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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027140 ID=TCONS_00027140|Name=TCONS_00027140|organism=Clytia hemisphaerica|type=transcript|length=1550bp
aaaaaaaacaccaaaaatgatACTCAATTTTACTATTTAAGAATCCAAGA
AAAGTGATATCCACTGACCAAAATATAATGGCTCTACACTGCAAGAAACC
ATTTTTACCATCAAGCATACAAAAACTGGTCGATAAAGATGAAATATTGG
ACACTTGTCAAGATACTTTTCACTACGGATCTAATAACGGATTCGATAGC
TCAGGATgctacttttcaatatatttccaACGAGGTCTTGGACTTAGCAG
AGATTACGATGGATGTAAAGTGATGTTGTATCGATTTGAAAACGATGAAG
AAAAGATAGGTACTTGTTATATAAATCTGTACCGTTCACCGAAAGTCCTC
CAAATTTCAACCCGTTTGATCCACCCGAAGATGCAGAAGAAAGTGATTAC
GTCACTCAAAAACTTGAATACGACGTTGTTACAATGCGTTGGTTCAACGT
TGAAAAGACGTCCAAAGATGACGGGGACCACCAACTCACTGTTTACAGTA
GCTGTTTGAGACCTCTGTACGAAAACGGTGGCAAAAAGACGATCAATGTT
GAGAAAGCTGATGATGGCAATGATGTACTTGTGCTTTCGTATCCTAATAT
CCAAAAGTTTCTGGGAGCTGATATTAATAATatgGTTTGTGGCAATTTTC
TGGTACTGATGGTAACTCCTGATGAAGCAAATTTCATTGTTGATCTGATC
AAGTTCGATGACAAAGAAATCTTCCATTTCAAACGTCTAACAGCTCGAGG
AGATTACACTGTATACAACCCTTTGTCTTTCGGCTTACCAAGCAAAGTAT
ATCTGGACATGGAATGGCAAAGGTTTTACGTAATGAGTAATTATGAGTTA
TATTGCTACGATTTTAACGGTGAAAAGATCTTCGACGGTAGCATTCGCAA
TTACGAACGTTAATGCGTATGATTTGCAAACGGGTGGAGAAGCagtttta
tacaaatttgaagAACCATTTTATGGAGATTGTTATTTGAATTGGAATAT
GAGAGAATTGGCATTAGTTACAGAATTGGATGATGAAGAGAGAATCAAAC
GTCTTTGTGTTGAAAGAATTCCCTTCTTTATGAACTCGGAGTCGAATTGT
TGTTCTCTCAAAGAACAAGCACGTTTTGTTTGCTTGAATAATTTCCATGA
AGGTTATCTGTGTCAAAAACTTCCGAAAGATCTTTTACGATTTCTTGACA
TATTGTAGTAATTTGTGGTTATCCCTATAGCTTTTCATACAGGATACAGG
AGGTTGGAATAAATCCTACCCGGGCACCATGCCACGATAGAACAGAAGAC
TATGGAAAATTAAAAAGCATCTTTCGAAACGTTCACtcattgattttaat
tttgcatCATCTGAGGTAATTCACTCCAAACATTTTTGACGACGTCATGC
ATCTTCACACTTACCATTTTTTGTACATGTAATTACTTTTTTAGAGCtta
catttttataagataaTGATAATGATTTTTTTAGCCCTGGGTGACTCAAA
ATATATTGTCTACATACGTTCTATGTGCTAAAAATACATTCTGTCCTAAG Run BLAST on NCBI transcript from alignment at sc0000607:140303..146154- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027140 ID=TCONS_00027140|Name=TCONS_00027140|organism=Clytia hemisphaerica|type=transcript|length=5852bp|location=Sequence derived from alignment at sc0000607:140303..146154- (Clytia hemisphaerica)
AAAAAAAACACCAAAAATGATACTCAATTTTACTATTTAAGAATCCAAGA
AAAGTGATATCCACTGACCAAAATATAATGGCTCTACACTGCAAGAAACC
ATTTTTACCATCAAGCATACAAAAACTGGTCGATAAAGATGAAATATTGG
ACACTTGTCAAGATACTTTTCACTACGGATCTAATAACGGATTCGATAGC
TCAGGATGCTACTTTTCAATATATTTCCAACGAGGTCTTGGACTTAGCAG
AGATTACGATGGATGTAAAGTGATGTTGTATCGATTTGAAAACGATGAAG
AAAAGATAGGTGTAAGTGTAACGATTTCTTGGTTATTGCAGTGGAGTTTC
CACAACTAGAACATGCACGGGGGACATTAATTTGTTCGTGTTAAGGAAAC
