|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027233 ID=TCONS_00027233|Name=TCONS_00027233|organism=Clytia hemisphaerica|type=transcript|length=3462bp
AGATCagaagatataagcccttaaagtttgaactagcaatttttaaaaaa
aaacttagaaaaaaggaccctggcactcaaagggttaaacgAGAACACGG
ATAAATCCTTAGATTTTATGTTATACTTAGAGCATATCAAAAACGCAGTT
TTCCGTGACGAAACAACGATAAAGAGTTctacatttaaaaattttatgct
TGCATATGATTCGTTTGTATGGATGCAAAACTTTAACTTTCATGAAACAA
ACGTCGAAAATTTAATTATTAGTCGAGACTCGTCTTTAACAATTAGCAGA
TTTGAATTGCACAATACAACAATAAACGAATGGGCATGCTTTTTATGGAA
TAGCAATTACAATGTAAATGAAGCTCGAGTTGTGGACAGTGTTCTGAAGA
TGCGTCTCGTCAGTTCTCTAATATCGAGTAATGTAACAATTCAAAGCATC
GAATTGCAGAATACAACAGTTTATGGATCTGCATTCTTCGTATCGGAAAG
CATCTTCAAGGCAAATGAAATCCGAGTGGTTGACTGTGTTATGGAAGAGA
CATTCTACGTATGGGGAGGCATCTTCAACGCAAATAAAATCCGAATTGTT
GACTCTACATTACTAGGATTGGTGTATTTAAGAACTAAAAGTAATATCAC
CATAAAATATATATCTATGAACAAGACtgatataaaagaaacatttgTCG
CTTCATATGAATTCAGTAAATCCACGATTACAAATGTAACGATTCACGAA
AGTAGGATTATAGGTAGAATGTTTTACCTTGCAGAAAGAAGTAatgttat
acttaaaaatgcaACAATATTTGACACTAAAATCGGTCAAGATATGTTTT
ACTTGTATGAAAGCACGGTAACACTAGAGCAATTTATCATCATACGTTGC
GATATTTATTGCGCTTTTAAAGCAATTGAGAGTGTCAAAAAACTTGGATT
AGGTATTAAGTCggagtttttcaaaagtaaccTCACTGTTTTGGATTTCA
GGCTTAATGATAGCCGTCTGCAGGAAAATTTATTCAATCTAAAATATGCA
AATATTTATTTGGAAGggattgaaattaaaaacagttATATAGATAAAAG
TATATTGGATATTGAAAAATCTACTGTTAAACTTCGAGGATTTAGTTTAA
TAAACAATACCACTCCAAACTTTGCTATTCAAATGAATAGAGTCGAAACT
GCTACTTGTGAAAATTTTACCACACATGGAAATACTTTTTTAACTTTGAT
GAGAATTCAATCATCATACTTCAAAATCTCGAACTTCAAATCAGTTCGTG
ATAATACTGAAGGAAAAATAGCTATCTTTGAcgttgaattttcagattta
taTTTGACGAACAGTATGTTTACATTAAATTCCATTGCTATAGGTAGCCA
AATAATGAATTCAAAGCAAAGCACCatttattttacaaaagttGACATCG
TGCTACCGAAATCATTGTCCGAGGAACTCAAAGtttggaaaatgtttgga
aaacatcgtgggaaaatcaaaaacttttcaacCGTATGCGGAAATCATTT
CAACCCTCAAATAAAAAGACTTAAATTATCGACAGAAATTGTTTGCAACA
GATGTCCATCAGCTCAATACTCAATGTCAATTGGaaattttcttataact
ttTTTAGAAAGTATGAGCAAATTGGCAAATAAAACAAATGCCATTAAACT
CAGCAAAATTGCACAGATTGAAAAAGTAACATGTAAAATCTGCCCGACAG
GTTCTCGCTGTCCAGATAACGAGTTAATAGCACGTGACAATTTCCATGGC
