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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027168 ID=TCONS_00027168|Name=TCONS_00027168|organism=Clytia hemisphaerica|type=transcript|length=2114bp
ACAACATCCACAATACAAAAGACTTCTCtaacaacaaacaaaaaactaat
tacaacaactacaacaactgCATCACAAAAGACTAGACCATCAACAGACt
caaaaacaaacccaaagacacAGAAAACAACTCCAAAAACACataaaaca
tcaacaaaaacaacatcaaaaaccTCAACATCTCTCCCCAAAAGTTCaac
aaaaactaaaacaaaCTCAAACACATCAAACCATACCAATCACACAACGA
TTACAACTACTTTTACAACCACTACAACACCCATTCAAACCATAGAGACA
ACAGTACGTGAAACATCTCTTGCCAACGCTGGCGCAAGTAACGATGAACT
TGTGTTGCAAGTTGCAGTACCGTTAGCCATTATGTTGTGTGTCACTCTTG
GTGTTATCGTCTTATTACTAAAATGGCGAAATAATGAGAAAAAGTATATC
CCACCTTCAAGTACATCAAAAACAGAAACTGGGAGTACGGTGGGAGGAAA
CTTTTACGAATATGCATCAACTAAAGAACTTCAACCTTCATCAAATTATC
ACTCGAACGGTCATAGCGAGCTGAAGCACGTGGCGAGTGATAAAAAACCT
GTTTTGCCAGAGcgGAACTCGCCAACCCAGGACACATACACCAGTCTTGA
GCTGTCAGCAACTCCAATAAACCTCTACCACCCTCTCTCATTGGAGTCTC
CATCCGAGGAGAAAGCACCCTCTAACCAGCCACCACCGGCAATCAGGGAC
CCTCTCTATTTCGAAACAGAACCTATATATTCAGAGACACTTACACCTCA
AATTAAAAGAAGGCAGGAACCTCTTTATCATGAGACTGTACCCGACCCTC
CACCAGGAGGGAACTTGACACCGCCCCTCCAGAATGAGACACCACCTCCA
ATACCTACTAGTAGGCGACCATCAGCTATCTTCTATCCACCTGGTACTGT
ATTTATCAACGAAGGTATGAAAGCTGATTCGAATGTTTGAAGAATGATGG
aaatgaataatttgaaaatgaataGAGAAGATTTTGGAGCTACTCATTGC
ACGAGCATGTCACATCGAGAAtttcttcaataaaaactaTGCATTTCACT
CGAAGAACTAATTAACTTTGTATGGTCTGACGAAGTTTTAACTTATTTCA
ACCTCTCAGCACCTAAAAAGCATCATATCGAAAAACTCGATGTATCCGAT
AGCCGACAGCAACTGCTACTTATGGAACATATTCCGAATGTCTTCGAGGT
CAAACGTCATAAAGATACTTATGCTTCCTTTGAGAAAATCACAAAGTTTG
AAGTAGTGCTCAATGTTATTTTGAAGCAATTCAAGTTCGTAAATTTTTAC
AACATTCGCTGCGCTAGTCCCTACCCCCAATCACAAATCGCAATAATCGC
ATTTCCTTATCACAAATCAGATAAGTTATAGAACTAAGTTAAATTAATGA
TTACAATGATGAAATATATCcattaaataaaattgaagtaaGTAAGATAG
AAAATAGACTTTAATATTACTGGAAATTTTTTACCGTAGACGGGACCTAA
ATATTCAAAGTAGCCCTGCCGATATTTTAGTCTTTTCTTTAACCATCTCG
GGAAgtataacctgataacagctattaataattttcttacacGCACGGTA
atcctctgaaggcgcttgaaatttaaccatctgaggaaaatagtcctccc
gggAAATTCTACAACAAGTATATTGTTGTTcaccagaaagtcaaaaacta
aaattttcctGATATAGCGCCTTATTTTCAAACGCAATCACgtaactttg
ttgtcattcccagtcctttgaAATATCAATTCTGGTCATTGGGTCTATTC
TGAGCTTGACGACATGACGAAATTGACGAGCGCGGTCTTTCCGAAATCGA
ggttgcatattcgtcagattgttttgttttcacccatacctttagagctt
cagcgtggtgggcagaaaataATCACAATATGATCTCAGGTTAAGGAAGT
ACAACACGTGAAGGGTAGTTTATCAAACACTATTTATTATGGAAAATAGT
