TCONS_00027180 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027180
Unique NameTCONS_00027180
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1576

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027180 ID=TCONS_00027180|Name=TCONS_00027180|organism=Clytia hemisphaerica|type=transcript|length=1576bp
AATAGATAtcattcaaattattttcaaaaattttcctgtttCGTTTGCAG
AAATATTTATCAAGTTGCCTGGAACTAAGATTAATAATGAAGTTCTcaag
tcaaattattttttattcctAGCAAcaattttgttccttttttcaTCTCC
TGGATGAAGTGTAATTTATTTTGACCTACAATCTTAATATGGTGAACTTT
GTTACTCGAGCGTAGAGGTTTTTATGATGATACTTTTTGTACTTTGGCCG
AGAGGTACGGACAAAACGCAGCAATTTATGAGCTGTGATGGAGAGCAGAA
TAGTTTATGGTGATTTTGGAACTCCACCGTTGAGTATCTTAAATATTGAG
ATAAAGAGAACGAAGAGCGAACGGATTTCATTCGTTAAAGACATCTGCAG
TAGGTGCATCGTAATAAAATTTTGACGGTGGAAAACTTCTATAGTAGCTT
CATTATGCATTGGCAAATTTTGGCTACCATTTTGTTTGTGGTCACTATTA
GTAACCATGTTTATGGGAAAGCCGCAATGGATGATGGTCCTGTTTTCTCC
GAAGCAGAAGATGAAATGGTCATTAAACTGTTGGACGAATTCCGTGCACC
TTCACAATCAGCTGATGAATTAAACGATGAACCCAGTGGACCTTCTTTCG
ACGAATCTTTTCGACGTTCATTTTCGAGTCACAAAGATTTTTTACGAGCA
TTAAAAGATGATATCGAGAGACATGAGCGTAAACGTGGTGTTCTTAGTTG
TGCGAAAGTTGACCAACCTTCAAatTGTCCGGGAAGAAAAGAAGTCAACG
GCTGTGGAACAGACatgttttcgaaaattcctttccCCTTCCGAGATACG
ATGACTGCTTCATGCAATAAACACGATATTTGTTATGGATGTGGTTATTC
ACGAAAATGGACACAATCAGATTGCGATAGCCAGTTTAAAGATGACATGT
ACAAAAAATGTGATTGCAAATACAAGGATGATTGGTGGTGGACAAGAACA
CCATCAGTTTTAGCCTGTAAGACTACTGCTTTCTCCATGTATCAGGCTGT
TACCTGGTTTGGTTCAGGAGCTATCTCCAAACAAGATGAACATTACTGCC
ACGATAGCTGTATCTTACCTTATGGTAGCCCAACTATCGCCCTTTATCCT
TAGATTAATAACtatctaattttgatttttaatggtgattcatgatatgc
aacactggagagtcttctgagaattttcaaaaagttccacccaatacgtc
actttttctattgtttaaatgacgtattgggttgaactttttgaaaattc
ttggaagactctccagtgttgcatatcatgaatacacctTTAAAACGTTA
GGGAGACTGGGTTTGAAACTACCCTGAAAGAATGACGTCAGAATGTATGA
AGTCGTTGCAGCTTTGACTTTCTCATAGACAAAGCATTTTGGCGTCATTT
TCTTATAGATTCATCACTAGTCTCCTGAAAAGCCGTTTTAAAGGTTAATA
AGTGCATTTAAGCAAATTTTACCTACATGAAATGCAATTATATGTTTAAT
TAAAAGAGAATACTATAAAATATTTC
Run BLAST on NCBI

transcript from alignment at sc0000608:145667..151931-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027180 ID=TCONS_00027180|Name=TCONS_00027180|organism=Clytia hemisphaerica|type=transcript|length=6265bp|location=Sequence derived from alignment at sc0000608:145667..151931- (Clytia hemisphaerica)
AATAGATATCATTCAAATTATTTTCAAAAATTTTCCTGTTTCGTTTGCAG
AAATATTTATCAAGTTGCCTGGAACTAAGATTAATAATGAAGTTCTCAAG
TCAAATTATTTTTTATTCCTAGCAACAATTTTGTTCCTTTTTTCATCTCC
