TCONS_00027224 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027224
Unique NameTCONS_00027224
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length260

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027224 ID=TCONS_00027224|Name=TCONS_00027224|organism=Clytia hemisphaerica|type=transcript|length=260bp
ttttaaaGGAATGGAAAAGTTTAGGGCTGACAAACTTAACACTGTTGTTG
GATAATATGTTTGATATGTAAATTGATTTTTAGATTGGACTTATTTGAAA
CTGACAAAACTGAATTCACTGACTAGAGAGAACTGACTGACCACAATGAC
CTATGGGAAACAGAACCAAATGACTTGACgaATAAACAATTCGTGCAACC
AAATCAGCTATATTACAGAAACGCAGCGGAACATCCAATACGATGATCCA
AAACGAGCTT
Run BLAST on NCBI

transcript from alignment at sc0000611:5226..6149-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027224 ID=TCONS_00027224|Name=TCONS_00027224|organism=Clytia hemisphaerica|type=transcript|length=924bp|location=Sequence derived from alignment at sc0000611:5226..6149- (Clytia hemisphaerica)
TTTTAAAGGAATGGAAAAGTTTAGGGCTGACAAACTTAACACTGTTGTTG
GATAATATGTTTGATATGTAAATTGATTTTTAGATTGGACTTATTTGAAA
CTGACAAAACTGAATTCACTGACTAGAGAGAACTGACTGACCACAATGAC
CTATGGGAAACAGAACCAAATGACTTGACGTAGACACCTTTTGACAATCG
TCATATTTATCCTAACGACACTCATTTATTTTACATTTTAACTGGGATCC
TTTTTTGTAAAAATAAAGGGGGTTTTGAAAATTAAATCAAAACACTGACA
TCACTGGAAAATGACAATTTATAGCGATTTTGAAAAAGAGAACAACTGAA
ATTCTCTTCAGTAAAAAACCTTTAGATTTTGTTTTGTACAATTTCGATTG
TCTTTTAAGTATTTCAACCATCTTTTACTATTAAAGTTTTCAAGACAATA
CTAAGATTAGACTTGTAGTAATGCTTTTAAATCAAAATCCTCTTGTTTTA
CAAAAATGCAAAATTTAGGATTGATATCTTCCAACTTCCTGTTTACATTG
ATTTAAATTACAGATCTAGAAAGAGTCTGATAATAGCTGATATTATTTTT
CAATTTAGGAATAAACAATTCGTGCAACCAAATCAGCTGTAAGTTTGTTT
AGTTACGTGATAATTGTTTGCTCAGAAATAGAATCTGCTTATACTCACAT
ACTGTTTTAAGTAAGTCTATATTTATTGCCCTCTTTCAGTGGTTTTAACG
GTTGAAATTTTCAAACCTCTCCTCGTTGTTTATTCGGCACCTGAATAGAT
TGGTCACCTAAATATTTCTTTCGTTGCATGTATTTATACATAGTTATATG
ATATTCTTCATTATATTCTTTAGATATTACAGAAACGCAGCGGAACATCC
AATACGATGATCCAAAACGAGCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015306XLOC_015306Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027224-exon-sc0000611-1575043694:5971..6149TCONS_00027224-exon-sc0000611-1575043694:5971..6149Clytia hemisphaericaexon
TCONS_00027224-exon-sc0000611-1575043694:5512..5541TCONS_00027224-exon-sc0000611-1575043694:5512..5541Clytia hemisphaericaexon
TCONS_00027224-exon-sc0000611-1575043694:5226..5276TCONS_00027224-exon-sc0000611-1575043694:5226..5276Clytia hemisphaericaexon
TCONS_00027224-exon-sc0000611-1510915933:5971..6149TCONS_00027224-exon-sc0000611-1510915933:5971..6149Clytia hemisphaericaexon
TCONS_00027224-exon-sc0000611-1510915933:5512..5541TCONS_00027224-exon-sc0000611-1510915933:5512..5541Clytia hemisphaericaexon
TCONS_00027224-exon-sc0000611-1510915933:5226..5276TCONS_00027224-exon-sc0000611-1510915933:5226..5276Clytia hemisphaericaexon
TCONS_00027224-exon-sc0000611-1491911889:5971..6149TCONS_00027224-exon-sc0000611-1491911889:5971..6149Clytia hemisphaericaexon
TCONS_00027224-exon-sc0000611-1491911889:5512..5541TCONS_00027224-exon-sc0000611-1491911889:5512..5541Clytia hemisphaericaexon
TCONS_00027224-exon-sc0000611-1491911889:5226..5276TCONS_00027224-exon-sc0000611-1491911889:5226..5276Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000611supercontigsc0000611:5226..6149 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.31296	1.92052	0.743301	0	6.19711	4.89704	5.90807	10.272	4.42563	0.685232	1.99531	2.62328	0.87321	2.72051	1.49109	5.20053	4.43536	4.5461	0	4.38152	3.17362	3.71515	1.50542	1.36864	0.704835	0	0	0	0.728643	0.742372
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027224 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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