TCONS_00027238 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027238
Unique NameTCONS_00027238
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length224

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027238 ID=TCONS_00027238|Name=TCONS_00027238|organism=Clytia hemisphaerica|type=transcript|length=224bp
TGAAATACTACAGATTATTCAGTGCCATCTACAAAACCTCTATAGAAGGG
AGGCTGCGTACCAGAAATATACATTTTAACAATATAAATATGAAAAACTA
TGTTCGAGAGGCCTTGAAGTGTCACGGGAATAGGCCACTTGATGTCAGAT
TAATATTGTACATTCGATACAATGAAAGACGTCTTATGCTGGGCCGTAAT
GCCGCCAGGctacttgtttttctt
Run BLAST on NCBI

transcript from alignment at sc0000611:6438..6661

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027238 ID=TCONS_00027238|Name=TCONS_00027238|organism=Clytia hemisphaerica|type=transcript|length=224bp|location=Sequence derived from alignment at sc0000611:6438..6661 (Clytia hemisphaerica)
aagaaaaacaagtagCCTGGCGGCATTACGGCCCAGCATAAGACGTCTTT
CATTGTATCGAATGTACAATATTAATCTGACATCAAGTGGCCTATTCCCG
TGACACTTCAAGGCCTCTCGAACATAGTTTTTCATATTTATATTGTTAAA
ATGTATATTTCTGGTACGCAGCCTCCCTTCTATAGAGGTTTTGTAGATGG
CACTGAATAATCTGTAGTATTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015317XLOC_015317Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027238-exon-sc0000611-1491911889:6438..6661TCONS_00027238-exon-sc0000611-1491911889:6438..6661Clytia hemisphaericaexon
TCONS_00027238-exon-sc0000611-1510915933:6438..6661TCONS_00027238-exon-sc0000611-1510915933:6438..6661Clytia hemisphaericaexon
TCONS_00027238-exon-sc0000611-1575043694:6438..6661TCONS_00027238-exon-sc0000611-1575043694:6438..6661Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000611supercontigsc0000611:6438..6661 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.57052	5.00149	0	3.01593	12.5355	13.6204	13.4447	26.5721	81.3051	65.8655	9.71402	35.8889	8.48721	6.25844	5.61188	1.59836	1.74453	0.894042	1.23517	3.87754	5.59068	0	0	3.47333	7.87366	8.90707	0	8.58575	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027238 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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