TGGATGAAGTGTAATTTATTTTGACCTACAATCTTAATATGGTGAACTTT
GTTACTCGAGCGTAGAGGTTTTTATGATGATACTTTTTGTACTTTGGCCG
AGAGGTACGGACAAAACGCAGCAATTTATGAGCTGTGATGGAGAGCAGAA
TAGTTTATGGTGATTTTGGAACTCCACCGTTGAGTATCTTAAATATTGAG
ATAAAGAGAACGAAGAGCGAACGGATTTCATTCGTTAAAGACATCTGCAG
TAGGTGCATCGTAATAAAATTTTGACGGTAAGTTGTCGATTTCATTTTAT
ATACAGTTGACGCTCTCTAATTCGATTTTCAAGGGGAATTGGATTTTCAT
CGAATAAGGGAGCTTATCGAATAAGGGAGCCTATCGAATAGTAGAACGTC
AAATTAGAGAGTGTCAACTAGATTTCGCCTGGACTTTTTTCCCGCCTACC
AAAAATCTAAAATTTTGGATAAAATAGACAAAATTTCGTAAATCTATTTT
TCTTTTATTCTATTAGGGGTTTTGGCAACATCTCGATTTTAAGTTTTTTG
CAAACACTCTCATACCCACGAAAATCGCAAAATTCACTAAAATTGTTGAA
ATTAAGCCATGCGAAACTTCAATTTTAGACCAGCAGAAAGTCGTTATCAA
ACCGTGGTGGTCCTGATCACCGATGATTTCTTTCGACCATGAAATTACGA
ATATTCATGATATTCATGATGTAATCTTTTATACGGAAGCACACAAAATA
ATCCGGAACTAGTGGCAAAATTTGCCACTAGTCTTTTGTTATTTTGCCAC
TAGTTCCGGGTTATCTCGGGTGCTTCCGTATAAAAGATTACGTCATGAAT
ATCATGAATCCCAATTTCTAGATTTTCCTTAAATCAGTGACAAAATCAAA
AATCAGTCTATATATTTTTTACATAAGTATTTCCAAACCCGAAAGAAATC
CTCCTTTTTTCTTTGGCTTAATGAAATTTTTATGGTATAACCAACCATTT
GCTTTATCAAAGAATTCTTCAAAGTAAATTCATGAAAATTTTCTGACAGT
TTTCTTTTCGTTTCTTTTTCTAGGTGGAAAACTTCTATAGTAGCTTCATT
ATGGTAAGTTTACTTCTCTACATACTGTTACATACATGCTTGAGCTTTCT
AGTAATAAAATCCGGGGGGGGCACTCGATTCAAAAACGACCATACCAGCA
GCCCTAAATTAGGCATTGGAAATCGGACCCTTACAGTGCAAAGAAGATTT
TGCAAAATTTGAGCAAACTTTAGCTTTAACTTTAAATCGACCCTTGCGGT
GCATTTTCTTGAAAATATCTGACAATTTTCTGGCAAAATATGGTCAGATT
TTCAAAATTAGATTGCGATTTTTTTCATCTTTGCTTATTTCGACCCTTAC
AGTACACTTTGGGAAGATATATGGGAAGAAATATACTCTTAAGGGCTGCA
CGTATGATAGGTCATTTACCTTGAGTGCCCCCCCCGGGAATAAAATCCCT
TTCAGCTAAAAAATTTTGGATGTTCTTATAAAAAAGCGTGTAAAATAAAG
AAAGTAAGAATATTTTAATGGCATTTTTAGACTTAAGACTCAAAAAGTTA
AGAACATCTGAAGGCTTCAAAAAATGTAATGGCACTGGTTCGTTGTTCGT
CCCATTGATTTCAATTTAGCTAGATTTTAACCTCATGGATGGAAAATGAA
GCAATTTATTTCCCATCCAAAACGTGTCACCCACGTGGTTTTTGCACAAA
CGCTAGATTGAAAGTAAAACCTATCTTCAGATTTCAGTTTTCACTCTTTC
TTGCTGGAGAAAGGTCGAAGATTCCTCTCTAGCCCCTATGGGCTTTAAAT
TCAATGGTTTGCCCGTCCAGACACGGAAAATTTCACTTTCACTCACTAAG
TGCCTACCAAATATATCCATCTCGACTAAATAAACATAAATATTTAAACA
AACAATGAAAAGAACAAAATCCTTAATTAGGCATTTTGTTGATTTTTGAC
AACGTGGTGTTATATCCATCTTTAAAAATACCAAAAAATTTTCATTGAGA
GATTTTCTTACAAACCATACTGAGAAAAGTTGTTAATTAGCAAAAGTATT
ACTCCTGAAACAGGAAAAGTGAAATGTTCATTATCCGTCTGCTAATTAGG
CGTTTTGTATACAATGAGTACCGCGAAATTTCAATTCATCAATTCCATAT
ACAAAAAATAATTCAGCCTTGTTTCCTAAAAATTTCAAAAGAGAGAAAAT
TTCAAATTTTTATTTTCAATTGAAATTTTTTTTTCTAAAAATAATTTGAG
TGCCATCATGAAAGAAATTTGATAAAAGAAAAAATGACAGAAAATCAAAA