TTCGACTTATGGAGTATAATGTGAGACCAGAAAACTTGTTCGAGTTAAGG
AGACCTTTGAGTTATAGAGGTTCGAGATAAAGAAACTCTGTTGTATCTTC
AAAATTATTTGTTCTCATTTTTTGTTTCAATAAGTTAGGAAAAAGAGGGA
AACTTAGGTAAAACGAGGATAAATTAAACGTGAACAACACGTTTGGTTGA
AAAAGATGAATTAGGATAAAACATTGATGACGTAGGTGAAAAGAAGGTAA
GTTGGGTAAAAAGAGAATTCTAGCTTGTTATAACTTCTTTTAGACTTGTT
ATATAAATCTGTACCGTTCACCGAAAGTCCTCCAAATTTCAACCCGTTTG
ATCCACCCGAAGATGCAGAAGAAAGTGATTACGTCACTCAAAAACTTGAA
TACGACGTTGTTACAATGCGTTGGTTCAACGTTGAAAAGACGTCCAAAGA
TGACGGGGACCACCAACTCACTGTTTACAGTAGCTGTTTGAGACCTCTGT
ACGAAAACGGTGGCAAAAAGACGATCAATGTTGAGAAAGCTGATGATGGC
AATGATGTACTTGTGCTTTCGTATCCTAATATCCAAAAGTTTCTGGGAGC
TGATATTAATAATGTAGGTAATGATTTCAATGATAAGGTTATATAAACTT
CACTTTTCTGTTTTAAAGTGTTCACTTTATACATTTTTCGTCCTTTGATT
TGGAACGAATTGAGTCTTCTTCATTCATTAGTATGGCAAAAATGATAATA
TTTTGAAGTAGCTTATTCTTCCTGTTCGTTCGTTCGTTCGTTCGTTCGTT
CGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCA
AACATATCAGCGTGAAATTGCTTCACTTTTTAACGCCACTACACGGATTT
CGAATTAAGATTTTTTTGTAACTACAACTTTCTGCATATTTCCATATTTT
TTTTTACAGATGGTTTGTGGCAATTTTCTGGTACTGATGGTAACTCCTGA
TGAAGCAAATTTCATTGTTGATCTGATCAAGTTCGATGACAAAGAAATCT
TCCATTTCAAACGTCTAACAGCTCGAGGAGATTACACTGTATACAACCCT
TTGTCTTTCGGCTTACCAAGCAAAGTATATCTGGACATGGAATGGCAAAG
GTTTTACGTAATGAGTAATTATGAGTTATATTGCTACGATTTTAACGGTG
AAAAGATCTTCGACGGTAGCATTCGCAATTACGAAGTAAGAATGATTTAT
CTTATTTTCTTGTGTTTTAAAGCGATTATATTTTAGGCCAGCAATTGATG
CTTTAAAACGTTTTTTGGCTTTTCGTTAAAAAAACAGTTTGAGAACCATT
TCCACAAGGTTTAAGGGTCCAATGCCCAGATATATCTAATATAAAATACC
CCTACATAGCGCTGTAGTCAAGCCACGGTAGTTGAAGCAAAATAATACAG
CAGTACAGTAGACCACAGTAGTAGACCACAGTTCGGTACCGGTAAATTGT
TCAATCAGAGCAAAACAACTGACGAGACGAGAAACTTGATTGATCAAATT
GTCCGCATCAAACTGGTCTTCTCATAAAGATAGTTATTACTTTGCTTCGG
TGAGGGAAAGAGTAGCTTCATCTATTGTTTTATAAAATATATGTGGTCGA
ATATCGCCAAAACAGCACTAATCCTCATAACGGCTTACCGTCTTAGACGT
TAAATACACCCAAAATCTTAGAAAAAACAGAAAGTCATTAACCAGAGCGC
GGGGGTCCTGATTACCAATGCTTCCTTTTGACCTTAAAATGGTCAATGAA
GGAGCCAATGACCAAACATGTGACGTCATTTGAAACTTTTTGGAAAGGCG
TGAAAATCGCAGATGTCTTTTATAGAACACTGAACTAGATAGAGCTTCTC
TGTCCCTGGCTGAAGCAATATAATACAACCTCTCAGTAGACCAAAGTTTG
GTACCGGCAATTTTTTCAATAAAGATCATTCTCTCGTCTCATCGTTTCCC
GTCTCGTCAGTTGTTTTGTTCTGATTGAACAAATAGCCGGTACCGAAATG
CGGTCTAACACTGTAGTGTGCTTTACTCTTTCATTATCTTGCTTAAACTG
GTTAACTTGAGAAAAAACAGAGTGGAACTGTTGTATCTGGTGTTTTATCC
GAGATATCAGAATGTCAGTTACTACTGGGGGTGACAATTGTTATAGCAGT
TTAAATTTGATGCCCTTATGGAAGGGAAGAAAGCCACTGATCCAAATTTT
GCATTAGGTTGACAGGTGTTTTTAGGTTAGGTGTTTTATCCGAGATTTCA
GAATGTCAGTTACTACTGGCGGGAATGACAAATGTTATAGCAGTTTACAT
TTGATGCCCTTATGGAAGGGAAGAAAGCCACTGATCCAATTTTTGCATTA
GGATGACAGGTGTTTTTAGCTTAGGTGCTTCATCCAAGATTTCAGAATGT