AGTTTATCGTATTATAGGATTCACTACAGTTGatacgctctctaattcga
cgttctagtTTTCG Run BLAST on NCBI protein sequence of TCONS_00027168-protein >TCONS_00027168-protein ID=TCONS_00027168-protein|Name=TCONS_00027168-protein|organism=Clytia hemisphaerica|type=polypeptide|length=329bp
TTSTIQKTSLTTNKKLITTTTTTASQKTRPSTDSKTNPKTQKTTPKTHKT
STKTTSKTSTSLPKSSTKTKTNSNTSNHTNHTTITTTFTTTTTPIQTIET
TVRETSLANAGASNDELVLQVAVPLAIMLCVTLGVIVLLLKWRNNEKKYI
PPSSTSKTETGSTVGGNFYEYASTKELQPSSNYHSNGHSELKHVASDKKP
VLPERNSPTQDTYTSLELSATPINLYHPLSLESPSEEKAPSNQPPPAIRD
PLYFETEPIYSETLTPQIKRRQEPLYHETVPDPPPGGNLTPPLQNETPPP
IPTSRRPSAIFYPPGTVFINEGMKADSNV Run BLAST on NCBI transcript from alignment at sc0000608:36528..39924- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027168 ID=TCONS_00027168|Name=TCONS_00027168|organism=Clytia hemisphaerica|type=transcript|length=3397bp|location=Sequence derived from alignment at sc0000608:36528..39924- (Clytia hemisphaerica)
ACAACATCCACAATACAAAAGACTTCTCTAACAACAAACAAAAAACTAAT
TACAACAACTACAACAACTGCATCACAAAAGACTAGACCATCAACAGACT
CAAAAACAAACCCAAAGACACAGAAAACAACTCCAAAAACACATAAAACA
TCAACAAAAACAACATCAAAAACCTCAACATCTCTCCCCAAAAGTTCAAC
AAAAACTAAAACAAACTCAAACACATCAAACCATACCAATCACACAACGA
TTACAACTACTTTTACAACCACTACAACACCCATTCAAACCATAGAGACA
ACAGTACGTGAAACATCTCTTGCCAACGCTGGCGCAAGTAACGATGAACT
TGTGTTGCAAGTTGCAGTACCGTTAGCCATTATGTTGTGTGTCACTCTTG
GTGTTATCGTCTTATTACTAAAGTATGTTTCTTTTCAGTTTAACGTTAAC
AAAACATCTCATTTTAAAANGTGTCACTCTTGGTGTTATCGTCTTATTAC
TAAAGTATGTTTCTTTTCAGTTTAACGTTAACAAAACATTTCATTTTAAA
ACTTTAAAGCAACCGTTATTATAACAATAGCGTTCAGTGTGAGGTCGTTG
TTGTTATTTTCTGCCTGCGTAGTTTGATTATTCGCCCGATAGTGTCATTT
GGGAAAATGGCACTAGAGGGCTAATAATCAAACTGCAAGGGCAGAATTAA
TGACAACAACGAACGGGTATGACAATTTGAGTCACAAAACCTTTCAATAC
TGCCCGCCGATTGAACCTTTAATGGCTTACTTAATGACCGCTGGATGGAT
AATATTTAGCAATAACTACAACGTAAATTTAACGTTAAAATAACATTTTT
GTGCCAGCTAGGTGAAGAGTCTTTCCATTTATAAAACTATGCTAAACTAC
GATTATTTCAATCGTTCAAAGGCTTATAAAGTGATATTTTGCTATGAGGT
TTTTCCATTTCTTCTTTAAAAGAGTAATTTTCCTATAGGACCTACAATCA
TCCACTAAATATTTGAGACAAAGGGGAGCTCCCGGTGTAATTTTGAACAC
CACAATTGATTTTTAAGCGCCTTAAACTACAGTTGGAAAGTAGAGTTTTA
ACCCTGAGTTTTAACATGAAACTTAAGACTTACGACCTTAGGCTTGGAAT
ATAGCCTAGAAGCCACCAAACCCCTCTAAAATCGAAATATTCAATGGAAG
AAAATGGAAGTGCTAAAATAGCAATTGTCGCCCGAACTTTAAATTCTGAA
AAACGTTAAAATACACTAAAATCTCAATATATTTTGAGGGTGATTGCAGA
TTTTCCAGGTGGGTCTACATATAATGAGATGTAGATTAATCGTTTTAAAC
