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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027121 ID=TCONS_00027121|Name=TCONS_00027121|organism=Clytia hemisphaerica|type=transcript|length=1384bp
CTTGATGGTATTAAAATGGCAACTTCTTGATTTCACGAATCTTATGGAAA
CTTCTAACTGATGATTCTGCAAATTTCTCGCATTTATCCAATCGAATTGT
ATTTCTGCATATATTAGAGATGAAATTTTAACGCTAAAAAAGCTATAATA
TTGATAACACGGATCTTAGAATTTTCTAACAAACGATACCACAGTTTTTT
TCGGATTCATTCGATGAAATTGCTTTTTTTGAGTAATTATGAGGACAGGT
TGGAaaacacttttgattttttcatttgcaCTGGTCTTCGTTTATATTCT
ACAAAGTTGGTTACAATGTAATAATTCAGTTGGCAAAGgaTGTTGGACAA
CAGTTTTCGACATCTCAATGAAAGAATACTCATTATCGTCTTACAAGCAG
CCAACACCTTTAACAAAACCTGGCAATGAAGTTGAACAATCGCAACGTTT
GTCACATCTTAATGATTTCTGTCAACACCGACGCAAACAAAACCAATATA
AGACGAAAAGAAAAGACTTAAAATTTGGAGATAGCTTCATATacaatgat
aaaaagaaatttgtatATTGCCGTATACCAAAAGTAGCTTGTACAACATG
GAAGAAAGTTGTTTTGTATACATTGGGTATTGTCAACACTCATCCGGTCA
ATACCTCCTTGGACACTCTCTACAGTCATCGTATGCCTTACATGGAagac
atcaaaaacaaaacaggacGAATCCGATACATACAAAACCATTATTTCTC
GTTCATGTTTTCACGCCATCCGTTTGATCGACTTTTCTCAGTGTACAGGA
ACAAGTTCATGGACCCGGATCCTTATGGTGGCGTCGCTAGTTATCTTGGC
TATTACGGGCCAATTATTTTACGTTTAAATGGCAAAAGTCCATTCAATCA
TCCTACACGAACCATTGGcgatcaaaaatatttcgatatcagtttcgaaa
tgtttttaacatttttaacgAAGGGCGGACTTAACGCCGACGATCATTGG
GCGCCGCAAACTTCATTATGTCAAATATGTAAATACAAGTTTGATTTTAT
TGGAAGATTTGAACATTTGAGTTCAGATTCGAACAAGATATTCAAGCGCA
TAAACACTGATTTGACTTTTTCAATAGAACGAGATTATAAACAACGAACT
ATTGATATGCTTAAAGAAGCTTACGAGAAAATACCAGTGAAGCTGTTGAt
tgatattttccttttctacaAGGACGATTTTGATGCTTTTGGGTATAATC
CAAAtgagtattttcattttttttttatttaaaagacgTTTATTTCACAG
ACTAGATGGTTACCTACTCTACTGGTTAAATTAGTCTTCGTGCGTCCACA
GAAGTCATCTCCTCTCTCTTACTTTGGAAACCCA Run BLAST on NCBI transcript from alignment at sc0000607:19554..25527+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027121 ID=TCONS_00027121|Name=TCONS_00027121|organism=Clytia hemisphaerica|type=transcript|length=5974bp|location=Sequence derived from alignment at sc0000607:19554..25527+ (Clytia hemisphaerica)
CTTGATGGTATTAAAATGGCAACTTCTTGATTTCACGAATCTTATGGAAA
CTTCTAACTGATGATTCTGCAAATTTCTCGCATTTATCCAATCGAATTGT
ATTTCTGCATATATTAGAGATGAAATTTTAACGCTAAAAAAGCTATAATA
