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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027199 ID=TCONS_00027199|Name=TCONS_00027199|organism=Clytia hemisphaerica|type=transcript|length=3072bp
CACATActtaattaaatttttctctttttaaatcgTTTGGTTTGTGTTAA
TAATGCCAAATATTCTAAAATCTattctataaaaagaaaaaaaacaaaca
aatctaCTGGCAAAAAGTCATAGGAAAAACAGATGAGAAAGTCTCGATGG
CCTGTAGTCGAGGGCAAGACTTTTAGCCTTTTAGTAGCAATTAATAACAA
AAAGCAGAATCTACCACAAGAACTAACTTTTGAGACTCAAAAAAAGGGGC
AGTAAACCTTCgacaaaaaagttaataatgCGAAGGAAAGAACGAAACAT
TAgacaaattgaaataaaaaataaaagcgTTACGATAAACTAAGATCATA
AAAGCTTACATTATAATAGTtaaattttccctaaaaatacTATTAAAAAC
TGATAATGTTGTTGGCATGAAAGCTAACTGTCTAAAGTAAGGATAAAATA
TCGGTGGAAGACACCTAAAATAAAGTACTGTAGTAgaagcaaaaactttt
ttttgaaggaAGCTCAAATAACAAAAGCCTGTCTTGTATTTGAGCACAGA
AAAGCGAAAAAGAGGCAAtcataaaaatcaagaaaaggtTTTACATAAAA
ACAAAGTGAaccttcaaagaaaaattgaattttttttaactaagCATAAA
ATTAGCAGACATTATTTGTGAAAATtagaggaaaaaatatttctgaaaaa
aaactatGGCAGGAATAAGCTAAATCAACATTAATTAACAAAACTTAGCA
ACAATATTCGcagtaattttcaaaatatacacTATTGTTATTTCCATCTC
AAGTCAAAAGGttaaggttaaaaaaattaacaagcaaaAACATTCAGGAT
AGCTCACGCACTTAAATCAAACAAGGAATTAAAGGTGTTCCTCAgttgtt
tttttggcaaaaaaaggGAAGTTTTGAGGCCGAAAACCAAAAAATTAGCC
AAGGTATGCTTATAAGAAGTTTATAgaaaaattcagaatttttgTTTAAT
AAAACTCGACACAAAATTCTGGACTGGCTGCTCTTTATAATCTacgtaaa
taaaataaaaatgaaaaatttctgttttagaggaaaaaaaacaaaacaaa
actaacaaacaaacaaggaatggcgaaaaataagaacaaaataactGAAA
ACAGGTGCCTCGAAAAGCATTTCACAACCCccttaaataaaagaatttaa
aattccaAATGTAGATTAAAACGTCATTCTAGTACCTGTACTTTTAGAGA
GTTCGGTTgtttctcaaaaagttaaaaagaaagccacaataaaaaaaaca
aacaacaacaataacaaaaacaataaacaaatGAATGATTACTATGTTAA
AGTTAGGTCCCAAGAGAAAATTGAGATAAAAATCACTAAAAggaaatatt
tctttgtttaaaagtaacccttttataaaaaaagattgtAAAAAATAATA
CATAGTATCAGAAATTGCAATTAAAtcattttaattatattttttgttgt
tgggTTAAAATAATAAATCTATTGAAGCATATCACGTAAGATGATTGGTG
CAGAGAGGAAATAATggacattgggcttttccagaaaaaaaatgaatatc
ggGGAGGGGGGTGTAGGATATGacgttttttggaaatttacccacATAGT
GAATTATGACCCCCTGACAACAGATATTACCCCAGAAGGCATCAGTTGAG
CAGagcaaatttgccccccaaacaAGGCAAATTCTACAAATTTTTCACta
acccccggacaaaatatccaatatatccaaaaattttctggaagagctca
TTCTTACTAATAAATCCAAATACACACGATCACGTGATAtcaaaagcata
aaaaagagGGGTACGATGATGTGTTACGTCACAGAGGGTTGATCCCAATT
TTCGAAGTTTTAAGCCATGCTCTCGTCAGCTGATACGGGACCGACAAATT
TCGCATGCATTTCTCACGACCCTTTTCTATGAAGACCGTATAACTATTAA
TCAAAACAAGAATCGGATGTTAAATTGACTCTAGTGTCATTACATTAAGT
CAAACCTTTCGAATTATCTTGAAAAGTTTCTAATTTTAGAGTTCGTCTAT
GACGATACAACaaagaaacataaaaatcacaaatattatataaaaatcaT
AGAATAActatacaagtttttttttcatacaattctaaagccataaaaaa
cacaacacaatttatatttttttgtctactggtaaagaaaacaaaaagga
tCGGGGTGTCATCCTACAttcaaagatttcattatcattAAATACATAAA
ATCTCGTTTATGCAtgacataaaaaaaacattttattcatGTCTTAGCTA
GCCTTACCTTTCACATTACCACATTAATTTAGCGGATTGTATATCGAATA
