignment at sc0000611:63630..64040 (Clytia hemisphaerica)
GGTATTTTGAGTTCTTGACGGAATAAACACTGTGAAAAaggcacagacaa
aatatgtacaggaatataaactaggaaaataaaacaaatgtcCAAATCCA
ATGTGTGTATTAGTTGGTAGATAAAGAAGAAATATATGAAGAAATAGAAT
GCTGGGCATGCAAACGCTGCGACAAGGGCATATGTAAGTAAAGATACATT
GCATCAGACTTCCAGTCACCCATAACTGCAATGGAGTCAAGAGGCACACC
AGCCTCCAAAGCAAAGGTAGCCCCACCACGTCTAAATGAGTGTGACCCAT
ATTGACGGTGTGAGAGCCCAGAGCGTGAGAGGTGCGCTTGAAGAATGTAC
ATGAAATCCCGGTAAACAAAAACTCTGTTAGCCCCCAGGTAGGAATCCCT
CAAACAAAAAG

Coding sequence (CDS) from alignment at sc0000611:63630..64040

>TCONS_00027246 ID=TCONS_00027246|Name=TCONS_00027246|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at sc0000611:63630..64040 (Clytia hemisphaerica)
TTAGTTGGTAGATAAAGAAGAAATATATGAAGAAATAGAATGCTGGGCAT
GCAAACGCTGCGACAAGGGCATATGTAAGTAAAGATACATTGCATCAGAC
TTCCAGTCACCCATAACTGCAATGGAGTCAAGAGGCACACCAGCCTCCAA
AGCAAAGGTAGCCCCACCACGTCTAAATGAGTGTGACCCATATTGACGGT
GTGAGAGCCCAGAGCGTGAGAGGTGCGCTTGAAGAATGTACATGAAATCC
CGGTAAACAAAAACTCTGTTAGCCCCCAGGTAGGAATCCCTCAAACAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015325XLOC_015325Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027246-proteinTCONS_00027246-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027246-exon-sc0000611-1491911889:63630..64040TCONS_00027246-exon-sc0000611-1491911889:63630..64040Clytia hemisphaericaexon
TCONS_00027246-exon-sc0000611-1510915933:63630..64040TCONS_00027246-exon-sc0000611-1510915933:63630..64040Clytia hemisphaericaexon
TCONS_00027246-exon-sc0000611-1575043694:63630..64040TCONS_00027246-exon-sc0000611-1575043694:63630..64040Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000611supercontigsc0000611:63630..64040 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.70253	0.856346	1.28129	0	12.7899	7.11216	12.4192	12.0495	4.3364	7.07699	4.80436	3.81492	5.95719	7.06889	3.56367	2.14051	4.32995	3.5136	1.30691	0.976846	1.65945	2.42625	0.247661	0.808379	11.8621	12.5468	1.59503	1.5421	0.303504	1.44842
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013762Integrase-like_cat
IPR011010DNA_brk_join_enz
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006310 DNA recombination
molecular_function GO:0003677 DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027246 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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