|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027219 ID=TCONS_00027219|Name=TCONS_00027219|organism=Clytia hemisphaerica|type=transcript|length=1617bp
ttttctttttccaaatttttcttggactttttttttcatcaaaaattttg
ttattgttattgCTTGGTtatctttttcgtttttcctaTGTCACAAAATG
TTAGAAAATAATATGtatgtataataataataaaaaaatttcaccagaaa
ttttctttcatattttcgAGATATTCATTAAAATTGGGTTTCATTGTCaa
aatattctaaattttcatgtttttttttctcggaGAAATTATTTCAACCA
TCTTCAAAAAGGAATAtctcaaaattagaaaaacaaaatccaaaaaaaat
gtcttgtgtattaaaaaaattatccaaaaacatattaaaaagccgattcg
ttaattttttcaatgcaaagcTTCATTTCAGAGTATCTGAAGCCAGTATA
TCGTGTGTGTACTAAAAAGCTTTTCGCCAAGTTCCATTTCTCTCTGGTAT
ATATACTTTATACACAATTTCTCTATACAATCTTTAATTAAATTATATTA
CATTTTATGGAGCAAAAATCTGTCATCTTTTTCTATGTATatataaacaa
aatctttttaaaagtcAAGTCAAGGGGCATAAAGCATCGGAGAAAATCTC
TCTTTAAAAGAAATGAACTCCAAAAAGAGGTTTGGAAAAGATTCATAGTC
CTATAAGATGAAGTCAAAATCACTCGACCTCAAAACATCTTTTAAATCGA
ATAAAACGTTATTAAGTTCTGGTAATTCGTTCTTGCAACTTAATTCTATC
ATGAGTTCGTTAGCGATATCGTCGCTGATTGTCGACGTGTTGCAGCGATC
TAATGCCGATGTCGTCGTCGTGTTGCATTCTTCCTCCGTcagaaaatgta
aaatttcctcaatatttgaaaatttgttcgTTTTGGTGTTATTACATAGT
GAAATACCGTTACCAAAGTTTTTGTATAGCGGCGTAGTCGGTACTGAGAC
GACATTTTGTTGTTCGACTGTTTTGGTTGACGTTGTTGAGAGACGTTGTC
GTTTGATTTGTGTCGGCGTGTCGTCGGATGACGGTCTGTATTTTCGTTTG
GGCGAGAATGAAGGTGTCGGTGTTGCACATACGATGGGTGTTGCAGCTAT
CGTGCTTGTCGTAAAACATGTCGTGtcgaaatcaaaaatcaaaggTGCCG
TAGCCATTATTGATGTGTTGTGAAATTGTCTTGAATGCTCTCCTCTGTAT
TCTGCAAACTTTCTCTTGAGAATGATTCCTCTTCTATGTTCTTCGTCCCT
TGTTCTGGTTTGTGGTTCTCAAATTCTGTTCACAAccgaagtaaaaaaaa
atttcttccttttcttgtttaatatttcatcaaaaaaaatccTCTCCGTT
TATTCTTCTTCTTCGAAGTTCGTTTTCGTTTCGTTTCCAAGATTAATCTT
TGCAGttacaatgaaaaaaatgtagTACTGTTGATGAGGTTgatgaataa
aaaaatcttcttttttttcgtcgtcgATTTTCTTCTGTTCGTATTGTGTG
TTTAGTATTCTTCttgttaaaaaaaagtttctttatttttattgtaaacT
TGTAATTCTAATGCTCGAGTTTTTTTTCTAGTTTTCTTATTCTGTGATGT
GAACTCGTCGACAGTTA Run BLAST on NCBI protein sequence of TCONS_00027219-protein >TCONS_00027219-protein ID=TCONS_00027219-protein|Name=TCONS_00027219-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MATAPLIFDFDTTCFTTSTIAATPIVCATPTPSFSPKRKYRPSSDDTPTQ
IKRQRLSTTSTKTVEQQNVVSVPTTPLYKNFGNGISLCNNTKTNKFSNIE
EILHFLTEEECNTTTTSALDRCNTSTISDDIANELMIELSCKNELPELNN
VLFDLKDVLRSSDFDFIL Run BLAST on NCBI transcript from alignment at sc0000609:103827..105443 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027219 ID=TCONS_00027219|Name=TCONS_00027219|organism=Clytia hemisphaerica|type=transcript|length=1617bp|location=Sequence derived from alignment at sc0000609:103827..105443 (Clytia hemisphaerica)
TAACTGTCGACGAGTTCACATCACAGAATAAGAAAACTAGAAAAAAAACT
CGAGCATTAGAATTACAAgtttacaataaaaataaagaaactttttttta
acaaGAAGAATACTAAACACACAATACGAACAGAAGAAAATcgacgacga
aaaaaaagaagatttttttattcatcAACCTCATCAACAGTActacattt
ttttcattgtaaCTGCAAAGATTAATCTTGGAAACGAAACGAAAACGAAC
TTCGAAGAAGAAGAATAAACGGAGAggattttttttgatgaaatattaaa
