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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027230 ID=TCONS_00027230|Name=TCONS_00027230|organism=Clytia hemisphaerica|type=transcript|length=1098bp
cattttcattttgaaaatattaacaaaatttgtttgattgtttttgtaac
tatgttttcattttctcgttttcaaaaacttttttgaagatgttttgttt
tggatAGTTCAACAAATAAAAGatGGAGTTCCTCGCTTCGTATTTCGTTC
ACTTGACTATTCTTTTGGCATCAACAACCTATGGTTTCCTTTCCCCACAA
CTCAAAGATTGCCGTGGATTTCTCAAAGATAAATTTCTTCCAAAGAACTA
CCCAAAACCGTTGAAAAAAGTTGGAATATGTCAACGCTTAAACACAGTGA
AATATTACGCTACAATGTACAATTTGGAACACAAAATACCTCTTTACTCC
GCTTACAAGATGGATCCATCTATAGAAAAAGACCAACCACCTGATCTCAA
AAAATGGATGGTTGAGCTTGGTTTGAGTGCAAAAGGCGGAGATATGGGCG
ATGAAAACGAATTAAcgaaaaaagaagcaaaaatacAAGCTGTAAATAAA
GACTACACAGAGGCAAAAGAGCCTGTTGTCCGAGGACAGATGTGTCCGAA
GATTCATCGAAATAAAGAAGCAAGAACGGCGACTTTTACACTGACCAACG
CGGCCCcactttatgaaaaatttcaagcCGTTTGGCGTATTGttgagcaa
gagactaaaaaactaatgatgaagaAATGCATTGGTGCCCTTGCGCCTGG
CACTCCATTCTTCGTCCCTGGGCCTATACCAGGTCCGACACAAATAGCAG
AAAAAGTTCACATACCGACGCATGCGTATGTGGCATCTGCCTGCGCTAAA
GACTCACCAGGAACTTTTTCTTTCGGCGTGATGGGACCGAACGACGAAAG
TGCCAAGAGCCCTAAAGACATTCCAATTTTGGTGACTGATGTAGTGACTT
TGGGTAAAAAGATTAAAGAATACTGGGGTATGCCCCCTCCCCCGGAAGCt
cctatcaaatttttcaaagatgaCGGAAACCCTGTCAATAATGTGGCGGT
TAATGAACTCAAGGATGCTTTAAAAGACAGGGGTGTTAATGTTGTCGAAG
ATATGTAAATGGGACCACAATGAtatgcacgtttttttaagaacatcc Run BLAST on NCBI protein sequence of TCONS_00027230-protein >TCONS_00027230-protein ID=TCONS_00027230-protein|Name=TCONS_00027230-protein|organism=Clytia hemisphaerica|type=polypeptide|length=311bp
MEFLASYFVHLTILLASTTYGFLSPQLKDCRGFLKDKFLPKNYPKPLKKV
GICQRLNTVKYYATMYNLEHKIPLYSAYKMDPSIEKDQPPDLKKWMVELG
LSAKGGDMGDENELTKKEAKIQAVNKDYTEAKEPVVRGQMCPKIHRNKEA
RTATFTLTNAAPLYEKFQAVWRIVEQETKKLMMKKCIGALAPGTPFFVPG
PIPGPTQIAEKVHIPTHAYVASACAKDSPGTFSFGVMGPNDESAKSPKDI
PILVTDVVTLGKKIKEYWGMPPPPEAPIKFFKDDGNPVNNVAVNELKDAL
KDRGVNVVEDM Run BLAST on NCBI transcript from alignment at sc0000611:107562..108987- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027230 ID=TCONS_00027230|Name=TCONS_00027230|organism=Clytia hemisphaerica|type=transcript|length=1426bp|location=Sequence derived from alignment at sc0000611:107562..108987- (Clytia hemisphaerica)
CATTTTCATTTTGAAAATATTAACAAAATTTGTTTGATTGTTTTTGTAAC
TATGTTTTCATTTTCTCGTTTTCAAAAACTTTTTTGAAGATGTTTTGTTT
TGGATAGTTCAACAAATAAAAGGTAAGAAATTTTGCTCTTTGCTCTAATT
AACATTGTGAACAACCTATACCACAGCCCTTTACTTTAAGCTATACAGTA
AAAAACAAAATTCAAAGAAGATGTGCTGAATTTCAAGTAATTCTTTATTT
TCTAAAAGCTTCACGGTATTGAAAATAGGATTAAAAGCCAAAATTAATTA
TACTTAAAAACGAAAAGATTTGGACTCAGGTTGTCATAACAGCAAAGTCT
CAACAAAATTTTAATTTTTCTATAAAAGAAAGAGTGTTGATGGTTTCTAT
CCTGATTGGTCTTTGTATCCACAATTCGATTATTTTTCTTTTCTTTTAAG
ATGGAGTTCCTCGCTTCGTATTTCGTTCACTTGACTATTCTTTTGGCATC
AACAACCTATGGTTTCCTTTCCCCACAACTCAAAGATTGCCGTGGATTTC
TCAAAGATAAATTTCTTCCAAAGAACTACCCAAAACCGTTGAAAAAAGTT
GGAATATGTCAACGCTTAAACACAGTGAAATATTACGCTACAATGTACAA
TTTGGAACACAAAATACCTCTTTACTCCGCTTACAAGATGGATCCATCTA
TAGAAAAAGACCAACCACCTGATCTCAAAAAATGGATGGTTGAGCTTGGT
TTGAGTGCAAAAGGCGGAGATATGGGCGATGAAAACGAATTAACGAAAAA
AGAAGCAAAAATACAAGCTGTAAATAAAGACTACACAGAGGCAAAAGAGC
CTGTTGTCCGAGGACAGATGTGTCCGAAGATTCATCGAAATAAAGAAGCA
AGAACGGCGACTTTTACACTGACCAACGCGGCCCCACTTTATGAAAAATT
TCAAGCCGTTTGGCGTATTGTTGAGCAAGAGACTAAAAAACTAATGATGA