TTCTATGAAAATAAAACAGCGGATTACCGATTCCTTTTATGTCCCGAAAG
ATACTGTTGTTCATCAACTACAAGAAATTGCAAGTCGCCAACAACTTGCA
ATCTAAATCGAGAAGGAAGACTTTGTGGCAAATGTGAAGAAGGTTACTTC
ATCAGTTTCTTCAATAATAAATGTATCAACATTTCTGAATGTACCAATGG
AAGTCAACATTCTTTCTGGACCCTATTTTTCACTTCTTTCATCGCTTTGG
CTGTGCTGTTAACATTTCTTAAAGATCTCATCACTGCAATCAAATGTGCT
GGGCCGATAATAATGGCATGTTTATGGAAAACTCGcgcaaagaaaaaaga
agaagatgcCAACGAGATCGATGAAATGGAAGAACTACAACCAGGAGACA
ACCGAAGAAAACGTAAAGAGATTTCCACATCATCAATCTTCAATATTTTG
GTCTCTTTTTTTCAGTTGAAAGCTTTGATAACAGTTCAGAGCAATGAGAA
AACATTAATCGATAAACTTATGAACATGGATATTGTGGTTAAAAGTAGTG
AAGCTTTAGATGCACTCTGTCCTTTCAGGGGGTTTAATGTTGTATGGCGA
GAGGTTTTAAACGGATACACGATTCCATTTTTATTGTTAATGACTATTGC
AACTTTACACTTGATTGTAAAACTCTTGAAACACTTTCGACCATCAAGTT
TAAGATTAACATGGTTGATAACGAGATTTTGTGTTGGGTATTATATCATC
ATCGCTTTTTGCTACAAGAATATCTGCAGAACAGTCTTTATGCTTTTGAA
CTGCAAAACAATGAATGAAGTAACATTCTTATACATGGACGGTACTGttg
aatgtttttctttgtgGCAGGTGGCAAATATGTTATTCTTGGTATGTTGG
GTTGTTCCTTTCCCATTTGCAGTCGTTTTGGGCTACTAcctctttaaaaa
caaaaagatttctgTGACGACGTTTCTCATATTTTTAATGTTCCCAATGT
TTTGTATTGTGAGAACTTGTTTCTCAAGATGGAAAAGAACTGTCGAGACT
GACAGGAGCGATTTCATTGGCAACAGGCTCGCAGAAATATTCGAAGAGCC
CTACAGAGAGAAATTCTTTTGGTGGGAATCTTGGCGACTTATCGAACGTT
TTATTGTTTCTGGCATAGCAGTATTTCTGACGAACCCTATCTATCGCATT
TTATACCTGACCCCCGTCTTTGCTTCCTTATCGTATTTCCACTTTCGAAT
GAATCCATATAAACGTTCGATGTATATTCTAAAAAGATTAGATACGGTTT
CCTGGTTTTGTTTATTCATTCTTTTGTTCATCAATGGGATGCGAGCTGTT
GTTTACATTTATGATGTACCTAATATCGATTTTATAAGCCATGCACTAGA
AGCTGCTAACATATTGGAGAATTTATTTTCTCCACTCTGGTATCTTATTA
TTTCATTCATTCTTAAGAAGTTGagtgaaaatcttttaaatttttaaatt
tcatatgATGGAAACTTTTTTAGCAGTGCTAGCCTTTAAGTATTTTTAAG
ACAAATACTGATTAGAgcgtactcttaggtgcctaataaacgccccccgc
ttgtttattttttgatttcttttccaACCCTGGAAAATTTATAACCTTAG
TAGGACCCTCCG Run BLAST on NCBI transcript from alignment at sc0000611:167693..172518- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027233 ID=TCONS_00027233|Name=TCONS_00027233|organism=Clytia hemisphaerica|type=transcript|length=4826bp|location=Sequence derived from alignment at sc0000611:167693..172518- (Clytia hemisphaerica)