TGGCAATTTTGAAAATAATCAAGATTAATTTTTCTAATTCATTATAGCAT
TGGCAAATTTTGGCTACCATTTTGTTTGTGGTCACTATTAGTAACCATGT
TTATGGGAAAGCCGCAATGGATGATGGTCCTGTTTTCTCCGAAGCAGAAG
ATGAAATGTGAGTCATTGTTTTTCAATACGAGGGGATTATTTTCGCTAAC
CTTTATGAACCCTGGGTTGAAACGTTTTCTAACCGAAAATTTCATTGAAT
TAAATATTGACCCATATAGAATAGTGGCACCGTTAGGCTAACATTTTTTT
TAAACTTCAGTCAATGATGACGGACTTAAAATCTAACTTAAATCCATGGA
TTAAAAAGATTAGTTATTTTCTTCGAGTCTTACTGGATACCGGTCGGTTG
ATGTTAAAAGCAATGGCCGTGAGAGTGCCTCTGCTCATGGACATGTTTTA
AGCATACTGACAAATCAAATAAAGTTAAAGTATCATTCTAAGAGCGATCA
TTTTTACGAAACTCTGTTTTCAATCAACATACATTATTTACCTAACAATT
GTTTGGCAACCTTGCACTCAGTGCAATTTTCACCACATTTTGAAAACTGT
TCCTTGTACCACTTTTCCGGGAACTTTATTCCGAAATGCCAAAGCTTTCG
CTATAGCTAGCTCAGAATTCTGAACACTACAAGAATTATATAAATAGGAA
TTAAGGGACCAGGCCACAAATTATACCTTTTGTTTTATTCACTTTATGAC
AGGGTCATTAAACTGTTGGACGAATTCCGTGCACCTTCACAATCAGCTGA
TGAATTAAACGATGAACCCAGTGGACCTTCTTTCGACGAATCTTTTCGAC
GTTCATTTTCGAGTCACAAAGATTTTTTACGAGCATTAAAAGATGATATC
GAGAGACATGAGCGTAAACGTGGTGTTCTTAGTTGTGCGAAAGTTGACCA
ACCTTCAAGTATGTTCATGTTCTGTTCTCAGAGGTCTTAGTGCACCGAAA
ATGATTATGATAGGTTGAAGTGCTCTTCTTTCAGATGTCTTTTTAAAGGG
TCTAGCAAGTTGTATAACTGTCTCTATTGCGTTGAAAGGATATTCAGAGT
AGCTATAATGCACATTTATTCTGTAAGAATATACTCTATGAAAATTCATG
ATGAAATTGGGCGAAGAAATAAAAAATTAAAAAAGAGTATCACCATAGAT
TTGGCAACTGACCCTATGAGAATGTAATCGAAAAATCAATCGACCTGAGC
ATCCCGATTTCTACTTTTTCATTTTCCAGATTGTCCGGGAAGAAAAGAAG
TCAACGGCTGTGGAACAGACATGTTTTCGAAAATTCCTTTCCCCTTCCGA
GATACGATGACTGCTTCATGCAATAAACACGATATTTGTTATGGATGTGT
AAGTTTACCTCCCATTTGCACGTTTATCAGTATTAACCTGTTTCTTTTAG
TCAATTTCATTTTATTCGTGCACTTGAATATTTGCTACTACCACCAAGAT
CTTCACTAGGGGCCGTTTCACCCAGGCTCGCGCCGAAGTTATCTAGTTAT
CTGTTATGTGGAGATTACCCTTCAAGAAAAAAGTTGAAAAAATTGATTTT
CGTCATCATCCAATGGACTTTGGGATTCAAGAATTATTTCCAATTGTTGT
TAGCTTTGTAAAACATACTAAAAGAGGATACACGTTTTTTTTTATAAAAA
CATCCAAAATTGTTGAAGCCTTCGGATGTTCTTAACTTTTTGGGTTTCAA
GGCTAAAAATATTCTTAAACATGTTCTTATTTTCACCATTTTTGAGTATT
TTTGTGCAATTTCCTAAGAAATTGGGTGTTTTAAAGTCTGCAAAGCCTTA
AGATGTTCTTAACTTGTTCTTAACATTCTGGCCATCGAGGCTTTATGTTC
TTATATAGTTTGTTCTTATTAAAAACGTGTATATGAATCTTAGAAAAAAT
AGTACGCTTAGATTCTACTTTTGTCTCACACATGTTTTGCTCCTGACTAT
ATTCAGGGTTATTCACGAAAATGGACACAATCAGATTGCGATAGCCAGTT
TAAAGATGACATGTACAAAAAATGTGATTGCAAGTGAGTTCATTTCATTT
CTTCTCCTAAAAATTAACCACAAAATTGTAAAGTTTCTTCCATCCCAGAC
TGATTTCCGTCACAAAGTTTATGAAAAATCTGTGACACTTGAAGAGACTT
TTAAAATGCCTATTTTTCCCTAAGTATGTTTCCTTTTTTTTCCTTTTGCA
ACCGAGTGTCTTTTCCGTCCTTCTAATAATCGTACTCTCAAATCCTAAAT
ATTTGATTAACAGAAGTATATTACCAAGAAACTTGTAGAGGGTTTTTATT
