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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027225 ID=TCONS_00027225|Name=TCONS_00027225|organism=Clytia hemisphaerica|type=transcript|length=888bp
AAATCATAAAAAGATTCACGGTCCCTCATGAAATCAACTTGAGCCAGGAA
ATCAAAGAAAACGACCCCGTCAAAAATGCATCAGGCTTTGTCAAATGTGA
AGTTTGCTCAAAGGAATACAAATATGTCAAATGTCTAGAAAACCACTTGA
AAAAGGTTCACAACTAACAACCAGCAAAGCCAAGTACTCCCCCTGTTTTT
GCCGATGAGACGAGAACAAAGGATGACGATCTTGctgagaaaaatgaaga
ttataTTTCCAACTATCAAAAGGCACTATTTACCTTCAATCTTATGTTGA
GGAATATCAATGATTGCATCAGAGAAGGTGATGGGGAACGCCTGATGGAA
TGCTACAAATTCGCCCTGCTTTATTTTAGATGTTTCGGCCACACGAAGTA
TGCCTATACGGTCTTGAAATTATTTTACCGAATCAAGTACCAACCCGAGG
CTGCATTTAGATTGATTTGGTCGAGATTTATTAATACGCACGGAAAAAAG
GGGCGCAACGTTTCAAGGGATTTACACTCGGAACATTTGAAAGAGTTATT
AAGATCACTAAGAAGCAACCTTAATGAAAGTAatgcaaaaagaatttcaa
gagcaactagaaatttgaatttaattataaaaaacttggaaaaaggCAGT
ggtatcaaagaagaaatccaCAGTTCGAAAGTTGCAAAGATTCTGCCAGA
TGTTCAAAATCTTGCAGCTGAGCTTTTCAAGGCAAAGGTTTTCGAGAAGA
TTCCAGGGAGAGAATGCGAATCGTTTCCAAAATTCTCTGAAGACATTCTA
TCCATTTTAAATATCCCAAAAACTTTGGAATGGTTGAAAACCAAACGAAG
TGAATTTAAAGAGCTTTATGCATATATTTTGTTTATAA Run BLAST on NCBI protein sequence of TCONS_00027225-protein >TCONS_00027225-protein ID=TCONS_00027225-protein|Name=TCONS_00027225-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MLRNINDCIREGDGERLMECYKFALLYFRCFGHTKYAYTVLKLFYRIKYQ
PEAAFRLIWSRFINTHGKKGRNVSRDLHSEHLKELLRSLRSNLNESNAKR
ISRATRNLNLIIKNLEKGSGIKEEIHSSKVAKILPDVQNLAAELFKAKVF
EKIPGRECESFPKFSEDILSILNIPKTLEWLKTKRSEFKELYAYILFI Run BLAST on NCBI transcript from alignment at sc0000611:24721..25873- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027225 ID=TCONS_00027225|Name=TCONS_00027225|organism=Clytia hemisphaerica|type=transcript|length=1153bp|location=Sequence derived from alignment at sc0000611:24721..25873- (Clytia hemisphaerica)
AAATCATAAAAAGGTTGGTAAGGTTGGTCAATGAAAAAATAGGAAATTTA
TGCTACTGTAGTCTATTTCAGAAAGGCCTTAGTAATTTATCATATTGAAT
CATACACAGCCCTGAAAATGGCCAAATATTGAGCAATTTGGCTTTATTTA
TAAGAACATAGGCTTCGAAACCCAAAAACAGGCAAATTACTAAAATAACA
TTTATAAGCTTCAAAAAGTTTTGCCGTTATTATGCTCTTTTTACATACTT
TGTTGTAAAACTTTTTATTTCACTTTAGATTCACGGTCCCTCATGAAATC
AACTTGAGCCAGGAAATCAAAGAAAACGACCCCGTCAAAAATGCATCAGG
CTTTGTCAAATGTGAAGTTTGCTCAAAGGAATACAAATATGTCAAATGTC
TAGAAAACCACTTGAAAAAGGTTCACAACTAACAACCAGCAAAGCCAAGT
ACTCCCCCTGTTTTTGCCGATGAGACGAGAACAAAGGATGACGATCTTGC
TGAGAAAAATGAAGATTATATTTCCAACTATCAAAAGGCACTATTTACCT
TCAATCTTATGTTGAGGAATATCAATGATTGCATCAGAGAAGGTGATGGG
GAACGCCTGATGGAATGCTACAAATTCGCCCTGCTTTATTTTAGATGTTT