AGATCAGAAGATATAAGCCCTTAAAGTTTGAACTAGCAATTTTTAAAAAA
AAACTTAGAAAAAAGGACCCTGGCACTCAAAGGGTTAAACGAGAACACGG
ATAAATCCTTAGATTTTATGTTATACTTAGAGCATATCAAAAACGCAGTT
TTCCGTGACGAAACAACGATAAAGAGTTCTACATTTAAAAATTTTATGCT
TGCATATGATTCGTTTGTATGGATGCAAAACTTTAACTTTCATGAAACAA
ACGTCGAAAATTTAATTATTAGTCGAGACTCGTCTTTAACAATTAGCAGA
TTTGAATTGCACAATACAACAATAAACGAATGGGCATGCTTTTTATGGAA
TAGCAATTACAATGTAAATGAAGCTCGAGTTGTGGACAGTGTTCTGAAGA
TGCGTCTCGTCAGTTCTCTAATATCGAGTAATGTAACAATTCAAAGCATC
GAATTGCAGAATACAACAGTTTATGGATCTGCATTCTTCGTATCGGAAAG
CATCTTCAAGGCAAATGAAATCCGAGTGGTTGACTGTGTTATGGAAGAGA
CATTCTACGTATGGGGAGGCATCTTCAACGCAAATAAAATCCGAATTGTT
GACTCTACATTACTAGGATTGGTGTATTTAAGAACTAAAAGTAATATCAC
CATAAAATATATATCTATGAACAAGACTGATATAAAAGAAACATTTGTCG
CTTCATATGAATTCAGTAAATCCACGATTACAAATGTAACGATTCACGAA
AGTAGGATTATAGGTAGAATGTTTTACCTTGCAGAAAGAAGTAATGTTAT
ACTTAAAAATGCAACAATATTTGACACTAAAATCGGTCAAGATATGTTTT
ACTTGTATGAAAGCACGGTAACACTAGAGCAATTTATCATCATACGTTGC
GATATTTATTGCGCTTTTAAAGCAATTGAGAGTGTCAAAAAACTTGGATT
AGGTATTAAGTCGGAGTTTTTCAAAAGTAACCTCACTGTTTTGGATTTCA
GGCTTAATGATAGCCGTCTGCAGGAAAATTTATTCAATCTAAAATATGCA
AATATTTATTTGGAAGGGATTGAAATTAAAAACAGTTATATAGATAAAAG
TATATTGGATATTGAAAAATCTACTGTTAAACTTCGAGGATTTAGTTTAA
TAAACAATACCACTCCAAACTTTGCTATTCAAATGAATAGAGTCGAAACT
GCTACTTGTGAAAATTTTACCACACATGGAAATACTTTTTTAACTTTGAT
GAGAATTCAATCATCATACTTCAAAATCTCGAACTTCAAATCAGTTCGTG
ATAATACTGAAGGAAAAATAGCTATCTTTGACGTTGAATTTTCAGATTTA
TATTTGACGAACAGTATGTTTACATTAAATTCCATTGCTATAGGTAGCCA
AATAATGAATTCAAAGCAAAGCACCATTTATTTTACAAAAGTTGACATCG
TGCTACCGAAATCATTGTCCGAGGAACTCAAAGTTTGGAAAATGTTTGGA
AAACATCGTGGGAAAATCAAAAACTTTTCAACCGTATGCGGAAATCATTT
CAACCCTCAAATAAAAAGACTTAAATTATCGACAGAAATTGTTTGCAACA
GATGTCCATCAGCTCAATACTCAATGTCAATTGGAAATTTTCTTATAACT
TTTTTAGAAAGTATGAGCAAATTGGCAAATAAAACAAATGCCATTAAACT
CAGCAAAATTGCACAGATTGAAAAAGTAACATGTAAAATCTGCCCGACAG
GTTCTCGCTGTCCAGATAACGAGTTAATAGCACGTGACAATTTCCATGGC
TTCTATGAAAATAAAACAGCGGATTACCGATTCCTTTTATGTCCCGAAAG
ATACTGTTGTTCATCAACTACAAGAAATTGCAAGTCGCCAACAACTTGCA
ATCTAAATCGAGAAGGAAGACTTTGTGGCAAATGTGAAGAAGGTTACTTC