TTCTCCTCATAGAGTGCTCGATAAGTTAATACAGCGTTACCAATTATCAG
TGAATTATTTTTTCTTTTCACTGACGATTGGTGCCTGAGCACCATGAATG
AAACTCTGAGTTTGAAACATAGATATTGTGTCAACTCTTTATTATATTAT
ATTAATAAGAAGCATCCCTTTCCTCTGTCAATAGAATTGGGCTTTTCCAG
AAAAAATTTGAATATGGGATGGATGGAGGATATATCATATTTTGGAAATT
TACCTCCGGATATTGTGAATTTTGACCCCCCCCCAGACAACGGATCTCAC
CTCCCGGACAAGCATCAGTTGACCCTACGGACATATTCAAAATCACCCCT
AATCAGAAATCAAACTTTCCAGTTTTTTCCCCCCCCCCCCCCCGGACAAC
GGATCTCACCTCCCGGACAAGCATCAGTTGACCCTACGGACATATTCAAA
ACCCCCCCTAAACAGAAAACAAACTTTCCCGTTTTTTCCCCCCCCCCCCC
CCGGACAACGGATCTCACCTCCCGGACAAGCATCAGTTGACCCTACGGAC
ATATTCAAAACCCCCCCTAAACAGAAAACAAACTTTCCCGTTTTTTCCCC
CCCCCCCCCCCGGACAACGGATCTCACCTCCCGGACAAGCATCAGTTGAC
CCTACGGACATATTCAAAACCCCCCCTAAACAGAAAACAAACTTTCCCGT
TTTTTCCCCCCCCCCCCCCCGGACATGTTTAATGGACTATACGATTTTAA
GAAAAAACAACGTTTTTAATGGACTAATAATAACTCACTATCTCCATTGT
TGCCATAGATACAAGGATGATTGGTGGTGGACAAGAACACCATCAGTTTT
AGCCTGTAAGACTACTGCTTTCTCCATGTATCAGGCTGTTACCTGGTTTG
GTTCAGGAGCTATCTCCAAACAAGATGAACATTACTGCCACGATAGCTGT
ATCTTACCTTATGGTAGCCCAACTATCGCCCTTTATCCTTAGATTAATAA
CTATCTAATTTTGATTTTTAATGGTGATTCATGATATGCAACACTGGAGA
GTCTTCTGAGAATTTTCAAAAAGTTCCACCCAATACGTCACTTTTTCTAT
TGTTTAAATGACGTATTGGGTTGAACTTTTTGAAAATTCTTGGAAGACTC
TCCAGTGTTGCATATCATGAATACACCTTTAAAACGTTAGGGAGACTGGG
TTTGAAACTACCCTGAAAGAATGACGTCAGAATGTATGAAGTCGTTGCAG
CTTTGACTTTCTCATAGACAAAGCATTTTGGCGTCATTTTCTTATAGATT
CATCACTAGTCTCCTGAAAAGCCGTTTTAAAGGTTAATAAGTGCATTTAA
GCAAATTTTACCTACATGAAATGCAATTATATGTTTAATTAAAAGAGAAT
ACTATAAAATATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015280XLOC_015280Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027180-exon-sc0000608-1575043694:151505..151931TCONS_00027180-exon-sc0000608-1575043694:151505..151931Clytia hemisphaericaexon
TCONS_00027180-exon-sc0000608-1575043694:150679..150708TCONS_00027180-exon-sc0000608-1575043694:150679..150708Clytia hemisphaericaexon
TCONS_00027180-exon-sc0000608-1575043694:149275..149384TCONS_00027180-exon-sc0000608-1575043694:149275..149384Clytia hemisphaericaexon
TCONS_00027180-exon-sc0000608-1575043694:148474..148679TCONS_00027180-exon-sc0000608-1575043694:148474..148679Clytia hemisphaericaexon
TCONS_00027180-exon-sc0000608-1575043694:148034..148152TCONS_00027180-exon-sc0000608-1575043694:148034..148152Clytia hemisphaericaexon
TCONS_00027180-exon-sc0000608-1575043694:147349..147425TCONS_00027180-exon-sc0000608-1575043694:147349..147425Clytia hemisphaericaexon