TTGATAACACGGATCTTAGAATTTTCTAACAAACGATACCACAGTTTTTT
TCGGATTCATTCGATGAAATTGCTTTTTTTGAGTAATTATGAGGACAGGT
TGGAaaacacttttgattttttcatttgcaCTGGTCTTCGTTTATATTCT
ACAAAGTTGGTTACAATGTAATAATTCAGTTGGCAAAGGTAGGTTAgctt
tagaccatgttcacgtTCCGTTTCACTCCGGTATGattatgattttcgtt
acggatcgagtgtgttcatattggtttcgtaacgttttggagcaagaaaa
cggagtagttccgttccgataaaaaaagtggagcgaaaccgttccgacct
gttttgctttgtaacgtcttcttttttgacgtttcgaattttgacgttca
cacttgtttcggaaccgtttcggaacacggaacggaacggaaccgtaacg
ttcTGAACATGGCTTTAAGCACGTTTTAAACTATCGAGTTTCAAGGTGAA
GGTATGTAGAGGCGAATCTTCAAGCTTTGCCTAAGAAAAAAAAAGGTACT
TGAAATTGAAACTAGCGCCGTCATATGGATGAAGAATCTAGCACTCTCTT
TCGGAGTCTGGTGGTAACTATCACTTTCAATCCAGTGAAAactcgggggg
gggggcagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
cccccccccccccccccccctccggagGAGGGGATAGCACAACATATAGG
AAATATCCTACACAGCTAGATATTGTATTCAGTTACAAGTTTCCACATGG
TATTAGGCCCAGGAGGGGGCACTTGATTCAAAAAGATCATACGTGCGgcc
ccaaaattaggcctttcaaatcggacccttatggtgcagagaaaattttg
caaaattggaggaaatttgagcgaaaaatctaCCCTTACTGTGCATTTTc
acaaatattttttaccattttcagacaaaatatggtcagattgaGTGCCT
CCCCCGGATATAAGGTCACTTTAGACTAAATGCAACTTTCAAATGAATAT
TTCAGTGCATGTATAGTTTTGAGAggatgataataataataatacagttt
ttgttaaagtttcccagctggcaaacaacgttgtttcaacgtttatataa
tgctcacaacgtccatataacgttagatgaacgttgaaacaacgttgtgt
tccAGCTGGGTTAGTCATCCACTGGCTTCATCTTAAATTTTAGGCCACAC
ACATAAACCCCCTGCTctaatatgttttgatataggggatacTAATCGTG
TATAATAAAATTCCGATCCGATATAGGATGCTCTACTTACCACATACcag
tatttttatgtttttcttttcaaggaTGTTGGACAACAGTTTTCGACATC
TCAATGAAAGAATACGTAAGTAACCTTAATACCCTCAGTTCGCTCATTTT
ATGATACTTATATCAAAAAGTTGTACAAGTTTCTCTAAACAAccccttct
caaagacccactgggatcccttcccactggaaaagttgGCCAAAACATCC
tccaatttttatccccactgaggattATCAAATTAagcaatcctcactgc
aaaatatttactagtttttccatccccactgatttttctgacttgaaaac
aagaGATTTGAAATCCCCAGTtataaaaatatgggaatatcaatccccat
tttgagtttcagtccgttatttctaTCACCACTgactgataaaatcccac
cgggcaTGTGAGAAGGGGTGTCTCTAAGTACGAGATTGCGTAAGTTTTGA
ATGTGTTTGAAACCATAAAGGTTGAAACCAAATTATGAATGGAtaacaaa
cctttttttttgggggggggtgACTTAGCCAAAAATGAGCACTGTATACG
TGTCGTTTTTTTTCACCCTCCCAAAGTCTATCTAAGGGTTACCAAAACAA
CATAACCAGCATAAACGTCATAAACTAAGAAAAGAATACtaatttcacct
tttttttAATCGGATTTCATTCTGGATTTCATTGAAATCTTCTGACATAC
CGAGGCTGATTTCAAGAGTAATTGAATTTAagcctttccggacgcacggg
