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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027128 ID=TCONS_00027128|Name=TCONS_00027128|organism=Clytia hemisphaerica|type=transcript|length=1085bp
GCTTGCCCCCCACCCACGCTACTCAACTTGGTTTTAAGCTATACCCTGTT
GCATCTTAATCTTCTGAgatttgaacattttttctgtACATTGATCTTTT
TTCCATAGACAAGTTGAAATATCTTCCATAAGCGGCTGGTTACTGTATAA
ACTTTGTATCAAATATGGTTAAGAATCTTGCAATCGTGCTATCATTTCTG
TTAGCTTTGTCGGAGGCTGCATATGATAAATGTTGTATTGATTTGGAAGG
AAATTGCTCTAAAATGTCGACATGGATTTGTGAGTACCAGGGTGGTCGAT
ATAAAAGCACATGTCGTGCCACCTGTAAAGTATGTCAACCCTCAATACCA
GCTTATCAAAATAACAAGATTACCACAtcacaagaaaaagtgaaggcCAT
TAATAACTTGTGTGCTattgaacaaaataaatatGCTGGTGTTAATCTCA
GATTTCACCCAAAAATGGCTCACTACGCGCAACTTTACGCTGAATATATG
GTAAAGAATGGGTTGACAAACAAACATGATTGTCTGAAACGCTACAATTT
TCCTGGCCTAACAACAATGGTTGGGAATTTGAATGCTTTTTTTGAAGACA
AAGATTTTGGAGAAGCTCTCAAATCATCCATTAAAGCTTGGTATGATTCT
GGATCTAATATGAAGAGTGGGATGACTGACAATCAATATATGGGATGCGG
AGTTGCGTCAAATGGCAAAATTACCAGAGTTGTTTCTTGGTATGGTAAAG
GCAAATGAAGAATGACCTTTAtgttttagaccatgttcataCGCTACTAT
TCCGTTTCGCTCAGAAACGAAATGAacccattctattggttagaagtgac
gtaaaacttgaatttaaccaatagaGTGACTTCATTTCGtttggagcgaa
acggaaccgttacGTGCGAAGATGATCTCAGGGTTGAAAAACTAAACACT
AGAGAAATTTATTAGAAAACAGTAAACATATATTATTTTTAACAAACACT
ATATGATAAAATTATAGTTTGATATATACAAAcctattaaaaaattttct
ttttcctatttttgaAGCACCGCAAttctacaaaa Run BLAST on NCBI protein sequence of TCONS_00027128-protein >TCONS_00027128-protein ID=TCONS_00027128-protein|Name=TCONS_00027128-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
MVKNLAIVLSFLLALSEAAYDKCCIDLEGNCSKMSTWICEYQGGRYKSTC
RATCKVCQPSIPAYQNNKITTSQEKVKAINNLCAIEQNKYAGVNLRFHPK
MAHYAQLYAEYMVKNGLTNKHDCLKRYNFPGLTTMVGNLNAFFEDKDFGE
ALKSSIKAWYDSGSNMKSGMTDNQYMGCGVASNGKITRVVSWYGKGK Run BLAST on NCBI transcript from alignment at sc0000607:122215..127112+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027128 ID=TCONS_00027128|Name=TCONS_00027128|organism=Clytia hemisphaerica|type=transcript|length=4898bp|location=Sequence derived from alignment at sc0000607:122215..127112+ (Clytia hemisphaerica)
GCTTGCCCCCCACCCACGCTACTCAACTTGGTTTTAAGCTATACCCTGTT
GCATCTTAATCTTCTGAgatttgaacattttttctgtACATTGATCTTTT
TTCCATAGACAAGTTGAAATATCTTCCATAAGCGGCTGGTTACTGTATAA
ACTTTGTATCAAATATGGTTAAGAATCTTGCAATCGTGCTATCATTTCTG
TTAGCTTTGTCGGAGGCTGCATATGATAAATGTAAGTAAAGCGGCCTTCA
CTAATTGAATTTTCAAACGATCGGCTATCACCAGAATTTGCCCATAAATT
TTTCACGAGTCGAATATGCAATTATTGGAATTGAGGCACTCAGAAAAAGG
GCGGGAACTTGTTATAAATTTGGATAAGGATAAAATCGGTGTGATCAACT
TATATGATAAAAATAAGAGCTTTCGataaacagacaaaaataaCGCCGCA
AAATTTCTGTTCACTTTTCCCAATGCAAGCttcaaagtaaaaaagtaaTA
GTTGATACCAAACTTAAAATCTTCTCATATCAAATAAAGTCGAGTGTCAC