CAGTTACTACTGGCGGGAATGACAAATGTTATAGCAGTTTAAATTTGATG
CCCTTATGGAAGGGAAGAAAGCCACTGATCCAATTTTTGCATTAGGTTGA
CAGGTGTTTTTAGGTTAGGTGCTTTATCCAAGATTTCAGAATGTCAGTTA
CTACTGGCGGGAATGACAAATGTTATAGCAGTTTAAATTTGATGCCCTTA
TGAAAGGGAAGAAAGCCACTGATCCAATTTTTGCATTAGGTTGACAGGTG
TTTTTAGGTTAGGTGCTTTATCCAAGATTTCAGAATGTCAGTTACTACTG
GCGGGAATGACAAATGTTATAGCAGTTTAAATTTGATGCCCTTATGAAAG
GGAAGAAAGCCACTGATCCAATTTTTGCATTAGGTTGACAGGTGTTTTTA
GGTTAGGTGCTTTATCCAAGATTTCAGAATGTCAGTTACTACTGGCGGGA
ATGACAAATGTTATAGCAGTTTAAATTTGATGCCCTTATGGAAGGGAAGA
AAGCCACTGATCCAATTTTTGCATTAGGTTGACAGGTGTTTTTAGGTTAG
GTGCTTTATCCAAGATTTCAGAATGTCAGTTACTACTGGCGGGAATGACA
AATGTTATAGCAGTTTAAATTTGATGCCCTTATGGAAGGGAAGAAAGCCA
CTGATCCAATTTTTGCATTAGGTTGACAGGTGTTTTTAGGTTAGGTGCTT
TATCCAAGATTTCAGAATGTCAGTTACTACTGGCGGGAATGACAAATGTT
ATAGCAGTTTACATTTGATGCCCTTATGAAAGGGAAGAAAGCCACTGATC
CAATTTTTGCATTAGGTTGACAGGTGTTTTAGGTTATAGGTGTTTTATCC
GAGATTTCAGAATTTCAGTTACTACTGGGGATGACAATTGTTATAGCAGT
TTAAATTTGATGCCCTTATGGAAGGGAAGAAAGCCACTGATCCAATTTTT
GCATTAGGTTGACAGGTGTTTTTAGGTTAGGTGTTTTATCCGAGATTTCA
GAATTTCAGTTACTACTGGGGATGACAATTGTTATAGCACTGGGATCCCC
ACTCCTCCTAAAATTCCTAAAAATCCTACAATAAGTCAAAACTCCTATAA
TCCTCCTAAAACTCAACAAATTCTCCTAAATTCCTAAAATCTGAAAACTT
TATCAAGCACGATGGTAGCTGATTATGTTTGTATATTTGTATAATCAGAC
AAGAAACTAAGATTTTTTTCTCATCAAAGTCAAAACAAGCTGGGAGTAGT
AAGCTACCTGACCTTGTAACAACATGTTTAAAATATATTTTTGCACTGAA
ATATTTGGAACAAAAGCCTATGTTTATTGAAAGAGTGCAGACTTTATTCA
ACAAAGAAGGCTCAAATGTTTAAGAGCAAGGTTTGGTGGTTTGCGCCCTC
ATCTGTGAATTTTTCACTTGAGCACCCCCCTGAACTTAGGGGGGGCTAAA
CCATTTTTGCTTGATTGGGGGCTGTATTTAAAAAAAAAATACTGGGGCTA
GCTTGCTAGGGGGCTGAGTGTTAAGTAGTAGAACTGGGGTCAGAGCTGAT
AGGTTACAAATATTTTAATTTATGCTAAAAATCTATGTTGTGGGGAAGGT
TTTGACCCCTCTTAGAAAAAATTTTTGCCTGCGGTGCAATAAATTTATTA
AGAATTTGCATATAAGATTTCTATGATATTTTGTTTTGTGAAAGTGGAGG
CTAAGTTTTAAGAGTTTTTCTGGGGCCTTTTTCCTTAGTCTCCCCCCTGA
AAAATGCTGGGGGCTGGACCCCTCTGCACACTACTATGACATAGGCTTTG
TTAGAACGAATAATATGATAAGTAAAGTAATTTTATTTCAGTCTTCCTGT
GGGTGATTTTTTTTTCGGCAGAACATCTTTCTAATGGCTGACTTCAGGTC
GATTTTAGAAATTTATTTCTTAAATTTTCCTAAAATGCTCCTAAAAAATT
GAAATTCTTCTAAAACTCTCCTAAAATTTGGCCAAAATCCTCCTAAAATT
TGTCCCAAAATTAAAATAGTCAGGCGTGGGATCCCTGTAAGCAGTTTAAA
TTCGATGCCCTTATGGAAGGGAAGAAACCCACTGATTCAATTTTTGCATT
AGGTTGACAAAATGGTTATTGAGAAGACGATGCAAGTTTCGAACAGAGTC
TTCATCACCGCCATTTCCCCACCCCAATTTCCCATGGATACAATTAGACT
GATCGAGATCACCCGAAACGAAATAAAACTTGGCGATTGCATTAAGCTTT
CAAGCAGCAAGTATAACTTCATGCATAAATATATTTGGGTCCAGAGATAT
CTCGGTAAACAATATTTCTGTTGGCTTGAAGCTCGACCAAATACCAATTG
TTTCTTCAGCGTTAATGCGTATGATTTGCAAACGGGTGGAGAAGCAGTTT
TATACAAATTTGAAGAACCATTTTATGGAGATTGTTATTTGAATTGGAAT
ATGAGAGAATTGGCATTAGTTACAGAATTGGATGATGAAGAGAGAATCAA