ccactgggtggcccatgaatcgtgttcctatatgacgcacgggccaccgg
gtggcccatagctttgtaaaagtttttaacagttttcgcgccaaaataca
ataacatggttttgaataatgattttgagataaatttctcgtaacctgca
aaaaaccgcttttcgatatcttgtttacaactagaattataaattttcaa
tgtttgttgtaaatttactgaggctaaatctgtaagggaaaaattgctca
aaaatttggacaagaatcactttactcagattcttggaaagcttttgaca
tgaaattttttttacccagccaggaattcaattctctaaatcatattcaa
agttcaaggcgtaaagcaaatgCCTTTAACTCTATTTTTtgattcaaagt
caaaaattttgcctttccgaaaagaaatctgccgatttttcggtcacgtg
accaggtgtcagccatatttaaaaatttttttttggtatttcaaaacccc
tattacatgtgaaaaaaacgaggtattacttattgtgatatcttttatca
atcactttctattgcattttattgcaaatcaaatttttgtttgcgtcata
tagccttgaaatcatgcgtccggaaagggttaaccAGATTGAGACAGAGG
TGCTCGAAATAATTTGATAAGTGATCTTTTTACAATCATTATAAGCCCTT
AAAAAGGTACAAAAAACGTTTCAAACTTACTTTTCTTAGTCATTATCGTC
TTACAAGCAGCCAACACCTTTAACAAAACCTGGCAATGAAGTTGAACAAT
CGCAACGTTTGTCACATCTTAATGATTTCTGTCAACACCGACGCAAACAA
AACCAATATAAGACGAAAAGAAAAGACTTAAAATTTGGAGATAGCTTCAT
ATacaatgataaaaagaaatttgtatATTGCCGTATACCAAAAGTAGCTT
GTACAACATGGAAGAAAGTTGTTTTGTATACATTGGGTATTGTCAACACT
CATCCGGTCAATACCTCCTTGGACACTGTGAGTATACATTCTTTTAATAC
ACCCCATCTCACAGACCCGGTAGGATTTTATCAGCCAGTGGGGGTGTAAA
GATATCGGACCAAAAGTCGATGGGGTTGATATTCCGATGTTTTTTCTTGC
TTGGGATTTGAATTACATTGTCTTCTAGTCATAAAAATCAGCGGGGATGG
AAAATTAGCACATTATTTAGCAGTGGGGATTTGCTTATCTGATTATTTCC
AACGGGGACAATATTTTAGCAAATTTTTCCAGTGGGAAGGGGTCTTTGAA
TGTTCTTAACATTTTGAGCCTAAAAATGTTCTTAACCTGCTCTTATTTTC
ACCGTTTTGTGGTGTATTCTTGTGTCATTCCATAAGACATCAGGAATTTT
CGTAGTCAGCAAAGCCTTAAAATGTTTGTAACCTGCTGTTAGTTATAATA
AGGCAATCAAAGCCCTATTGCGCGTCTTAAATAGCTTGTTCTTATAAAAT
ATCTACAACGATTTGATTAATTAGTAAGTACAGGTACTGAGGATAATTAA
AATCAATTAACCATTACCGCCTGTCATCTTGCATTGTTTCTCAAAATTAA
ACATTTATGTTTCAAATTCTTATGTTTTGCCAATGTCTCCAACGCAATGA
ATTCTTTCAGTCTTTTTCAAGCTGAGATGAAATCTCTCACTTTCACTCAA
TCTTTCGTTGAGCAGAGGTTACCGTGGGGATAAGGTCTGAGAAGCATTAT
TACACCACCCACGAGTATATTCTTTATTTTAATTTATTCTAATTTATTAA
AGTCCTTTCGCTTTAGGCATACATAGACCATAGATTTTTAAAGCCCGAAG
GGCTAGATATCGTGCTTTTGCTGAAACGTGTGCCAAGGTTAGGTAGAAAG
TCCTATCTAAGTCACGTGACATTACAATAAAATTTCAGCGCTTGACCAAT
CAGAAGCTTCGTGGGTTTTCGAAAACAATAACAGTAATACTTTTTGTGAT
ATTCAATTTTTTTTGCTTGGAAGAGCTTAATGCACTCCATCTAGCCCTTC