GTCTCTTTTCCTTCTTTCAGATGGCGAAATAATGAGAAAAAGTATATCCC
ACCTTCAAGTACATCAAAAACAGAAACTGGGAGTACGGTGGGAGGAAACT
TTTACGAATATGCATCAACTAAAGAACTTCAACCTTCATCAAATTATCAC
TCGAACGGTCATAGCGAGCTGAAGCACGTGGCGAGTGATAAAAAACCTGT
TTTGCCAGAGGTAAAGTATTCGTTATGCTTTTGATGAGCACATCATAGTA
TCGATATATAATAATCAAGGACATTTAGGCATTCTTTCAATTGTTTTCAC
GAGGCCTCTGACCAACCAGCTCGGATATATATTACCCAGCTGACACACAA
CGTTGTTTCAACGTTCATCTAACATTATATGGACGTTGTGAGCATTAGAA
AAACGTCAAAACAACGTTGTGTGCCAGCTGAGTTAAGATTTCGGTTCATG
TATGATATCTTCCCAAATTGAGTAAATTCTTCAAAAATAAATTTAATTTT
TTTTTGAGTTGATTTTTATGGAAAATTTATATTTTCTCTTTTTAGCGGAA
CTCGCCAACCCAGGACACATACACCAGTCTTGAGCTGTCAGCAACTCCAA
TAAACCTCTACCACCCTCTCTCATTGGAGTCTCCATCCGAGGAGAAAGCA
CCCTCTAACCAGCCACCACCGGCAATCAGGGACCCTCTCTATTTCGAAAC
AGAACCTATATATTCAGAGACACTTACACCTCAAATTAAAAGAAGGCAGG
AACCTCTTTATCATGAGACTGTACCCGACCCTCCACCAGGAGGGAACTTG
ACACCGCCCCTCCAGAATGAGACACCACCTCCAATACCTACTAGTAGGCG
ACCATCAGCTATCTTCTATCCACCTGGTACTGTATTTATCAACGAAGGTA
TGAAAGCTGATTCGAATGTTTGAAGAATGATGGAAATGAATAATTTGAAA
ATGAATAGAGAAGATTTTGGAGCTACTCATTGCACGAGCATGTCACATCG
AGAATTTCTTCAATAAAAACTATGCATTTCACTCGAAGAACTAATTAACT
TTGTATGGTCTGACGAAGTTTTAACTTATTTCAACCTCTCAGCACCTAAA
AAGCATCATATCGAAAAACTCGATGTATCCGATAGCCGACAGCAACTGCT
ACTTATGGAACATATTCCGAATGTCTTCGAGGTCAAACGTCATAAAGATA
CTTATGCTTCCTTTGAGAAAATCACAAAGTTTGAAGTAGTGCTCAATGTT
ATTTTGAAGCAATTCAAGTTCGTAAATTTTTACAACATTCGCTGCGCTAG
TCCCTACCCCCAATCACAAATCGCAATAATCGCATTTCCTTATCACAAAT
CAGATAAGTTATAGAACTAAGTTAAATTAATGATTACAATGATGAAATAT
ATCCATTAAATAAAATTGAAGTAAGTAAGATAGAAAATAGACTTTAATAT
TACTGGAAATTTTTTACCGTAGACGGGACCTAAATATTCAAAGTAGCCCT
GCCGATATTTTAGTCTTTTCTTTAACCATCTCGGGAAGTATAACCTGATA
ACAGCTATTAATAATTTTCTTACACGCACGGTAATCCTCTGAAGGCGCTT
GAAATTTAACCATCTGAGGAAAATAGTCCTCCCGGGAAATTCTACAACAA
GTATATTGTTGTTCACCAGAAAGTCAAAAACTAAAATTTTCCTGATATAG
CGCCTTATTTTCAAACGCAATCACGTAACTTTGTTGTCATTCCCAGTCCT
TTGAAATATCAATTCTGGTCATTGGGTCTATTCTGAGCTTGACGACATGA
CGAAATTGACGAGCGCGGTCTTTCCGAAATCGAGGTTGCATATTCGTCAG
ATTGTTTTGTTTTCACCCATACCTTTAGAGCTTCAGCGTGGTGGGCAGAA
AATAATCACAATATGATCTCAGGTTAAGGAAGTACAACACGTGAAGGGTA
GTTTATCAAACACTATTTATTATGGAAAATAGTAGTTTATCGTATTATAG
GATTCACTACAGTTGATACGCTCTCTAATTCGACGTTCTAGTTTTCG Coding sequence (CDS) from alignment at sc0000608:36528..39924- >TCONS_00027168 ID=TCONS_00027168|Name=TCONS_00027168|organism=Clytia hemisphaerica|type=CDS|length=2970bp|location=Sequence derived from alignment at sc0000608:36528..39924- (Clytia hemisphaerica)
