TCONS_00027218 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027218
Unique NameTCONS_00027218
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length615

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027218 ID=TCONS_00027218|Name=TCONS_00027218|organism=Clytia hemisphaerica|type=transcript|length=615bp
ATCAACAAACATGAAGTCTTTTGAGACCAAACTTGAAAAACGGGGTTTTA
AGTGTACTACCACCTTAAAGCCTTATGTTGGAGCACAATACCAGTTgatc
tttgatttttcttctacatttttttatcagatttcTGACCATGAAAACTC
ACTACTTCACCACCACTATTTCATCGCAAGTTACAGAACaggctattcat
gatattcatgacgtaatgttttctacggaaccccggttttagccagtgaT
GGCTAGACAAAATTTGTATGAAATTTGCCACTTCTGgtaaaaaccggggt
ctttccgtagaaaacattacgtcatgaattcTGTCCTCCGATGCAGATTT
TTTGAGACACACTTTATGTACCGGGAAATGTAGGTACTGTATGCACCGGG
AAATGTAGGTACTTCAAAGATGTAGATAAAACGATTAGTAGCATTTAACT
GTTGACTGATATATCATATCATACGAAACTGTGATATCAGTTAAGCCATT
TATCGAAATCATTGGACAAAAATTTGAAGGAATTGTACTGAGTGATAAGC
TATAGTATATGAGAGCTTTCACGGAGGTTACTATCCTTGTAAACTTAAAG
GAGTACACCACTGAC
Run BLAST on NCBI

transcript from alignment at sc0000609:54652..55266

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027218 ID=TCONS_00027218|Name=TCONS_00027218|organism=Clytia hemisphaerica|type=transcript|length=615bp|location=Sequence derived from alignment at sc0000609:54652..55266 (Clytia hemisphaerica)
GTCAGTGGTGTACTCCTTTAAGTTTACAAGGATAGTAACCTCCGTGAAAG
CTCTCATATACTATAGCTTATCACTCAGTACAATTCCTTCAAATTTTTGT
CCAATGATTTCGATAAATGGCTTAACTGATATCACAGTTTCGTATGATAT
GATATATCAGTCAACAGTTAAATGCTACTAATCGTTTTATCTACATCTTT
GAAGTACCTACATTTCCCGGTGCATACAGTACCTACATTTCCCGGTACAT
AAAGTGTGTCTCAAAAAATCTGCATCGGAGGACAgaattcatgacgtaat
gttttctacggaaagaccccggtttttacCAGAAGTGGCAAATTTCATAC
AAATTTTGTCTAGCCAtcactggctaaaaccggggttccgtagaaaacat
tacgtcatgaatatcatgaatagcctGTTCTGTAACTTGCGATGAAATAG
TGGTGGTGAAGTAGTGAGTTTTCATGGTCAgaaatctgataaaaaaatgt
agaagaaaaatcaaagatcAACTGGTATTGTGCTCCAACATAAGGCTTTA
AGGTGGTAGTACACTTAAAACCCCGTTTTTCAAGTTTGGTCTCAAAAGAC
TTCATGTTTGTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015301XLOC_015301Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027218-exon-sc0000609-1491911889:54652..55266TCONS_00027218-exon-sc0000609-1491911889:54652..55266Clytia hemisphaericaexon
TCONS_00027218-exon-sc0000609-1510915933:54652..55266TCONS_00027218-exon-sc0000609-1510915933:54652..55266Clytia hemisphaericaexon
TCONS_00027218-exon-sc0000609-1575043694:54652..55266TCONS_00027218-exon-sc0000609-1575043694:54652..55266Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000609supercontigsc0000609:54652..55266 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.444182	0.258295	0.102183	0.392541	0.839612	0.769538	1.0667	0.661984	1.27449	0.946605	0	0.948409	0.766221	2.03215	1.02023	0.823609	1.45638	0.810852	0.754941	0.705713	1.02913	1.25292	0.605717	0.831594	1.82223	2.84404	0.609856	0.130534	0.393089	0.100234
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027218 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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