TCONS_00027180-exon-sc0000608-1575043694:145667..146273TCONS_00027180-exon-sc0000608-1575043694:145667..146273Clytia hemisphaericaexon
TCONS_00027180-exon-sc0000608-1510915933:151505..151931TCONS_00027180-exon-sc0000608-1510915933:151505..151931Clytia hemisphaericaexon
TCONS_00027180-exon-sc0000608-1510915933:150679..150708TCONS_00027180-exon-sc0000608-1510915933:150679..150708Clytia hemisphaericaexon
TCONS_00027180-exon-sc0000608-1510915933:149275..149384TCONS_00027180-exon-sc0000608-1510915933:149275..149384Clytia hemisphaericaexon
TCONS_00027180-exon-sc0000608-1510915933:148474..148679TCONS_00027180-exon-sc0000608-1510915933:148474..148679Clytia hemisphaericaexon
TCONS_00027180-exon-sc0000608-1510915933:148034..148152TCONS_00027180-exon-sc0000608-1510915933:148034..148152Clytia hemisphaericaexon
TCONS_00027180-exon-sc0000608-1510915933:147349..147425TCONS_00027180-exon-sc0000608-1510915933:147349..147425Clytia hemisphaericaexon
TCONS_00027180-exon-sc0000608-1510915933:145667..146273TCONS_00027180-exon-sc0000608-1510915933:145667..146273Clytia hemisphaericaexon
TCONS_00027180-exon-sc0000608-1491911889:151505..151931TCONS_00027180-exon-sc0000608-1491911889:151505..151931Clytia hemisphaericaexon
TCONS_00027180-exon-sc0000608-1491911889:150679..150708TCONS_00027180-exon-sc0000608-1491911889:150679..150708Clytia hemisphaericaexon
TCONS_00027180-exon-sc0000608-1491911889:149275..149384TCONS_00027180-exon-sc0000608-1491911889:149275..149384Clytia hemisphaericaexon
TCONS_00027180-exon-sc0000608-1491911889:148474..148679TCONS_00027180-exon-sc0000608-1491911889:148474..148679Clytia hemisphaericaexon
TCONS_00027180-exon-sc0000608-1491911889:148034..148152TCONS_00027180-exon-sc0000608-1491911889:148034..148152Clytia hemisphaericaexon
TCONS_00027180-exon-sc0000608-1491911889:147349..147425TCONS_00027180-exon-sc0000608-1491911889:147349..147425Clytia hemisphaericaexon
TCONS_00027180-exon-sc0000608-1491911889:145667..146273TCONS_00027180-exon-sc0000608-1491911889:145667..146273Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000608supercontigsc0000608:145667..151931 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	46.8319	50.3924	383.188	131.905	227.12	229.114	15.1482	10.8944	112.696	115.815	1.79568	0.887825	19.51	31.0252	0	0	2.43988	5.87234	0.704418	0.881243	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027180 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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