TCONS_00027239 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027239
Unique NameTCONS_00027239
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length571

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027239 ID=TCONS_00027239|Name=TCONS_00027239|organism=Clytia hemisphaerica|type=transcript|length=571bp
GGCCTCTATGAATCGCTCATACATTTTGGGTTAATTATTTACATTGTTAA
TATAGACAGgtatgcaacaatagtgacacTTTCAATCATATTCAAACTTT
TTAGCTTTCCAGGCCACACTAAGGGTCTCTTTAAATTCTTCCACTGAGGA
TGAGTTGACTACTTTAGAAGGCAAACTATTCCACTGCTTAATACCCCGAT
AGTATAGGGAGTTACTCTGTGGACCGCGAACACCATCGTTCCCAAAGATT
ACTACTAATTCAGAGTCGTGCGTTCTCTCCCTCGCTGGTTAAATTTCTTA
GGGATGCAAGATTTGTCATAGTAGTTTAGATGTTTAAAGATCTCAACCAT
GTCACTTACCTCGCGTCTGTATTTTAGACTAGTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgttttacaaattcgcaggc
caccgtgctTGTGACCAGATAACCTGGGCGTATTCTAAGTGTGGTCTGAC
AAATGTTACGTATAGTTTTCGAAACAGTTCTGGAGTGAGGTACGTGAAGG
TCCGCCTGATAAGACCAGCCA
Run BLAST on NCBI

transcript from alignment at sc0000611:10574..11144

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027239 ID=TCONS_00027239|Name=TCONS_00027239|organism=Clytia hemisphaerica|type=transcript|length=571bp|location=Sequence derived from alignment at sc0000611:10574..11144 (Clytia hemisphaerica)
TGGCTGGTCTTATCAGGCGGACCTTCACGTACCTCACTCCAGAACTGTTT
CGAAAACTATACGTAACATTTGTCAGACCACACTTAGAATACGCCCAGGT
TATCTGGTCACAagcacggtggcctgcgaatttgtaaaacaNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTAGTCTAAAA
TACAGACGCGAGGTAAGTGACATGGTTGAGATCTTTAAACATCTAAACTA
CTATGACAAATCTTGCATCCCTAAGAAATTTAACCAGCGAGGGAGAGAAC
GCACGACTCTGAATTAGTAGTAATCTTTGGGAACGATGGTGTTCGCGGTC
CACAGAGTAACTCCCTATACTATCGGGGTATTAAGCAGTGGAATAGTTTG
CCTTCTAAAGTAGTCAACTCATCCTCAGTGGAAGAATTTAAAGAGACCCT
TAGTGTGGCCTGGAAAGCTAAAAAGTTTGAATATGATTGAAAgtgtcact
attgttgcatacCTGTCTATATTAACAATGTAAATAATTAACCCAAAATG
TATGAGCGATTCATAGAGGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015318XLOC_015318Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027239-exon-sc0000611-1491911889:10574..11144TCONS_00027239-exon-sc0000611-1491911889:10574..11144Clytia hemisphaericaexon
TCONS_00027239-exon-sc0000611-1510915933:10574..11144TCONS_00027239-exon-sc0000611-1510915933:10574..11144Clytia hemisphaericaexon
TCONS_00027239-exon-sc0000611-1575043694:10574..11144TCONS_00027239-exon-sc0000611-1575043694:10574..11144Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000611supercontigsc0000611:10574..11144 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.827563	0	2.44197	1.88921	0.173362	0.219518	0	0.618214	0.489793	0.18163	3.48671	0.705247	1.21215	2.03161	0.606358	0.866329	0.315471	0.939826	1.29534	0.848063	0.958281	0.63225	0.979327	0.347289	0.778978	0.310228	1.98271	0	0	0.962379
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027239 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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