ATCAGTTTCTTCAATAATAAATGTATCAACATTTCTGAATGTACCAATGG
AAGTCAACATTCTTTCTGGACCCTATTTTTCACTTCTTTCATCGCTTTGG
CTGTGCTGTTAACATTTCTTAAAGATCTCATCACTGCAATCAAATGTGCT
GGGCCGATAATAATGGCATGTTTATGGTAAGAAAGGATTAAATATTTGCG
TTCAGTAGAGTTCAACGGACACGATAATCACAAGTTTGTAATATTCGCGC
AATTTTGTGATATTTGCGGAGTGTTGTGAATTTCCAGTTGCACAGTTTTG
CGATCAAGAGATTGCACACTTTTGTGATTTTAAAAAGTATTTGACTTATT
TTTACCTTGAGAGATTGGATGAGAGCAGAAAATAATCAAATTAAATTTCT
AGCCTTGCGAATATACATAGCTGAAAATAATTATAATTACCTCCTTTCTT
GTGGCGTTGAACCGAGTTAATCCGAGCTTCGATTAAGATATTATCACTCC
CGATAATATTGAGGATTTCGAATTTTGTTCATAAAGAAGCATCAAAATCT
AGTACTGTTTTTGCTAGGAAAAGCTCGGATCAGCTGGCCTAAATTCAGCT
TGTTTGTAGTCTTCTGAACTTGTAAGATAAATCACACTATATAAGGTCAA
ATTAAAATATTCTTGTTATACCCTTATCAAGGTTTCACATTTCCAGAAAA
ATTAAATTTACTGGTTGCGCCACAGAAAAACGTTTTTTAACTTTAAAGTA
GCTTCACCATCCTGCATAGCCCATGCCTGATACGACATTCGCACTTAAAG
GGTTAAAGTAGCTTTTCTCGAGCTCTATGGCTTTTAACAAACTGAATCCT
TCTCTAACGGAAAGAAAAACTTCAACTTGAATAAGTCATTTATTAAACTT
GATCCTTTTCCCCGTATCTGTTCGAGTTGTTAGGTATCTATATATTTTAT
ACACAAGTATATATTTAAGCCCCCCCATTTAAAAATTTGGTTCATTTAAG
TTAATCCTTCCTCTTTTGAACGCATTAGCGCATTAGAGTTTACTCTTCAA
GTGTTCGAAAAAAGTGAGGTTAAACTTTTTTGTGGCACACCCGGTATTGG
ACAAAAAGTTCTTTCGTAATTATTTAAAAAAATTGTAAAAGTACACAAGA
GCTCAATTACTAAAGTACGCATAAGAGAATTGCATATGATGTTATTGTCC
GTTACAGTGATAGTAAAGGCAGGAGAATATTATACAATACGGCAGTATAC
GGACAAAATCAGCTGTGAACTATTTTCGAATTTTCTACCGGTTTTTTAAA
TAGTGATTTGTAATAGATTATAACATAGTGTATATCGCCGTGTCAATTTA
AGACAGAATTAAGTCCATTCTATATATTGCGTTGACCATGACCTCTATGA
AACATAAGTGCGCGCTAAAAAATTACAAAACTGCGTAGAAATTACAAAAG
TCGCACATAGCAGTACCTCGAAACCAAAAGATAATTTCATTCGTGGGACA
AAAGTTCTCTAAATATATATTCTTGTGATTTTCATTTCAGGAAAACTCGC
GCAAAGAAAAAAGAAGAAGATGCCAACGAGATCGATGAAATGGAAGAACT
ACAACCAGGAGACAACCGAAGAAAACGTAAAGAGATTTCCACATCATCAA
TCTTCAATATTTTGGTCTCTTTTTTTCAGTTGAAAGCTTTGATAACAGTT
CAGAGCAATGAGAAAACATTAATCGATAAACTTATGAACATGGATATTGT
GGTTAAAAGTAGTGAAGCTTTAGATGCACTCTGTCCTTTCAGGGGGTTTA
ATGTTGTATGGCGAGAGGTTTTAAACGGATACACGATTCCATTTTTATTG
TTAATGACTATTGCAACTTTACACTTGATTGTAAAACTCTTGAAACACTT
TCGACCATCAAGTTTAAGATTAACATGGTTGATAACGAGATTTTGTGTTG