CCGTACTTCCTACATAAAGTGCCACCCTCCGTCTAATAAGCATTCAAATG
CAGCTCTTATTAGAGTTTGAAGTTTAAAGattgttttctttattcatttt
ttttaagtaaGAAAAGAGAAAACATCACAATCCTGTTAATATTCTTTCTT
AAAAGTTCGGTTTCTAACTCCCCGGATAGAGCCCAAAGTTTATTTTATCA
ACCGACGAATCaatcaaatttgtaaaaaaagtgaatacTTCAGAAACTTG
GAAACTCGCATTTTCGAAATAAGCATCTCCGTCGCACCTAAAATTAAATG
AGCCCCGTAGCGCTTATTTGAGGAAATACGGTATCCGATTTGATTCGGTT
CCCATCCAAGTCAACATGAAAATCCATTCTTTTTATCAATTGGTTAAGGT
GATCTTAAAAACCCTGGATCACATACCAAAACCAGAATGGAGATTGCAAT
GCAACTAAACCAGCTTCTTTTGAAAGACAGAGCATCTCGATCCGCCTCAT
CCATCCCCAACAACTAGTTAACAACTACACTACCTCTTTTTCACCACCTC
GTCATTCTTACTACATTCACCAAAGGTCAGTTCTTGTTATCCATGTGTTT
CATCAAAGCTCTGGACACGTACAGTAACGCTGCTTGAAATCTTGACTCTA
ACACTAACAAGTTGATGTGAAC Run BLAST on NCBI transcript from alignment at sc0000609:4218..7349- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027199 ID=TCONS_00027199|Name=TCONS_00027199|organism=Clytia hemisphaerica|type=transcript|length=3132bp|location=Sequence derived from alignment at sc0000609:4218..7349- (Clytia hemisphaerica)
CACATACTTAATTAAATTTTTCTCTTTTTAAATCGTTTGGTTTGTGTTAA
TAATGCCAAATATTCTAAAATCTATTCTATAAAAAGAAAAAAAACAAACA
AATCTACTGGCAAAAAGTCATAGGAAAAACAGATGAGAAAGTCTCGATGG
CCTGTAGTCGAGGGCAAGACTTTTAGCCTTTTAGTAGCAATTAATAACAA
AAAGCAGAATCTACCACAAGAACTAACTTTTGAGACTCAAAAAAAGGGGC
AGTAAACCTTCGACAAAAAAGTTAATAATGCGAAGGAAAGAACGAAACAT
TAGACAAATTGAAATAAAAAATAAAAGCGTTACGATAAACTAAGATCATA
AAAGCTTACATTATAATAGTTAAATTTTCCCTAAAAATACTATTAAAAAC
TGATAATGTTGTTGGCATGAAAGCTAACTGTCTAAAGTAAGGATAAAATA
TCGGTGGAAGACACCTAAAATAAAGTACTGTAGTAGAAGCAAAAACTTTT
TTTTGAAGGAAGCTCAAATAACAAAAGCCTGTCTTGTATTTGAGCACAGA
AAAGCGAAAAAGAGGCAATCATAAAAATCAAGAAAAGGTTTTACATAAAA
ACAAAGTGAACCTTCAAAGAAAAATTGAATTTTTTTTAACTAAGCATAAA
ATTAGCAGACATTATTTGTGAAAATTAGAGGAAAAAATATTTCTGAAAAA
AAACTATGGCAGGAATAAGCTAAATCAACATTAATTAACAAAACTTAGCA
ACAATATTCGCAGTAATTTTCAAAATATACACTATTGTTATTTCCATCTC
AAGTCAAAAGGTTAAGGTTAAAAAAATTAACAAGCAAAAACATTCAGGAT
AGCTCACGCACTTAAATCAAACAAGGAATTAAAGGTGTTCCTCAGTTGTT
TTTTTGGCAAAAAAAGGGAAGTTTTGAGGCCGAAAACCAAAAAATTAGCC
AAGGTATGCTTATAAGAAGTTTATAGAAAAATTCAGAATTTTTGTTTAAT
AAAACTCGACACAAAATTCTGGACTGGCTGCTCTTTATAATCTACGTAAA
TAAAATAAAAATGAAAAATTTCTGTTTTAGAGGAAAAAAAACAAAACAAA
ACTAACAAACAAACAAGGAATGGCGAAAAATAAGAACAAAATAACTGAAA
ACAGGTGCCTCGAAAAGCATTTCACAACCCCCTTAAATAAAAGAATTTAA
AATTCCAAATGTAGATTAAAACGTCATTCTAGTACCTGTACTTTTAGAGA
GTTCGGTTGTTTCTCAAAAAGTTAAAAAGAAAGCCACAATAAAAAAAACA
AACAACAACAATAACAAAAACAATAAACAAATGAATGATTACTATGTTAA
AGTTAGGTCCCAAGAGAAAATTGAGATAAAAATCACTAAAAGGAAATATT
TCTTTGTTTAAAAGTAACCCTTTTATAAAAAAAGATTGTAAAAAATAATA
CATAGTATCAGAAATTGCAATTAAATCATTTTAATTATATTTTTTGTTGT
TGGGTTAAAATAATAAATCTATTGAAGCATATCACGTAAGATGATTGGTG
CAGAGAGGAAATAATGGACATTGGGCTTTTCCAGAAAAAAAATGAATATC
