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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027217 ID=TCONS_00027217|Name=TCONS_00027217|organism=Clytia hemisphaerica|type=transcript|length=1772bp
AAAAAAAGCGAAGCTGAAGTCCGTTCCAAAAAGAAATTGTCAGTTCGTAA
ATTTTCGATTGTTGCTCTGATCATTAGAAATCACAATACCTCATTGAAAA
GGTGGTTTTGAGTGGATtgaattgaaagttttttctaaagattctaaaaa
gaagaaaaaggtgAGCATTTTTactaattgaataaaaaatttcattttac
aaACTTTTGAAACCTTTGATACCATTTATCTCAAATACGCATGCTGAAAT
TTATCTTTCTTAAGTCAAAAGTGAAAGCCATtctcaaaaagtccaaaatc
cAATTAAAATTGGAGATTTGAGCATTAAACTCTATAAACAGTTACATATT
TTCTGGTTTCCAGTACTTACCCATTATATTAAGAGAGACTTCCCAAATGT
CGACCATAGCGACATAAAACTGTAAGGGGATGGGCCAAAGATTTAGAACT
AGTAACCCGACCTTTCGCAAAATGATTAATAATTAGGCAAAACTAATgct
ctttttcaaaatgacttagcaaaaaatgaaatgctaattgattgcatcat
tggtatcaaaaaatattttttctttagacAAAATACCATGATCGTGTATC
ACTTGTGACACGGGtccttcaaaaaaaaactcaaaatgagACAAAGCGAG
ATGTCGAATTCACGCATGCGTAAAGCTCTCGAGAAGAAGaatatattttg
gttttaagtttttaaaaatcaaaataagtttttgaaaataagaaaaacaa
aaaaagtagtaaataaaaaaaacaaacatgaaaataagttacaataaaca
aacaaaaataatacttttactttaatgtaataaaaaatttctatttttat
ctctATATTCAGGAGCATGGGTTCTAAAGAAAGTTTTCTTGTGATTAAGC
AGTAGGTAACTAACTGTTCATAAACAAGCGGCACCTTCGAGGGGTGGCTT
TAATGGCAGAACCGTTCCTCGATTGACGGGCTTGCATTGAAAGTTTTATA
TTGCCTTCAAATCTCTTAGTTTACTGTAACAGGGTAATTTAATTCTAAGA
GTCACTCCtacaatgattttatattttttaagccTTTATTGAGAGATAAT
TTTCAGAGTAGGGGCTCCTTGAATAGCAGCTTAATCATTCTGCGAGAGAA
ATGTCCACTGAAAATCGaataattgtttaaaaaaagggctGGCTTTAATT
GTATTCTTAATACCCAGTTATCTTTTATTCCAAAACCTATCTAGcaataa
caaataaaaaatggaaACTTGGAATTGGTTTGAGAAACTATaacaaaact
aataaaatgaaaCCTACACGATAACCATCTTGATAAAACgcaaaactttc
gcgattttcacaaattttagcGTTTAACCAGCGAAGTGtagcttttgaaa
atgttgagcAGACCAGAGTCAAAGTCACTCACTACAAGATTATGTATAAA
CGTAAGTTTTTTACATTGTGTAAGGAAAAGAACAGATAAAAGAGGACGGT
AAATTAATCTAAATTTTTATgctaataaaatattttgttttaaacatCTA
AAAAAAACGTGACCACGTACATACACAATGAAGAAAGGGAGGGATAATAA
TGTTAATTTTAATCAGTCTAGGATATTCCGCAAAAGCGGCATAAGTTACA
CATATATCTCAATCGCGGGATATGAACAATGAATAATGTTAACTTTGGTC
AGTCTAGGATATCCTGCATAAGCGGGACGAGAAAAAAGCGAATCGAGTAA
GCAAACATAACGGAAAAGCGNN Run BLAST on NCBI transcript from alignment at sc0000609:29394..31165 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027217 ID=TCONS_00027217|Name=TCONS_00027217|organism=Clytia hemisphaerica|type=transcript|length=1772bp|location=Sequence derived from alignment at sc0000609:29394..31165 (Clytia hemisphaerica)
NNCGCTTTTCCGTTATGTTTGCTTACTCGATTCGCTTTTTTCTCGTCCCG