GTAGCCttgatatccaggctgtaaacttttttgagattttttatgTCTTC
CTAAAGTGATTTTTATTCCAATATCAAAAGACATCGAATGCGTATTTTGT
AAATTCAAATATTGCACAAAACTAAATACTAACGACCACGGGTTTACAAG
ATCAGAATCTAGTGGACCCAGGCTGTAAAATAGCAGAAACATTAGAAAAT
AAAACAGCCGTAAACTTCGgtaattgtcatttttgaataGCGAACCATTA
TGCAAACATCTTTATCGTggtcagcctttcttaatatatctaacataaaa
tttaaaagagtatatcctAGTAAGTGCGAGCACAAACGCAAACCGAATCG
GGAAATCAAACCGAAAAGATCGGGAAACAGAACCCGATTATCGCGATTGA
TCggatttacgcacaattacaaatgaaaaacactgattttaagaaactcc
ttaaccggtgattaatgagaaaataatttacaaattGGACCATAGCTAAA
TTCTTTCTTTACTAAGAGCCCATAAATGTTATTTGCAACCTTTGATTTTG
TACTTAAGTATAaattaaagtatttttattCTGTCTTAAGGTTGTATTGA
TTTGGAAGGAAATTGCTCTAAAATGTCGACATGGATTTGTGAGTACCAGG
GTGGTCGATATAAAAGCACATGTCGTGCCACCTGTAAAGTATGTCAACCC
TCAATACCAGGTAAGAACTATTGTCCGGAAAAAGCCGTTGATATTTCCAT
CGatgatatttcaaattagcaatttcataggattcgtgtatTTCATTTTG
AAGGTTTCTGCACAcaatgctatcgtccgtttaaagggTCAATAAACGTG
GGAAAATATATATGCACAGAGTCAGGGCGTCAGTTTCCTTTACGGGAAAT
AAGTAGCGGTAGAGTTTAGAACACCTCACCTACTGCTCACTCCGCCCCGG
GCTAgccaccattttcaaatttatcccgctttctaaactattcccttttt
ttagtgatcttgtcgACGTCTAAGGTTTCTGTAAAGTTACAATAGCTACA
AAAAGTCGAATGCGTAATGATAAATTGACTTTTCTTCTTCAGCTTATCAA
AATAACAAGATTACCACAtcacaagaaaaagtgaaggcCATTAATAGTAA
GTTTCTTTAACTTTACCATTATTGATGCGTAAAGTCTTATTAACTCTAAA
GAAGAGCATCCATTATGCACATACCATGCTCTGCTTTAAAGAGATGTGGC
GAATGTGAGGATCTGACCTGATCAGTCAGAACTGCGTTACtatttgcttt
taaaatttcgTTTCTTGGTGCAAATGGTTGGTTTAGTCACTGCCCTTTAT
ATATGCTTTATATATACCTTCGAACTCggcaaagcaaaatctttgatcgg
agttttttgtaCCCTAATgacggcactactcaatagcggtgtaaatgcat
cgataGTGCTAGGTCTACTTTGtctcgaatacttttgatgatgtagcgcc
gttagatgttgatttttaacattgcaaagGCTAGccacgggtaccaattc
cagaaaaaactccaatcaaataTGGCAGACATGGCTTGGTCCAGGGGCAT
ATAGAGGTCAGTGGGTTTAGTCAATCAGTACACTCAAAAGCCTATTTAAT
ATCTATCCAAAATCAGGATGAAAAATTGTCAGAGGGGATTGGACAGAATC
TGCTCAGATATCGAAATTATTAGCACATCACACAAAACactcgaaaaagt
tttaccGTTTTTACTTCCTAAAGCTCGAATCcaaataatgaaattaaaac
tCTCGGTCCATTTATTACACTAAAATCAATAAACTTCCAAATTCAAAgtc
caaatttttaaaatgtctaTGGTAATAATGAATCGCAAATTTTCATTTAT
CCCTACTGGGTAAAAGATatctacacccctgtctcacagtcccggtggaa
ctttttcctcagtgggtgTAAAAATTCCTATCGAAATTCAAATGGGGATG
TAAATTCTTTTATTCCagggttaaaaaatccagtgggaatggttttgggA
TGCAGTTTTCAAACATTGAttctcgaatggggatgaaatcaaagtcaaat
tatcagtggggctgaaattccagggtattttcccaccggggacgaaagtt
ttgccaaattttccagttgggCTGGGATCCCAACGGGTCTGTAACACAGA
AGTGTACAACTCGACGGGTCCATGAGACAGGGTTGTGGAAATATCACGGT
TGACTCTTtttaattcgaactcgaacgaggaattttgttgtttttcgaat
tatagagagattcgaattataaaaagtattttaagaagGGTTTCTCTATG
ATGGGGAATGgaaaaagttcgaattatagaaaaactcgaataatagaagt
tcgaataagcgataGCCCACTGTATCTCGACGGGTCAtcactgagacagg
gttgtGAAAATATGATGCTCCATTCTTTTAGACTTGTGTGCTattgaaca