GGGGAGGGGGGTGTAGGATATGACGTTTTTTGGAAATTTACCCACATAGT
GAATTATGACCCCCTGACAACAGATATTACCCCAGAAGGCATCAGTTGAG
CAGAGCAAATTTGCCCCCCAAACAAGGCAAATTCTACAAATTTTTCACTA
ACCCCCGGACAAAATATCCAATATATCCAAAAATTTTCTGGAAGAGCTCA
TTCTTACTAATAAATCCAAATACACACGATCACGTGATATCAAAAGCATA
AAAAAGAGGGGTACGATGATGTGTTACGTCACAGAGGGTTGATCCCAATT
TTCGAAGTTTTAAGCCATGCTCTCGTCAGCTGATACGGGACCGACAAATT
TCGCATGCATTTCTCACGACCCTTTTCTATGAAGACCGTATAACTATTAA
TCAAAACAAGAATCGGATGTTAAATTGACTCTAGTGTCATTACATTAAGT
CAAACCTTTCGAATTATCTTGAAAAGTTTCTAATTTTAGAGTTCGTCTAT
GACGATACAACAAAGAAACATAAAAATCACAAATATTATATAAAAATCAT
AGAATAACTATACAAGTTTTTTTTTCATACAATTCTAAAGCCATAAAAAA
CACAACACAATTTATATTTTTTTGTCTACTGGTAAAGAAAACAAAAAGGA
TCGGGGTGTCATCCTACATTCAAAGATTTCATTATCATTAAATACATAAA
ATCTCGTTTATGCATGACATAAAAAAAACATTTTATTCATGTCTTAGCTA
GCCTTACCTTTCACATTACCACATTAATTTAGCGGATTGTATATCGAATA
CCGTACTTCCTACATAAAGTGCCACCCTCCGTCTAATAAGCATTCAAATG
CAGCTCTTATTAGAGTTTGAAGTTTAAAGATTGTTTTCTTTATTCATTTT
TTTTAAGTAAGAAAAGAGAAAACATCACAATCCTGTTAATATTCTTTCTT
AAAAGTTCGGTTTCTAACTCCCCGGATAGAGCCCAAAGTTTATTTTATCA
ACCGACGAATCAATCAAATTTGTAAAAAAAGTGAATACTTCAGAAACTTG
GAAACTCGCATTTTCGAAATAAGCATCTCCGTCGCACCTAAAATTAAATG
AGCCCCGTAGCGCTTATTTGAGGAAATACGGTATCCGATTTGATTCGGTT
CCCATCCAAGTCAACATAAAAATCCATTCCNGGAAATACGGGACCCGATT
TGATTCGGTTCCCATCCAAGTCAACATGAAAATCCATTCTTTTTATCAAT
TGGTTAAGGTGATCTTAAAAACCCTGGATCACATACCAAAACCAGAATGG
AGATTGCAATGCAACTAAACCAGCTTCTTTTGAAAGACAGAGCATCTCGA
TCCGCCTCATCCATCCCCAACAACTAGTTAACAACTACACTACCTCTTTT
TCACCACCTCGTCATTCTTACTACATTCACCAAAGGTCAGTTCTTGTTAT
CCATGTGTTTCATCAAAGCTCTGGACACGTACAGTAACGCTGCTTGAAAT
CTTGACTCTAACACTAACAAGTTGATGTGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027199-exon-sc0000609-1575043694:4585..7349 | TCONS_00027199-exon-sc0000609-1575043694:4585..7349 | Clytia hemisphaerica | exon |
| TCONS_00027199-exon-sc0000609-1575043694:4218..4524 | TCONS_00027199-exon-sc0000609-1575043694:4218..4524 | Clytia hemisphaerica | exon |
| TCONS_00027199-exon-sc0000609-1510915933:4585..7349 | TCONS_00027199-exon-sc0000609-1510915933:4585..7349 | Clytia hemisphaerica | exon |
| TCONS_00027199-exon-sc0000609-1510915933:4218..4524 | TCONS_00027199-exon-sc0000609-1510915933:4218..4524 | Clytia hemisphaerica | exon |
| TCONS_00027199-exon-sc0000609-1491911889:4585..7349 | TCONS_00027199-exon-sc0000609-1491911889:4585..7349 | Clytia hemisphaerica | exon |
| TCONS_00027199-exon-sc0000609-1491911889:4218..4524 | TCONS_00027199-exon-sc0000609-1491911889:4218..4524 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000609 | supercontig | sc0000609:4218..7349 - |
Blast
The following BLAST results are available for this feature:
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