TCONS_00027152 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027152
Unique NameTCONS_00027152
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length307

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027152 ID=TCONS_00027152|Name=TCONS_00027152|organism=Clytia hemisphaerica|type=transcript|length=307bp
CATCTTTCCGTCATATCATAAAACCAAAAAACAACACTTGGTTCAAATAA
TACCCAATTTGGCAATGGACAAAAAATTGTTCGACATATGGATCGTAAAA
CCTAGAGTAAACTTTGAAGCTCTTGCTACTTCTTTTGGCTCTTCGTTCAC
CATGAAAGTAAGCGATAATGACGAGGTCATTGTCCTTAAAAACAGGGTGG
CGGAGGCTATTGGACAGGCAAAGAATGAGGAGAATTATTGTTTTATTGAT
TTGTGGAGCTCCAAAGATGTCCGACAGTTGGAAGACGGCCACACTTTGGC
AGAGTAT
Run BLAST on NCBI

protein sequence of TCONS_00027152-protein

>TCONS_00027152-protein ID=TCONS_00027152-protein|Name=TCONS_00027152-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
IFPSYHKTKKQHLVQIIPNLAMDKKLFDIWIVKPRVNFEALATSFGSSFT
MKVSDNDEVIVLKNRVAEAIGQAKNEENYCFIDLWSSKDVRQLEDGHTLA
EY
Run BLAST on NCBI

transcript from alignment at sc0000607:149053..149359

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027152 ID=TCONS_00027152|Name=TCONS_00027152|organism=Clytia hemisphaerica|type=transcript|length=307bp|location=Sequence derived from alignment at sc0000607:149053..149359 (Clytia hemisphaerica)
ATACTCTGCCAAAGTGTGGCCGTCTTCCAACTGTCGGACATCTTTGGAGC
TCCACAAATCAATAAAACAATAATTCTCCTCATTCTTTGCCTGTCCAATA
GCCTCCGCCACCCTGTTTTTAAGGACAATGACCTCGTCATTATCGCTTAC
TTTCATGGTGAACGAAGAGCCAAAAGAAGTAGCAAGAGCTTCAAAGTTTA
CTCTAGGTTTTACGATCCATATGTCGAACAATTTTTTGTCCATTGCCAAA
TTGGGTATTATTTGAACCAAGTGTTGTTTTTTGGTTTTATGATATGACGG
AAAGATG

Coding sequence (CDS) from alignment at sc0000607:149053..149359

>TCONS_00027152 ID=TCONS_00027152|Name=TCONS_00027152|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at sc0000607:149053..149359 (Clytia hemisphaerica)
ATACTCTGCCAAAGTGTGGCCGTCTTCCAACTGTCGGACATCTTTGGAGC
TCCACAAATCAATAAAACAATAATTCTCCTCATTCTTTGCCTGTCCAATA
GCCTCCGCCACCCTGTTTTTAAGGACAATGACCTCGTCATTATCGCTTAC
TTTCATGGTGAACGAAGAGCCAAAAGAAGTAGCAAGAGCTTCAAAGTTTA
CTCTAGGTTTTACGATCCATATGTCGAACAATTTTTTGTCCATTGCCAAA
TTGGGTATTATTTGAACCAAGTGTTGTTTTTTGGTTTTATGATATGACGG
AAAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015262XLOC_015262Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027152-exon-sc0000607-1491911889:149053..149359TCONS_00027152-exon-sc0000607-1491911889:149053..149359Clytia hemisphaericaexon
TCONS_00027152-exon-sc0000607-1510915933:149053..149359TCONS_00027152-exon-sc0000607-1510915933:149053..149359Clytia hemisphaericaexon
TCONS_00027152-exon-sc0000607-1575043694:149053..149359TCONS_00027152-exon-sc0000607-1575043694:149053..149359Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027152-proteinTCONS_00027152-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000607supercontigsc0000607:149053..149359 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.01225	3.65634	0.152482	0.0764222	0	0.671751	0	1.40082	0.689314	0	0	0	0	0	1.48602	0.507495	0.593308	0.00117386	0.522465	2.00661	2.15761	1.84592	2.14591	4.18048	4.24	7.07582	3.50284	2.21902	0	0.924354
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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