aaataaatatGCTGGTGTTAATCTCAGATTTCACCCAAAAATGGCTCACT
ACGCGCAACTTTACGCTGAATATATGGTAAAGAATGGGTTGACAAACAAA
CATGATTGTCTGAAACGCTACAATTTTCCTGGCCTAACAACAATGGTTGG
GAATTTGAATGCTTTTTTTGAAGACAAAGATTTTGGAGAAGCTCTCAAAT
CATCCATTAAAGCTTGGTAAGTGATTCCGGCAGCACCGCAATAATGCCCA
GAATAttcgaaaataaagaaatggtttcaaatcttagaacaaatgaaatc
tgacgttttgtttttgaattacgtaatcttacgcgttTGAAAAATAGACA
ATGctagggtattatctagcgctatcagccGGTAAGGATCAAAAAACTGA
TAATgagcagggaacgaggttggggaAGTAATCCTTCgccacggcatgac
gtcagaactgggTGACAACAAAACACTTACTAAAGGTTAATTGTATATTG
TcagtaaacataatcttttagtgagttaaaccatagcgTTTCTTTTACCC
TCAAAATCATTAAATCTTATTGGTCAAAAAAGATGTTacatgactttccg
tggcaaagaattGTATTGCTGAAATCGTGAGGACTTTTAATAGctttttg
tttgcttattttggGATATTGCATGTGGGCAACAAgattctcgagatgca
taaatttattggtgacctcgttttcaaacagattttatTACTATGAAATT
TAAATTCCCTAAAAGACAAACattaactttaaaacaaaagtacttgaaat
tcaaaacgtCTCATGAGgtaggtgtaaacaacacaattatcattgtgaat
accgtattacttcgaataaacgcccccttcttttaaacgccccccttttt
tcaaaaattatttaataaacgcccccctcgaataaacgcccccccttAGA
GGGGGCGTTAATTCGAAACACGATTATTTTGACGTAGTGGGATAGAATAA
TACGACGAGTTTACCCTGATTGAGGAAGATGATATTGATATCGACGTAGA
TAATGTAGAAGATGAGATTTTAGTTGttgattaaaaagaaaaataagatc
AAGTCAACAAAATTCGTTTCTGTAGTCCTTTCCATTCTTATcgagttttg
aatttttgtaataaacgccccccccccctaaaatccaaaaaaattcgaag
taatacggtatgtaattttatagcaataaaatctgtttgaaaacgaggac
aacaataaatttatgcatctcgagaagagtgtattaaaaCTCGACTCACA
TTCACACTGTGCAGTATTGGGCTCATGGTGGGACCTAATCAGAAACGCAT
CCcggcaaaaatcagtttttgaaaGCTTAATCCCTATTCTCTAATCTTTA
CAGGTATGATTCTGGATCTAATATGAAGAGTGGGATGACTGACAATCAAT
ATATGGGATGCGGAGTTGCGTCAAATGGCAAAATTACCAGAGTTGTTTCT
TGGTATGGTAAAGGCAAATGAAGAATGACCTTTAtgttttagaccatgtt
cataCGCTACTATTCCGTTTCGCTCAGAAACGAAATGAacccattctatt
ggttagaagtgacgtaaaacttgaatttaaccaatagaGTGACTTCATTT
CGtttggagcgaaacggaaccgttacGTGCGAAGATGATCTCAGGGTTGA
AAAACTAAACACTAGAGAAATTTATTAGAAAACAGTAAACATATATTATT
TTTAACAAACACTATATGATAAAATTATAGTTTGATATATACAAAcctat
taaaaaattttctttttcctatttttgaAGCACCGCAAttctacaaaa Coding sequence (CDS) from alignment at sc0000607:122215..127112+ >TCONS_00027128 ID=TCONS_00027128|Name=TCONS_00027128|organism=Clytia hemisphaerica|type=CDS|length=2970bp|location=Sequence derived from alignment at sc0000607:122215..127112+ (Clytia hemisphaerica)
ATGGTTAAGAATCTTGCAATCGTGCTATCATTTCTGTTAGCTTTGTCGGA
GGCTGCATATGATAAATGTTGTATTGATTTGGAAGGAAATTGCTCTAAAA
TGTCGACATGGATTTGTGAGTACCAGGGTGGTCGATATAAAAGCACATGT
CGTGCCACCTGTAAAGTATGTCAACCCTCAATACCAGCTTATCAAAATAA
CAAGATTACCACAtcacaagaaaaagtgaaggcCATTAATAACTTGTGTG
CTattgaacaaaataaatatGCTGGTGTTAATCTCAGATTTCACCCAAAA
ATGGCTCACTACGCGCAACTTTACGCTGAATATATGGTAAAGAATGGGTT
GACAAACAAACATGATTGTCTGAAACGCTACAATTTTCCTGGCCTAACAA