AGAAATGCATTGGTGCCCTTGCGCCTGGCACTCCATTCTTCGTCCCTGGG
CCTATACCAGGTCCGACACAAATAGCAGAAAAAGTTCACATACCGACGCA
TGCGTATGTGGCATCTGCCTGCGCTAAAGACTCACCAGGAACTTTTTCTT
TCGGCGTGATGGGACCGAACGACGAAAGTGCCAAGAGCCCTAAAGACATT
CCAATTTTGGTGACTGATGTAGTGACTTTGGGTAAAAAGATTAAAGAATA
CTGGGGTATGCCCCCTCCCCCGGAAGCTCCTATCAAATTTTTCAAAGATG
ACGGAAACCCTGTCAATAATGTGGCGGTTAATGAACTCAAGGATGCTTTA
AAAGACAGGGGTGTTAATGTTGTCGAAGATATGTAAATGGGACCACAATG
ATATGCACGTTTTTTTAAGAACATCC Coding sequence (CDS) from alignment at sc0000611:107562..108987- >TCONS_00027230 ID=TCONS_00027230|Name=TCONS_00027230|organism=Clytia hemisphaerica|type=CDS|length=936bp|location=Sequence derived from alignment at sc0000611:107562..108987- (Clytia hemisphaerica)
ATGGAGTTCCTCGCTTCGTATTTCGTTCACTTGACTATTCTTTTGGCATC
AACAACCTATGGTTTCCTTTCCCCACAACTCAAAGATTGCCGTGGATTTC
TCAAAGATAAATTTCTTCCAAAGAACTACCCAAAACCGTTGAAAAAAGTT
GGAATATGTCAACGCTTAAACACAGTGAAATATTACGCTACAATGTACAA
TTTGGAACACAAAATACCTCTTTACTCCGCTTACAAGATGGATCCATCTA
TAGAAAAAGACCAACCACCTGATCTCAAAAAATGGATGGTTGAGCTTGGT
TTGAGTGCAAAAGGCGGAGATATGGGCGATGAAAACGAATTAACGAAAAA
AGAAGCAAAAATACAAGCTGTAAATAAAGACTACACAGAGGCAAAAGAGC
CTGTTGTCCGAGGACAGATGTGTCCGAAGATTCATCGAAATAAAGAAGCA
AGAACGGCGACTTTTACACTGACCAACGCGGCCCCACTTTATGAAAAATT
TCAAGCCGTTTGGCGTATTGTTGAGCAAGAGACTAAAAAACTAATGATGA
AGAAATGCATTGGTGCCCTTGCGCCTGGCACTCCATTCTTCGTCCCTGGG
CCTATACCAGGTCCGACACAAATAGCAGAAAAAGTTCACATACCGACGCA
TGCGTATGTGGCATCTGCCTGCGCTAAAGACTCACCAGGAACTTTTTCTT
TCGGCGTGATGGGACCGAACGACGAAAGTGCCAAGAGCCCTAAAGACATT
CCAATTTTGGTGACTGATGTAGTGACTTTGGGTAAAAAGATTAAAGAATA
CTGGGGTATGCCCCCTCCCCCGGAAGCTCCTATCAAATTTTTCAAAGATG
ACGGAAACCCTGTCAATAATGTGGCGGTTAATGAACTCAAGGATGCTTTA
AAAGACAGGGGTGTTAATGTTGTCGAAGATATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027230-exon-sc0000611-1575043694:108866..108987 | TCONS_00027230-exon-sc0000611-1575043694:108866..108987 | Clytia hemisphaerica | exon |
| TCONS_00027230-exon-sc0000611-1575043694:107562..108537 | TCONS_00027230-exon-sc0000611-1575043694:107562..108537 | Clytia hemisphaerica | exon |
| TCONS_00027230-exon-sc0000611-1510915933:108866..108987 | TCONS_00027230-exon-sc0000611-1510915933:108866..108987 | Clytia hemisphaerica | exon |
| TCONS_00027230-exon-sc0000611-1510915933:107562..108537 | TCONS_00027230-exon-sc0000611-1510915933:107562..108537 | Clytia hemisphaerica | exon |
| TCONS_00027230-exon-sc0000611-1491911889:108866..108987 | TCONS_00027230-exon-sc0000611-1491911889:108866..108987 | Clytia hemisphaerica | exon |
| TCONS_00027230-exon-sc0000611-1491911889:107562..108537 | TCONS_00027230-exon-sc0000611-1491911889:107562..108537 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000611 | supercontig | sc0000611:107562..108987 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001604 | DNA/RNA_non-sp_Endonuclease |
| IPR020821 | Extracellular_endonuc_su_A |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016787 | hydrolase activity |
| GO:0003676 | nucleic acid binding |
| GO:0046872 | metal ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0016787 |
hydrolase activity |
| molecular_function |
GO:0046872 |
metal ion binding |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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