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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027201 ID=TCONS_00027201|Name=TCONS_00027201|organism=Clytia hemisphaerica|type=transcript|length=1937bp
catgaacatataaacgactggacatccatctcctttgtctttttgtagaa
agggctgctagcttcgttgccgcctcgttaaaagcataaaatgaaacaat
agattttgatgatataccacttgggaataccttactaacaacgtcaaaac
ttcgaccaaagtctctgttgttctattcttctcaagtcttttatctatat
cataacaaagataacagaggcaaaatcatcgtcagcttgtcaaaactcta
TCCTTTGATGCAAagtaatttaatttttattacagAGGTACTTTGATGTC
TGATGTCAGctatatgattattttttatcgGAAGTCTCAGCCTCTAGAAG
ATGACCGATGaagtaaaagaaaattatttttcgactTTAATGAACTATTT
TGAATTCCGTGCTCCAATAAAACACCCGGAAAATAAAAGCGGGAAGCGAA
AAATGTTTGTTCCCAAAACTCGTATAAACTCGTGAAAATATATAATCAGA
CGATAAACTAATTATCTAATGATATCAAGATATTGTTTCGGTAAGATCAG
TCAGCGTCCTAGCCTACTGGGTACCCTATAAAAGACCAACCAGTAGCCTT
CTTGTTCAATTCGTAACCAAGGACAAAAATTCTACCATAAGCAAAAACGC
AACCATATTggaacacaaaaacattatgatTCACCGCGTAACCATTTTGT
TTATGACTCTTGCCATATTGGGATCAGCTGAAGCACTTACAAGGTAAGTA
TCAGAATAAAACCTATAGTAGGGCTATGTTTGGTTTTTAAAGTCAACGGG
GGAACAATACTATCAGAATTTTTCCTTAAAAGGATCCTCCAGTTATTTTT
TAAAGCGTTGAAAAAAAACATGGAGCGAAATGTTCAAGCCGTTCATATTT
GTAGAGGAGAAAAAACACGGCGATGATGAATTATACGACAACATCTATTC
TTGAGAAACCAAGTCTCGCCTTAGTCTACATAATAAATATACAGCTCCAG
ACTTTTAGGCCATGGATTTTTATGCTCAAAACGAAGGAaaatatgacgta
gcctagtcTCGCATTCGCATTTGTCCCTGATGGTTCCCTGATGAAGCTCG
CTCTAGTCTTCTCATATAACCTCTACGTTTTACATGAAACACACTTAATA
AAACAAGGGAATGTATTTGAGATTTCTTTAATCTATTACTTTAGATATGT
TTCTGCTCATGCAAACGGCTATGCTCCGCACCATGGTGTGATTGGAGGCT
ATGATGGAGGTCATTCTTATCACGCAAGAGCAGTGGTCGATGGAAAGTGG
GTTCCTGGAAAAGCTGGAGCGTACCCAAATGGGTTGCTTGTGAAAGCAGG
TATCCCATATGGTGGTGCCGAACACCGAAtgcaaaattatgaaattttaa
cATCAACCACGACACATCGTTATCAAAAAATGAAGACAGGTGACAGACCA
CCTGTGAATGGAATAGTTGGAGGTTATGACGGAGGCCAATCATATTTTGC
GAAGGGTGTTATTCATGGTCACACCATCCCTGGTAAAGCGGGCACTGATA
GTCACGGTAACCTCGTTGGTGCATGTTTTGCGTGGGGTGGAAAGGAATAC
AGAATCAACAATTTCTGGGTATTACTTCATAATTAACAATACAAAGAATG
CACTTGTATGATAGATCAGTATGGAACTTTTCTTTGAGGGGATTTtaata
aaatgatattttattatttcttaaAGGATTATCAGATGTCTGGTGTGTTC
TGTAGAcatcccgggggggtactaggattgatgggtgtcgggtatgtgcg
tgccagacCTCTGGACCCTTAGCCTTAGAGAaactgaattttggtgaaaa
ggtgacccttagagagactcagtgtagaaaaacccaacccttagagagac
tttttcacaaaaaatttctataatggGCCAAAGAAAT Run BLAST on NCBI transcript from alignment at sc0000609:52225..54508- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027201 ID=TCONS_00027201|Name=TCONS_00027201|organism=Clytia hemisphaerica|type=transcript|length=2284bp|location=Sequence derived from alignment at sc0000609:52225..54508- (Clytia hemisphaerica)
CATGAACATATAAACGACTGGACATCCATCTCCTTTGTCTTTTTGTAGAA
AGGGCTGCTAGCTTCGTTGCCGCCTCGTTAAAAGCATAAAATGAAACAAT
AGATTTTGATGATATACCACTTGGGAATACCTTACTAACAACGTCAAAAC
TTCGACCAAAGTCTCTGTTGTTCTATTCTTCTCAAGTCTTTTATCTATAT
CATAACAAAGATAACAGAGGCAAAATCATCGTCAGCTTGTCAAAACTCTA
TCCTTTGATGCAAAGTAATTTAATTTTTATTACAGAGGTACTTTGATGTC
TGATGTCAGCTATATGATTATTTTTTATCGGAAGTCTCAGCCTCTAGAAG
ATGACCGATGAAGTAAAAGAAAATTATTTTTCGACTTTAATGAACTATTT
TGAATTCCGTGCTCCAATAAAACACCCGGAAAATAAAAGCGGGAAGCGAA