CAATGGTTGGGAATTTGAATGCTTTTTTTGAAGACAAAGATTTTGGAGAA
GCTCTCAAATCATCCATTAAAGCTTGGTATGATTCTGGATCTAATATGAA
GAGTGGGATGACTGACAATCAATATATGGGATGCGGAGTTGCGTCAAATG
GCAAAATTACCAGAGTTGTTTCTTGGTATGGTAAAGGCAAATGAATGGTT
AAGAATCTTGCAATCGTGCTATCATTTCTGTTAGCTTTGTCGGAGGCTGC
ATATGATAAATGTTGTATTGATTTGGAAGGAAATTGCTCTAAAATGTCGA
CATGGATTTGTGAGTACCAGGGTGGTCGATATAAAAGCACATGTCGTGCC
ACCTGTAAAGTATGTCAACCCTCAATACCAGCTTATCAAAATAACAAGAT
TACCACAtcacaagaaaaagtgaaggcCATTAATAACTTGTGTGCTattg
aacaaaataaatatGCTGGTGTTAATCTCAGATTTCACCCAAAAATGGCT
CACTACGCGCAACTTTACGCTGAATATATGGTAAAGAATGGGTTGACAAA
CAAACATGATTGTCTGAAACGCTACAATTTTCCTGGCCTAACAACAATGG
TTGGGAATTTGAATGCTTTTTTTGAAGACAAAGATTTTGGAGAAGCTCTC
AAATCATCCATTAAAGCTTGGTATGATTCTGGATCTAATATGAAGAGTGG
GATGACTGACAATCAATATATGGGATGCGGAGTTGCGTCAAATGGCAAAA
TTACCAGAGTTGTTTCTTGGTATGGTAAAGGCAAATGAATGGTTAAGAAT
CTTGCAATCGTGCTATCATTTCTGTTAGCTTTGTCGGAGGCTGCATATGA
TAAATGTTGTATTGATTTGGAAGGAAATTGCTCTAAAATGTCGACATGGA
TTTGTGAGTACCAGGGTGGTCGATATAAAAGCACATGTCGTGCCACCTGT
AAAGTATGTCAACCCTCAATACCAGCTTATCAAAATAACAAGATTACCAC
AtcacaagaaaaagtgaaggcCATTAATAACTTGTGTGCTattgaacaaa
ataaatatGCTGGTGTTAATCTCAGATTTCACCCAAAAATGGCTCACTAC
GCGCAACTTTACGCTGAATATATGGTAAAGAATGGGTTGACAAACAAACA
TGATTGTCTGAAACGCTACAATTTTCCTGGCCTAACAACAATGGTTGGGA
ATTTGAATGCTTTTTTTGAAGACAAAGATTTTGGAGAAGCTCTCAAATCA
TCCATTAAAGCTTGGTATGATTCTGGATCTAATATGAAGAGTGGGATGAC
TGACAATCAATATATGGGATGCGGAGTTGCGTCAAATGGCAAAATTACCA
GAGTTGTTTCTTGGTATGGTAAAGGCAAATGAATGGTTAAGAATCTTGCA
ATCGTGCTATCATTTCTGTTAGCTTTGTCGGAGGCTGCATATGATAAATG
TTGTATTGATTTGGAAGGAAATTGCTCTAAAATGTCGACATGGATTTGTG
AGTACCAGGGTGGTCGATATAAAAGCACATGTCGTGCCACCTGTAAAGTA
TGTCAACCCTCAATACCAGCTTATCAAAATAACAAGATTACCACAtcaca
agaaaaagtgaaggcCATTAATAACTTGTGTGCTattgaacaaaataaat
atGCTGGTGTTAATCTCAGATTTCACCCAAAAATGGCTCACTACGCGCAA
CTTTACGCTGAATATATGGTAAAGAATGGGTTGACAAACAAACATGATTG
TCTGAAACGCTACAATTTTCCTGGCCTAACAACAATGGTTGGGAATTTGA
ATGCTTTTTTTGAAGACAAAGATTTTGGAGAAGCTCTCAAATCATCCATT
AAAGCTTGGTATGATTCTGGATCTAATATGAAGAGTGGGATGACTGACAA
TCAATATATGGGATGCGGAGTTGCGTCAAATGGCAAAATTACCAGAGTTG
TTTCTTGGTATGGTAAAGGCAAATGAATGGTTAAGAATCTTGCAATCGTG
CTATCATTTCTGTTAGCTTTGTCGGAGGCTGCATATGATAAATGTTGTAT
TGATTTGGAAGGAAATTGCTCTAAAATGTCGACATGGATTTGTGAGTACC
AGGGTGGTCGATATAAAAGCACATGTCGTGCCACCTGTAAAGTATGTCAA
CCCTCAATACCAGCTTATCAAAATAACAAGATTACCACAtcacaagaaaa
agtgaaggcCATTAATAACTTGTGTGCTattgaacaaaataaatatGCTG
GTGTTAATCTCAGATTTCACCCAAAAATGGCTCACTACGCGCAACTTTAC
GCTGAATATATGGTAAAGAATGGGTTGACAAACAAACATGATTGTCTGAA
ACGCTACAATTTTCCTGGCCTAACAACAATGGTTGGGAATTTGAATGCTT
TTTTTGAAGACAAAGATTTTGGAGAAGCTCTCAAATCATCCATTAAAGCT
TGGTATGATTCTGGATCTAATATGAAGAGTGGGATGACTGACAATCAATA