GGTATTATATCATCATCGCTTTTTGCTACAAGAATATCTGCAGAACAGTC
TTTATGCTTTTGAACTGCAAAACAATGAATGAAGTAACATTCTTATACAT
GGACGGTACTGTTGAATGTTTTTCTTTGTGGCAGGTGGCAAATATGTTAT
TCTTGGTATGTTGGGTTGTTCCTTTCCCATTTGCAGTCGTTTTGGGCTAC
TACCTCTTTAAAAACAAAAAGATTTCTGTGACGACGTTTCTCATATTTTT
AATGTTCCCAATGTTTTGTATTGTGAGAACTTGTTTCTCAAGATGGAAAA
GAACTGTCGAGACTGACAGGAGCGATTTCATTGGCAACAGGCTCGCAGAA
ATATTCGAAGAGCCCTACAGAGAGAAATTCTTTTGGTGGGAATCTTGGCG
ACTTATCGAACGTTTTATTGTTTCTGGCATAGCAGTATTTCTGACGAACC
CTATCTATCGCATTTTATACCTGACCCCCGTCTTTGCTTCCTTATCGTAT
TTCCACTTTCGAATGAATCCATATAAACGTTCGATGTATATTCTAAAAAG
ATTAGATACGGTTTCCTGGTTTTGTTTATTCATTCTTTTGTTCATCAATG
GGATGCGAGCTGTTGTTTACATTTATGATGTACCTAATATCGATTTTATA
AGCCATGCACTAGAAGCTGCTAACATATTGGAGAATTTATTTTCTCCACT
CTGGTATCTTATTATTTCATTCATTCTTAAGAAGTTGAGTGAAAATCTTT
TAAATTTTTAAATTTCATATGATGGAAACTTTTTTAGCAGTGCTAGCCTT
TAAGTATTTTTAAGACAAATACTGATTAGAGCGTACTCTTAGGTGCCTAA
TAAACGCCCCCCGCTTGTTTATTTTTTGATTTCTTTTCCAACCCTGGAAA
ATTTATAACCTTAGTAGGACCCTCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027233-exon-sc0000611-1575043694:170393..172518 | TCONS_00027233-exon-sc0000611-1575043694:170393..172518 | Clytia hemisphaerica | exon |
| TCONS_00027233-exon-sc0000611-1575043694:167693..169028 | TCONS_00027233-exon-sc0000611-1575043694:167693..169028 | Clytia hemisphaerica | exon |
| TCONS_00027233-exon-sc0000611-1510915933:170393..172518 | TCONS_00027233-exon-sc0000611-1510915933:170393..172518 | Clytia hemisphaerica | exon |
| TCONS_00027233-exon-sc0000611-1510915933:167693..169028 | TCONS_00027233-exon-sc0000611-1510915933:167693..169028 | Clytia hemisphaerica | exon |
| TCONS_00027233-exon-sc0000611-1491911889:170393..172518 | TCONS_00027233-exon-sc0000611-1491911889:170393..172518 | Clytia hemisphaerica | exon |
| TCONS_00027233-exon-sc0000611-1491911889:167693..169028 | TCONS_00027233-exon-sc0000611-1491911889:167693..169028 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000611 | supercontig | sc0000611:167693..172518 - |
Blast
The following BLAST results are available for this feature:
|