AAATGTTTGTTCCCAAAACTCGTATAAACTCGTGAAAATATATAATCAGA
CGATAAACTAATTATCTAATGATATCAAGATATTGTTTCGGTAAGATCAG
TCAGCGTCCTAGCCTACTGGGTACCCTATAAAAGACCAACCAGTAGCCTT
CTTGTTCAATTCGTAACCAAGGACAAAAATTCTACCATAAGCAAAAACGC
AACCATATTGGAACACAAAAACATTATGATTCACCGCGTAACCATTTTGT
TTATGACTCTTGCCATATTGGGATCAGCTGAAGCACTTACAAGGTAAGTA
TCAGAATAAAACCTATAGTAGGGCTATGTTTGGTTTTTAAAGTCAACGGG
GGAACAATACTATCAGAATTTTTCCTTAAAAGGATCCTCCAGTTATTTTT
TAAAGCGTTGAAAAAAAACATGGAGCGAAATGTTCAAGCCGTTCATATTT
GTAGAGGAGAAAAAACACGGCGATGATGAATTATACGACAACATCTATTC
TTGAGAAACCAAGTCTCGCCTTAGTCTACATAATAAATATACAGCTCCAG
ACTTTTAGGCCATGGATTTTTATGCTCAAAACGAAGGAAAATATGACGTA
GCCTAGTCTCGCATTCGCATTTGTCCCTGATGGTTCCCTGATGAAGCTCG
CTCTAGTCTTCTCATATAACCTCTACGTTTTACATGAAACACACTTAATA
AAACAAGGGAATGTATTTGAGATTTCTTTAATCTATTACTTTAGATATGT
TTCTGCTCATGCAAACGGCTATGCTCCGCACCATGGTGTGATTGGAGGCT
ATGATGGAGGTCATTCTTATCACGCAAGAGCAGTGGTCGATGGAAAGTGG
GTTCCTGGAAAAGCTGGAGCGTACCCAAATGGGTTGCTTGTGAAAGCAGG
TATCCCATATGGTAAGCCTTTCTGAAATTAAATTTTGTTAAACATTTTTC
ATGTCAGATAGCATTGACAGGCTAATTTTCTAAAATACTGACCCACCCAC
TAAAAGATCATCGGGGAGAATAAAGTTATGGGCGAGTGACTCATATTTTG
GGGTAGTACAATTGACTCTCTAATTCGATCTCAAAGATACCAAGAAGTTT
TCAAAATAAAGAGAGTATTTTGTTTGGCTTTCAAAGCTGAAGGAAACAAT
ATTTTTTTTCAAATTACCGAAAGATTCGAATCAGAAAGAGAACAGCTGCT
AAAACTTTCTAAAGTTAACGAGTGATATACGTTGATATTTCCATTTTTAT
TTCTTCAGGTGGTGCCGAACACCGAATGCAAAATTATGAAATTTTAACAT
CAACCACGACACATCGTTATCAAAAAATGAAGACAGGTGACAGACCACCT
GTGAATGGAATAGTTGGAGGTTATGACGGAGGCCAATCATATTTTGCGAA
GGGTGTTATTCATGGTCACACCATCCCTGGTAAAGCGGGCACTGATAGTC
ACGGTAACCTCGTTGGTGCATGTTTTGCGTGGGGTGGAAAGGAATACAGA
ATCAACAATTTCTGGGTATTACTTCATAATTAACAATACAAAGAATGCAC
TTGTATGATAGATCAGTATGGAACTTTTCTTTGAGGGGATTTTAATAAAA
TGATATTTTATTATTTCTTAAAGGATTATCAGATGTCTGGTGTGTTCTGT
AGACATCCCGGGGGGGTACTAGGATTGATGGGTGTCGGGTATGTGCGTGC
CAGACCTCTGGACCCTTAGCCTTAGAGAAACTGAATTTTGGTGAAAAGGT
GACCCTTAGAGAGACTCAGTGTAGAAAAACCCAACCCTTAGAGAGACTTT
TTCACAAAAAATTTCTATAATGGGCCAAAGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027201-exon-sc0000609-1575043694:53148..54508 | TCONS_00027201-exon-sc0000609-1575043694:53148..54508 | Clytia hemisphaerica | exon |
| TCONS_00027201-exon-sc0000609-1575043694:52225..52800 | TCONS_00027201-exon-sc0000609-1575043694:52225..52800 | Clytia hemisphaerica | exon |
| TCONS_00027201-exon-sc0000609-1510915933:53148..54508 | TCONS_00027201-exon-sc0000609-1510915933:53148..54508 | Clytia hemisphaerica | exon |
| TCONS_00027201-exon-sc0000609-1510915933:52225..52800 | TCONS_00027201-exon-sc0000609-1510915933:52225..52800 | Clytia hemisphaerica | exon |
| TCONS_00027201-exon-sc0000609-1491911889:53148..54508 | TCONS_00027201-exon-sc0000609-1491911889:53148..54508 | Clytia hemisphaerica | exon |
| TCONS_00027201-exon-sc0000609-1491911889:52225..52800 | TCONS_00027201-exon-sc0000609-1491911889:52225..52800 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000609 | supercontig | sc0000609:52225..54508 - |
Blast
The following BLAST results are available for this feature:
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