TATGGGATGCGGAGTTGCGTCAAATGGCAAAATTACCAGAGTTGTTTCTT
GGTATGGTAAAGGCAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027128-exon-sc0000607-1491911889:122215..122445 | TCONS_00027128-exon-sc0000607-1491911889:122215..122445 | Clytia hemisphaerica | exon |
| TCONS_00027128-exon-sc0000607-1510915933:122215..122445 | TCONS_00027128-exon-sc0000607-1510915933:122215..122445 | Clytia hemisphaerica | exon |
| TCONS_00027128-exon-sc0000607-1575043694:122215..122445 | TCONS_00027128-exon-sc0000607-1575043694:122215..122445 | Clytia hemisphaerica | exon |
| TCONS_00027128-exon-sc0000607-1491911889:123355..123474 | TCONS_00027128-exon-sc0000607-1491911889:123355..123474 | Clytia hemisphaerica | exon |
| TCONS_00027128-exon-sc0000607-1510915933:123355..123474 | TCONS_00027128-exon-sc0000607-1510915933:123355..123474 | Clytia hemisphaerica | exon |
| TCONS_00027128-exon-sc0000607-1575043694:123355..123474 | TCONS_00027128-exon-sc0000607-1575043694:123355..123474 | Clytia hemisphaerica | exon |
| TCONS_00027128-exon-sc0000607-1491911889:123857..123910 | TCONS_00027128-exon-sc0000607-1491911889:123857..123910 | Clytia hemisphaerica | exon |
| TCONS_00027128-exon-sc0000607-1510915933:123857..123910 | TCONS_00027128-exon-sc0000607-1510915933:123857..123910 | Clytia hemisphaerica | exon |
| TCONS_00027128-exon-sc0000607-1575043694:123857..123910 | TCONS_00027128-exon-sc0000607-1575043694:123857..123910 | Clytia hemisphaerica | exon |
| TCONS_00027128-exon-sc0000607-1491911889:125246..125480 | TCONS_00027128-exon-sc0000607-1491911889:125246..125480 | Clytia hemisphaerica | exon |
| TCONS_00027128-exon-sc0000607-1510915933:125246..125480 | TCONS_00027128-exon-sc0000607-1510915933:125246..125480 | Clytia hemisphaerica | exon |
| TCONS_00027128-exon-sc0000607-1575043694:125246..125480 | TCONS_00027128-exon-sc0000607-1575043694:125246..125480 | Clytia hemisphaerica | exon |
| TCONS_00027128-exon-sc0000607-1491911889:126668..127112 | TCONS_00027128-exon-sc0000607-1491911889:126668..127112 | Clytia hemisphaerica | exon |
| TCONS_00027128-exon-sc0000607-1510915933:126668..127112 | TCONS_00027128-exon-sc0000607-1510915933:126668..127112 | Clytia hemisphaerica | exon |
| TCONS_00027128-exon-sc0000607-1575043694:126668..127112 | TCONS_00027128-exon-sc0000607-1575043694:126668..127112 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000607 | supercontig | sc0000607:122215..127112 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR014044 | CAP_domain |
Blast
The following BLAST results are available for this feature:
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