CTTATGCAGGATATCCTAGACTGACCAAAGTTAACATTATTCATTGTTCA
TATCCCGCGATTGAGATATATGTGTAACTTATGCCGCTTTTGCGGAATAT
CCTAGACTGATTAAAATTAACATTATTATCCCTCCCTTTCTTCATTGTGT
ATGTACGTGGTCACGTTTTTTTTAGatgtttaaaacaaaatattttatta
gcATAAAAATTTAGATTAATTTACCGTCCTCTTTTATCTGTTCTTTTCCT
TACACAATGTAAAAAACTTACGTTTATACATAATCTTGTAGTGAGTGACT
TTGACTCTGGTCTgctcaacattttcaaaagctaCACTTCGCTGGTTAAA
CgctaaaatttgtgaaaatcgcgaaagttttgcGTTTTATCAAGATGGTT
ATCGTGTAGGtttcattttattagttttgttATAGTTTCTCAAACCAATT
CCAAGTttccattttttatttgttattgCTAGATAGGTTTTGGAATAAAA
GATAACTGGGTATTAAGAATACAATTAAAGCCagccctttttttaaacaa
ttattCGATTTTCAGTGGACATTTCTCTCGCAGAATGATTAAGCTGCTAT
TCAAGGAGCCCCTACTCTGAAAATTATCTCTCAATAAAggcttaaaaaat
ataaaatcattgtaGGAGTGACTCTTAGAATTAAATTACCCTGTTACAGT
AAACTAAGAGATTTGAAGGCAATATAAAACTTTCAATGCAAGCCCGTCAA
TCGAGGAACGGTTCTGCCATTAAAGCCACCCCTCGAAGGTGCCGCTTGTT
TATGAACAGTTAGTTACCTACTGCTTAATCACAAGAAAACTTTCTTTAGA
ACCCATGCTCCTGAATATagagataaaaatagaaattttttattacatta
aagtaaaagtattatttttgtttgtttattgtaacttattttcatgtttg
ttttttttatttactactttttttgtttttcttattttcaaaaacttatt
ttgatttttaaaaacttaaaaccaaaatatattCTTCTTCTCGAGAGCTT
TACGCATGCGTGAATTCGACATCTCGCTTTGTctcattttgagttttttt
ttgaaggaCCCGTGTCACAAGTGATACACGATCATGGTATTTTgtctaaa
gaaaaaatattttttgataccaatgatgcaatcaattagcatttcatttt
ttgctaagtcattttgaaaaagagcATTAGTTTTGCCTAATTATTAATCA
TTTTGCGAAAGGTCGGGTTACTAGTTCTAAATCTTTGGCCCATCCCCTTA
CAGTTTTATGTCGCTATGGTCGACATTTGGGAAGTCTCTCTTAATATAAT
GGGTAAGTACTGGAAACCAGAAAATATGTAACTGTTTATAGAGTTTAATG
CTCAAATCTCCAATTTTAATTggattttggactttttgagaATGGCTTTC
ACTTTTGACTTAAGAAAGATAAATTTCAGCATGCGTATTTGAGATAAATG
GTATCAAAGGTTTCAAAAGTttgtaaaatgaaattttttattcaattagt
AAAAATGCTcacctttttcttctttttagaatctttagaaaaaactttca
attcaATCCACTCAAAACCACCTTTTCAATGAGGTATTGTGATTTCTAAT
GATCAGAGCAACAATCGAAAATTTACGAACTGACAATTTCTTTTTGGAAC
GGACTTCAGCTTCGCTTTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027217-exon-sc0000609-1491911889:29394..31165 | TCONS_00027217-exon-sc0000609-1491911889:29394..31165 | Clytia hemisphaerica | exon |
| TCONS_00027217-exon-sc0000609-1510915933:29394..31165 | TCONS_00027217-exon-sc0000609-1510915933:29394..31165 | Clytia hemisphaerica | exon |
| TCONS_00027217-exon-sc0000609-1575043694:29394..31165 | TCONS_00027217-exon-sc0000609-1575043694:29394..31165 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000609 | supercontig | sc0000609:29394..31165 . |
Blast
The following BLAST results are available for this feature:
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