CGGAACTCGCCAACCCAGGACACATACACCAGTCTTGAGCTGTCAGCAAC
TCCAATAAACCTCTACCACCCTCTCTCATTGGAGTCTCCATCCGAGGAGA
AAGCACCCTCTAACCAGCCACCACCGGCAATCAGGGACCCTCTCTATTTC
GAAACAGAACCTATATATTCAGAGACACTTACACCTCAAATTAAAAGAAG
GCAGGAACCTCTTTATCATGAGACTGTACCCGACCCTCCACCAGGAGGGA
ACTTGACACCGCCCCTCCAGAATGAGACACCACCTCCAATACCTACTAGT
AGGCGACCATCAGCTATCTTCTATCCACCTGGTACTGTATTTATCAACGA
AGGTATGAAAGCTGATTCGAATGTTTGAATGGCGAAATAATGAGAAAAAG
TATATCCCACCTTCAAGTACATCAAAAACAGAAACTGGGAGTACGGTGGG
AGGAAACTTTTACGAATATGCATCAACTAAAGAACTTCAACCTTCATCAA
ATTATCACTCGAACGGTCATAGCGAGCTGAAGCACGTGGCGAGTGATAAA
AAACCTGTTTTGCCAGAGACAACATCCACAATACAAAAGACTTCTCTAAC
AACAAACAAAAAACTAATTACAACAACTACAACAACTGCATCACAAAAGA
CTAGACCATCAACAGACTCAAAAACAAACCCAAAGACACAGAAAACAACT
CCAAAAACACATAAAACATCAACAAAAACAACATCAAAAACCTCAACATC
TCTCCCCAAAAGTTCAACAAAAACTAAAACAAACTCAAACACATCAAACC
ATACCAATCACACAACGATTACAACTACTTTTACAACCACTACAACACCC
ATTCAAACCATAGAGACAACAGTACGTGAAACATCTCTTGCCAACGCTGG
CGCAAGTAACGATGAACTTGTGTTGCAAGTTGCAGTACCGTTAGCCATTA
TGTTGTGTGTCACTCTTGGTGTTATCGTCTTATTACTAAACGGAACTCGC
CAACCCAGGACACATACACCAGTCTTGAGCTGTCAGCAACTCCAATAAAC
CTCTACCACCCTCTCTCATTGGAGTCTCCATCCGAGGAGAAAGCACCCTC
TAACCAGCCACCACCGGCAATCAGGGACCCTCTCTATTTCGAAACAGAAC
CTATATATTCAGAGACACTTACACCTCAAATTAAAAGAAGGCAGGAACCT
CTTTATCATGAGACTGTACCCGACCCTCCACCAGGAGGGAACTTGACACC
GCCCCTCCAGAATGAGACACCACCTCCAATACCTACTAGTAGGCGACCAT
CAGCTATCTTCTATCCACCTGGTACTGTATTTATCAACGAAGGTATGAAA
GCTGATTCGAATGTTTGAATGGCGAAATAATGAGAAAAAGTATATCCCAC
CTTCAAGTACATCAAAAACAGAAACTGGGAGTACGGTGGGAGGAAACTTT
TACGAATATGCATCAACTAAAGAACTTCAACCTTCATCAAATTATCACTC
GAACGGTCATAGCGAGCTGAAGCACGTGGCGAGTGATAAAAAACCTGTTT
TGCCAGAGACAACATCCACAATACAAAAGACTTCTCTAACAACAAACAAA
AAACTAATTACAACAACTACAACAACTGCATCACAAAAGACTAGACCATC
AACAGACTCAAAAACAAACCCAAAGACACAGAAAACAACTCCAAAAACAC
ATAAAACATCAACAAAAACAACATCAAAAACCTCAACATCTCTCCCCAAA
AGTTCAACAAAAACTAAAACAAACTCAAACACATCAAACCATACCAATCA
CACAACGATTACAACTACTTTTACAACCACTACAACACCCATTCAAACCA
TAGAGACAACAGTACGTGAAACATCTCTTGCCAACGCTGGCGCAAGTAAC
GATGAACTTGTGTTGCAAGTTGCAGTACCGTTAGCCATTATGTTGTGTGT
CACTCTTGGTGTTATCGTCTTATTACTAAACGGAACTCGCCAACCCAGGA
CACATACACCAGTCTTGAGCTGTCAGCAACTCCAATAAACCTCTACCACC
CTCTCTCATTGGAGTCTCCATCCGAGGAGAAAGCACCCTCTAACCAGCCA
CCACCGGCAATCAGGGACCCTCTCTATTTCGAAACAGAACCTATATATTC
AGAGACACTTACACCTCAAATTAAAAGAAGGCAGGAACCTCTTTATCATG
