TCONS_00027226 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027226
Unique NameTCONS_00027226
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length499

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027226 ID=TCONS_00027226|Name=TCONS_00027226|organism=Clytia hemisphaerica|type=transcript|length=499bp
GGACACATCGATCGACATTGCAATCATCATGGAGAATGGGAAGATATCAA
CATCGATGATATTTGTCTGCCTTTAGAGGAATATGAAGTATTGAAAAGAT
GGAAAAGTCTGCTTGAACGTTACAATATGACGGTGATTTCAAGCAATGCT
AGCAAGCTTTATACAAGCAAGCTGGTCTTCTTGTGGTTGTTGGTTCTGGC
AATGTCAGCCATATTATTTAATACTGTGTAACAAAATGCTGTTGGCGTGG
TGCAAATCAAAGACAACACCAAGTGTTTATATAAATGATTATAGTCGTAG
AGGGTGTTTATCTTCTCCTCGTAGAGTGCTCAATAAGTAAATAGAGCGTT
ACTATAATAAAGAGTCTTgagtcaactctttattatataAATGATTATAT
TCATTAACGGTAAATTATTTatgaaaatacaattcaattAGATTGTATCA
ATATGACTCTTCTTAATGTTTTAcagttttcatcaaaatttcatgttcC
Run BLAST on NCBI

transcript from alignment at sc0000611:81391..83648-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027226 ID=TCONS_00027226|Name=TCONS_00027226|organism=Clytia hemisphaerica|type=transcript|length=2258bp|location=Sequence derived from alignment at sc0000611:81391..83648- (Clytia hemisphaerica)
GGACACATCGATCGACATTGCAATCATCATGGAGAATGGGAAGATATCAA
CATCGATGATATTTGTCTGCCTTTAGAGGAATATGAAGTATTGAAAAGAT
GGAAAAGTCTGCTTGAACGTTACAATATGACGGTAAAAAATATAACATAA
TTAATCTCGTTTCAAGGATCAAATTTTTACGGTGGTTTGTTAGTGCCATG
TACAAAACAGATATAATTAGCTAACTAACTGGGCTCAAATATATTATGAC
TTAGCGTGCTAACTCGACCTTGCGTACTAACTCGACTTAGTGTATTAACT
CTACTTAGCGTACTAACTTACTTGACGAACTCGACTTACGGGGAGACCAC
ACAAGTTGGACCCCCAAAATGGACGCCTAAAATGAACCACCAAATGGAAT
CCCTTAAAATTGAAAAATACGGCTGTTTCTGGCTGTAAATGATCGAACTG
GTGACGTTGACGAAGGTGCTGGTGATTCTGATGGTGGTATGATTGTGGTG
CTGGTGAACCTGACGATTGAATAAATGGTGCTTAAAAATATGAATGTGAT
GATGGGAGCAATGGTGCTGGAATGTGGTGAAGAAAATAAGGGTGATCATC
AGATTAATCATCAGATTCCTCATTTACCGTTGATCTCACCAACAGATCCA
TCAGTTCCATCGTCACATTCATCAGTTACATTGATTCCACCATCTATTGG
TTTCAGCATTAGAATCGCTAGCACCATTGACTTCAACATTAGATTCATTC
AGCAAGTTTGCTTTAACTTCATTGATTCCAGCATCAGGTTCATCAACACC
ATTGATTCCACTTTCAGAATCACCCGGTACATCATCACCACCACTAGATT
CATCAGCACCAACATCAGATTCACAAGAGCCTTGATGACATCACAAGAAT
CACTAGATCATCCATCATCAGAATCACCAGATCCATCATTGAATCAGAAT
TCTACAGCCAGAAAAAAGTGTAATTTTCAATCCATTTGACGGTCCACTTT
GTCGTCTCCCCAGTAAGTCGAGTTAGTACACTAAGTCAAGTTAGTGCGCT
AAGTCAAGTTAGTACAATAAGTCGAGTTAGTGCGCTAAGTTGAGNTTCAC
AAGAGCCTTGATGATACCACAAAAATCACTAGATCCATCATCAGAATCAC
CAGATCCATCATTGAATCAGAATTTTACAGCCAGAAAAAAGTGTAATTTT
CAATCCATTTAACGGTCCACTTTGTCGTCTCCCCGGTAAGTCGAGTTAGT
ACACTAAGTCAAGTTAGTGCGCTAAGTCAAGTTAGTACAATAAGTCGAGT
TAGTGCGCTAAGTTGAGTTAGCACGCTTAGTAGAGTTAGTACACTAAGTC
GAGTTAGTATCTGTTTTGTACATGGCACTAACAAACCACCGTGAATTTTA
CCACTTTTCGATTTTAATGGTGAATGAATTCAAATCATTAGATGCATAGG