caagaaaaggaagaaatttttttttacttcggTTGTGAACAGAATTTGAG
AACCACAAACCAGAACAAGGGACGAAGAACATAGAAGAGGAATCATTCTC
AAGAGAAAGTTTGCAGAATACAGAGGAGAGCATTCAAGACAATTTCACAA
CACATCAATAATGGCTACGGCAcctttgatttttgatttcgaCACGACAT
GTTTTACGACAAGCACGATAGCTGCAACACCCATCGTATGTGCAACACCG
ACACCTTCATTCTCGCCCAAACGAAAATACAGACCGTCATCCGACGACAC
GCCGACACAAATCAAACGACAACGTCTCTCAACAACGTCAACCAAAACAG
TCGAACAACAAAATGTCGTCTCAGTACCGACTACGCCGCTATACAAAAAC
TTTGGTAACGGTATTTCACTATGTAATAACACCAAAAcgaacaaattttc
aaatattgaggaaattttacattttctgACGGAGGAAGAATGCAACACGA
CGACGACATCGGCATTAGATCGCTGCAACACGTCGACAATCAGCGACGAT
ATCGCTAACGAACTCATGATAGAATTAAGTTGCAAGAACGAATTACCAGA
ACTTAATAACGTTTTATTCGATTTAAAAGATGTTTTGAGGTCGAGTGATT
TTGACTTCATCTTATAGGACTATGAATCTTTTCCAAACCTCTTTTTGGAG
TTCATTTCTTTTAAAGAGAGATTTTCTCCGATGCTTTATGCCCCTTGACT
TgacttttaaaaagattttgtttatatATACATAGAAAAAGATGACAGAT
TTTTGCTCCATAAAATGTAATATAATTTAATTAAAGATTGTATAGAGAAA
TTGTGTATAAAGTATATATACCAGAGAGAAATGGAACTTGGCGAAAAGCT
TTTTAGTACACACACGATATACTGGCTTCAGATACTCTGAAATGAAgctt
tgcattgaaaaaattaacgaatcggctttttaatatgtttttggataatt
tttttaatacacaagacattttttttggattttgtttttctaattttgag
aTATTCCTTTTTGAAGATGGTTGAAATAATTTCtccgagaaaaaaaaaca
tgaaaatttagaatattttGACAATGAAACCCAATTTTAATGAATATCTc
gaaaatatgaaagaaaatttctggtgaaatttttttattattattataca
taCATATTATTTTCTAACATTTTGTGACAtaggaaaaacgaaaaagataA
CCAAGcaataacaataacaaaatttttgatgaaaaaaaaagtccaagaaa
aatttggaaaaagaaaa Coding sequence (CDS) from alignment at sc0000609:103827..105443 >TCONS_00027219 ID=TCONS_00027219|Name=TCONS_00027219|organism=Clytia hemisphaerica|type=CDS|length=507bp|location=Sequence derived from alignment at sc0000609:103827..105443 (Clytia hemisphaerica)
ATGGCTACGGCAcctttgatttttgatttcgaCACGACATGTTTTACGAC
AAGCACGATAGCTGCAACACCCATCGTATGTGCAACACCGACACCTTCAT
TCTCGCCCAAACGAAAATACAGACCGTCATCCGACGACACGCCGACACAA
ATCAAACGACAACGTCTCTCAACAACGTCAACCAAAACAGTCGAACAACA
AAATGTCGTCTCAGTACCGACTACGCCGCTATACAAAAACTTTGGTAACG
GTATTTCACTATGTAATAACACCAAAAcgaacaaattttcaaatattgag
gaaattttacattttctgACGGAGGAAGAATGCAACACGACGACGACATC
GGCATTAGATCGCTGCAACACGTCGACAATCAGCGACGATATCGCTAACG
AACTCATGATAGAATTAAGTTGCAAGAACGAATTACCAGAACTTAATAAC
GTTTTATTCGATTTAAAAGATGTTTTGAGGTCGAGTGATTTTGACTTCAT
CTTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027219-exon-sc0000609-1491911889:103827..105443 | TCONS_00027219-exon-sc0000609-1491911889:103827..105443 | Clytia hemisphaerica | exon |
| TCONS_00027219-exon-sc0000609-1510915933:103827..105443 | TCONS_00027219-exon-sc0000609-1510915933:103827..105443 | Clytia hemisphaerica | exon |
| TCONS_00027219-exon-sc0000609-1575043694:103827..105443 | TCONS_00027219-exon-sc0000609-1575043694:103827..105443 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000609 | supercontig | sc0000609:103827..105443 . |
Blast
The following BLAST results are available for this feature:
|