CGGCCACACGAAGTATGCCTATACGGTCTTGAAATTATTTTACCGAATCA
AGTACCAACCCGAGGCTGCATTTAGATTGATTTGGTCGAGATTTATTAAT
ACGCACGGAAAAAAGGGGCGCAACGTTTCAAGGGATTTACACTCGGAACA
TTTGAAAGAGTTATTAAGATCACTAAGAAGCAACCTTAATGAAAGTAATG
CAAAAAGAATTTCAAGAGCAACTAGAAATTTGAATTTAATTATAAAAAAC
TTGGAAAAAGGCAGTGGTATCAAAGAAGAAATCCACAGTTCGAAAGTTGC
AAAGATTCTGCCAGATGTTCAAAATCTTGCAGCTGAGCTTTTCAAGGCAA
AGGTTTTCGAGAAGATTCCAGGGAGAGAATGCGAATCGTTTCCAAAATTC
TCTGAAGACATTCTATCCATTTTAAATATCCCAAAAACTTTGGAATGGTT
GAAAACCAAACGAAGTGAATTTAAAGAGCTTTATGCATATATTTTGTTTA
TAA Coding sequence (CDS) from alignment at sc0000611:24721..25873- >TCONS_00027225 ID=TCONS_00027225|Name=TCONS_00027225|organism=Clytia hemisphaerica|type=CDS|length=594bp|location=Sequence derived from alignment at sc0000611:24721..25873- (Clytia hemisphaerica)
ATGTTGAGGAATATCAATGATTGCATCAGAGAAGGTGATGGGGAACGCCT
GATGGAATGCTACAAATTCGCCCTGCTTTATTTTAGATGTTTCGGCCACA
CGAAGTATGCCTATACGGTCTTGAAATTATTTTACCGAATCAAGTACCAA
CCCGAGGCTGCATTTAGATTGATTTGGTCGAGATTTATTAATACGCACGG
AAAAAAGGGGCGCAACGTTTCAAGGGATTTACACTCGGAACATTTGAAAG
AGTTATTAAGATCACTAAGAAGCAACCTTAATGAAAGTAATGCAAAAAGA
ATTTCAAGAGCAACTAGAAATTTGAATTTAATTATAAAAAACTTGGAAAA
AGGCAGTGGTATCAAAGAAGAAATCCACAGTTCGAAAGTTGCAAAGATTC
TGCCAGATGTTCAAAATCTTGCAGCTGAGCTTTTCAAGGCAAAGGTTTTC
GAGAAGATTCCAGGGAGAGAATGCGAATCGTTTCCAAAATTCTCTGAAGA
CATTCTATCCATTTTAAATATCCCAAAAACTTTGGAATGGTTGAAAACCA
AACGAAGTGAATTTAAAGAGCTTTATGCATATATTTTGTTTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027225-exon-sc0000611-1575043694:25861..25873 | TCONS_00027225-exon-sc0000611-1575043694:25861..25873 | Clytia hemisphaerica | exon |
| TCONS_00027225-exon-sc0000611-1575043694:24721..25595 | TCONS_00027225-exon-sc0000611-1575043694:24721..25595 | Clytia hemisphaerica | exon |
| TCONS_00027225-exon-sc0000611-1510915933:25861..25873 | TCONS_00027225-exon-sc0000611-1510915933:25861..25873 | Clytia hemisphaerica | exon |
| TCONS_00027225-exon-sc0000611-1510915933:24721..25595 | TCONS_00027225-exon-sc0000611-1510915933:24721..25595 | Clytia hemisphaerica | exon |
| TCONS_00027225-exon-sc0000611-1491911889:25861..25873 | TCONS_00027225-exon-sc0000611-1491911889:25861..25873 | Clytia hemisphaerica | exon |
| TCONS_00027225-exon-sc0000611-1491911889:24721..25595 | TCONS_00027225-exon-sc0000611-1491911889:24721..25595 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000611 | supercontig | sc0000611:24721..25873 - |
Blast
The following BLAST results are available for this feature:
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