TTTTCGATGTTTTGTGTTGAAGACGGCTTTCACGACCCTTTAGAAATTCT
ACTGGTAGTTCTCATACTTTATCTTGTGTTCTATTTCATTATTTGTAGGT
GATTTCAAGCAATGCTAGCAAGCTTTATACAAGCAAGGTAAGTGAGAGTT
TGTCTCAACATATTTTCTGAAAGGTTTTCGTAATTAAACCTTTCTCATAT
AAACCTGTAAGCATGAGGATGTGAGGATCTTCGAGTTACTCTTTCAAGTT
CCGAGAAAGGTTTATCAGTTTCAAGAAATAGACATATAGCAGTCTTGCAC
CCAGAGTCATTTGTATCACTTTTTGATTTTACTGATGGGCGTGATACAAC
CTTTCGCGTGCTTTTAGAAAAACTAAAAAAGGCGAACTGAGGCAATGAGT
TCGAGTTTGGATGTCTACCCCTCTTATTTTATTTAAAAACAATAATATCA
TATTGTGTAATATCTCTTTTCCCATTTTAGCTGGTCTTCTTGTGGTTGTT
GGTTCTGGCAATGTCAGCCATATTATTTAATACTGTGTAACAAAATGCTG
TTGGCGTGGTGCAAATCAAAGACAACACCAAGTGTTTATATAAATGATTA
TAGTCGTAGAGGGTGTTTATCTTCTCCTCGTAGAGTGCTCAATAAGTAAA
TAGAGCGTTACTATAATAAAGAGTCTTGAGTCAACTCTTTATTATATAAA
TGATTATATTCATTAACGGTAAATTATTTATGAAAATACAATTCAATTAG
ATTGTATCAATATGACTCTTCTTAATGTTTTACAGTTTTCATCAAAATTT
CATGTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015308XLOC_015308Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027226-exon-sc0000611-1575043694:83517..83648TCONS_00027226-exon-sc0000611-1575043694:83517..83648Clytia hemisphaericaexon
TCONS_00027226-exon-sc0000611-1575043694:82062..82100TCONS_00027226-exon-sc0000611-1575043694:82062..82100Clytia hemisphaericaexon
TCONS_00027226-exon-sc0000611-1575043694:81391..81718TCONS_00027226-exon-sc0000611-1575043694:81391..81718Clytia hemisphaericaexon
TCONS_00027226-exon-sc0000611-1510915933:83517..83648TCONS_00027226-exon-sc0000611-1510915933:83517..83648Clytia hemisphaericaexon
TCONS_00027226-exon-sc0000611-1510915933:82062..82100TCONS_00027226-exon-sc0000611-1510915933:82062..82100Clytia hemisphaericaexon
TCONS_00027226-exon-sc0000611-1510915933:81391..81718TCONS_00027226-exon-sc0000611-1510915933:81391..81718Clytia hemisphaericaexon
TCONS_00027226-exon-sc0000611-1491911889:83517..83648TCONS_00027226-exon-sc0000611-1491911889:83517..83648Clytia hemisphaericaexon
TCONS_00027226-exon-sc0000611-1491911889:82062..82100TCONS_00027226-exon-sc0000611-1491911889:82062..82100Clytia hemisphaericaexon
TCONS_00027226-exon-sc0000611-1491911889:81391..81718TCONS_00027226-exon-sc0000611-1491911889:81391..81718Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000611supercontigsc0000611:81391..83648 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.410147	0.119298	0.138516	0.813099	0.494935	0.521472	0.786418	1.17798	5.67001	5.49088	9.41973	12.8732	0.0813625	0.253487	1.25041	1.11823	0.367352	0.564786	0.260094	0.136085	0.47313	0.519246	2.38458	0.765151	1.57617	1.64115	0.335497	0.537077	2.44412	1.38343
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027226 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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