ACGTCTTTGTGTTGAAAGAATTCCCTTCTTTATGAACTCGGAGTCGAATT
GTTGTTCTCTCAAAGAACAAGCACGTTTTGTTTGCTTGAATAATTTCCAT
GAAGGTTATCTGTGTCAAAAACTTCCGAAAGATCTTTTACGATTTCTTGA
CATATTGTAGTAATTTGTGGTTATCCCTATAGCTTTTCATACAGGATACA
GGAGGTTGGAATAAATCCTACCCGGGCACCATGCCACGATAGAACAGAAG
ACTATGGAAAATTAAAAAGCATCTTTCGAAACGTTCACTCATTGATTTTA
ATTTTGCATCATCTGAGGTAATTCACTCCAAACATTTTTGACGACGTCAT
GCATCTTCACACTTACCATTTTTTGTACATGTAATTACTTTTTTAGAGCT
TACATTTTTATAAGATAATGATAATGATTTTTTTAGCCCTGGGTGACTCA
AAATATATTGTCTACATACGTTCTATGTGCTAAAAATACATTCTGTCCTA
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027140-exon-sc0000607-1575043694:145844..146154 | TCONS_00027140-exon-sc0000607-1575043694:145844..146154 | Clytia hemisphaerica | exon |
| TCONS_00027140-exon-sc0000607-1575043694:145142..145461 | TCONS_00027140-exon-sc0000607-1575043694:145142..145461 | Clytia hemisphaerica | exon |
| TCONS_00027140-exon-sc0000607-1575043694:144520..144795 | TCONS_00027140-exon-sc0000607-1575043694:144520..144795 | Clytia hemisphaerica | exon |
| TCONS_00027140-exon-sc0000607-1575043694:140303..140945 | TCONS_00027140-exon-sc0000607-1575043694:140303..140945 | Clytia hemisphaerica | exon |
| TCONS_00027140-exon-sc0000607-1510915933:145844..146154 | TCONS_00027140-exon-sc0000607-1510915933:145844..146154 | Clytia hemisphaerica | exon |
| TCONS_00027140-exon-sc0000607-1510915933:145142..145461 | TCONS_00027140-exon-sc0000607-1510915933:145142..145461 | Clytia hemisphaerica | exon |
| TCONS_00027140-exon-sc0000607-1510915933:144520..144795 | TCONS_00027140-exon-sc0000607-1510915933:144520..144795 | Clytia hemisphaerica | exon |
| TCONS_00027140-exon-sc0000607-1510915933:140303..140945 | TCONS_00027140-exon-sc0000607-1510915933:140303..140945 | Clytia hemisphaerica | exon |
| TCONS_00027140-exon-sc0000607-1491911889:145844..146154 | TCONS_00027140-exon-sc0000607-1491911889:145844..146154 | Clytia hemisphaerica | exon |
| TCONS_00027140-exon-sc0000607-1491911889:145142..145461 | TCONS_00027140-exon-sc0000607-1491911889:145142..145461 | Clytia hemisphaerica | exon |
| TCONS_00027140-exon-sc0000607-1491911889:144520..144795 | TCONS_00027140-exon-sc0000607-1491911889:144520..144795 | Clytia hemisphaerica | exon |
| TCONS_00027140-exon-sc0000607-1491911889:140303..140945 | TCONS_00027140-exon-sc0000607-1491911889:140303..140945 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000607 | supercontig | sc0000607:140303..146154 - |
Blast
The following BLAST results are available for this feature:
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