AGACTGTACCCGACCCTCCACCAGGAGGGAACTTGACACCGCCCCTCCAG
AATGAGACACCACCTCCAATACCTACTAGTAGGCGACCATCAGCTATCTT
CTATCCACCTGGTACTGTATTTATCAACGAAGGTATGAAAGCTGATTCGA
ATGTTTGAATGGCGAAATAATGAGAAAAAGTATATCCCACCTTCAAGTAC
ATCAAAAACAGAAACTGGGAGTACGGTGGGAGGAAACTTTTACGAATATG
CATCAACTAAAGAACTTCAACCTTCATCAAATTATCACTCGAACGGTCAT
AGCGAGCTGAAGCACGTGGCGAGTGATAAAAAACCTGTTTTGCCAGAGAC
AACATCCACAATACAAAAGACTTCTCTAACAACAAACAAAAAACTAATTA
CAACAACTACAACAACTGCATCACAAAAGACTAGACCATCAACAGACTCA
AAAACAAACCCAAAGACACAGAAAACAACTCCAAAAACACATAAAACATC
AACAAAAACAACATCAAAAACCTCAACATCTCTCCCCAAAAGTTCAACAA
AAACTAAAACAAACTCAAACACATCAAACCATACCAATCACACAACGATT
ACAACTACTTTTACAACCACTACAACACCCATTCAAACCATAGAGACAAC
AGTACGTGAAACATCTCTTGCCAACGCTGGCGCAAGTAACGATGAACTTG
TGTTGCAAGTTGCAGTACCGTTAGCCATTATGTTGTGTGTCACTCTTGGT
GTTATCGTCTTATTACTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027168-exon-sc0000608-1575043694:39503..39924 | TCONS_00027168-exon-sc0000608-1575043694:39503..39924 | Clytia hemisphaerica | exon |
| TCONS_00027168-exon-sc0000608-1575043694:38365..38554 | TCONS_00027168-exon-sc0000608-1575043694:38365..38554 | Clytia hemisphaerica | exon |
| TCONS_00027168-exon-sc0000608-1575043694:36528..38029 | TCONS_00027168-exon-sc0000608-1575043694:36528..38029 | Clytia hemisphaerica | exon |
| TCONS_00027168-exon-sc0000608-1510915933:39503..39924 | TCONS_00027168-exon-sc0000608-1510915933:39503..39924 | Clytia hemisphaerica | exon |
| TCONS_00027168-exon-sc0000608-1510915933:38365..38554 | TCONS_00027168-exon-sc0000608-1510915933:38365..38554 | Clytia hemisphaerica | exon |
| TCONS_00027168-exon-sc0000608-1510915933:36528..38029 | TCONS_00027168-exon-sc0000608-1510915933:36528..38029 | Clytia hemisphaerica | exon |
| TCONS_00027168-exon-sc0000608-1491911889:39503..39924 | TCONS_00027168-exon-sc0000608-1491911889:39503..39924 | Clytia hemisphaerica | exon |
| TCONS_00027168-exon-sc0000608-1491911889:38365..38554 | TCONS_00027168-exon-sc0000608-1491911889:38365..38554 | Clytia hemisphaerica | exon |
| TCONS_00027168-exon-sc0000608-1491911889:36528..38029 | TCONS_00027168-exon-sc0000608-1491911889:36528..38029 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000608 | supercontig | sc0000608:36528..39924 - |
Blast
The following BLAST results are available for this feature:
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