GGGCTTTATGAATCTATGGCTTAGACTAGAGGCGTGATTAACAGATTTGC
AATACGTTATTTTCAAATAAAAGCCTTGCTTCATTCTTTTTTTACTTTCC
AAAAACAACGAAAATTTGGCGGACCGTAAAACAGTCCGCACTAAGCAAAA
GCATATTACCATATACTACTAGGCCACTTAATCGCGCCATCCAGTCAATA
AAAATAGCTTTAAGTGGACCCCGGACTATAGGCATCGGTAGCGTAGCCAA
GAGGGGCACAAAATTTGTGTAGAAGAGCAGATTTTTATGACACAGTAGTT
ATCTTTTTAAAATATGAATAGATAACTACTGTGTCATAAAAGTCTGCTCT
CCTACACAAATTTTGCGCCCCCTGTCTACACTACTGGGCATGTATTGCTA
TTATTTCATTGCTATCATGTAGAAACCACTCTAGGTAAATCGGTCTAATT
ACCCTGGCATGTTTTCGATGAATGCACTCCTAGAAGGAATGGTTTTTGAA
ATTTCAACAAAACAccttttcgaccgtagtcgtgcAGTCAGGCGCTGCCa
cttttatcccactaaactcgatccaaagCGGACAAAACAATGCCCACGCG
GCAATTGGccgctacggtcgaaaaggtgtatttaatTGTATTTTTATCTC
CTTACAGCTCTACAGTCATCGTATGCCTTACATGGAagacatcaaaaaca
aaacaggacGAATCCGATACATACAAAACCATTATTTCTCGTTCATGTTT
TCACGCCATCCGTTTGATCGACTTTTCTCAGTGTACAGGAACAAGTTCAT
GGACCCGGATCCTTATGGTGGCGTCGCTAGTTATCTTGGCTATTACGGGC
CAATTATTTTACGTTTAAATGGCAAAAGTCCATTCAATCATCCTACACGA
ACCATTGGcgatcaaaaatatttcgatatcagtttcgaaatgtttttaac
atttttaacgAAGGGCGGACTTAACGCCGACGATCATTGGGCGCCGCAAA
CTTCATTATGTCAAATATGTAAATACAAGTTTGATTTTATTGGAAGATTT
GAACATTTGAGTTCAGATTCGAACAAGATATTCAAGCGCATAAACACTGA
TTTGACTTTTTCAATAGAACGAGATTATAAACAACGAACTATTGATATGC
TTAAAGAAGCTTACGAGAAAATACCAGTGAAGCTGTTGAttgatattttc
cttttctacaAGGACGATTTTGATGCTTTTGGGTATAATCCAAAtgagta
ttttcattttttttttatttaaaagacgTTTATTTCACAGACTAGATGGT
TACCTACTCTACTGGTTAAATTAGTCTTCGTGCGTCCACAGAAGTCATCT
CCTCTCTCTTACTTTGGAAACCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027121-exon-sc0000607-1491911889:19554..19891 | TCONS_00027121-exon-sc0000607-1491911889:19554..19891 | Clytia hemisphaerica | exon |
| TCONS_00027121-exon-sc0000607-1510915933:19554..19891 | TCONS_00027121-exon-sc0000607-1510915933:19554..19891 | Clytia hemisphaerica | exon |
| TCONS_00027121-exon-sc0000607-1575043694:19554..19891 | TCONS_00027121-exon-sc0000607-1575043694:19554..19891 | Clytia hemisphaerica | exon |
| TCONS_00027121-exon-sc0000607-1491911889:21378..21418 | TCONS_00027121-exon-sc0000607-1491911889:21378..21418 | Clytia hemisphaerica | exon |
| TCONS_00027121-exon-sc0000607-1510915933:21378..21418 | TCONS_00027121-exon-sc0000607-1510915933:21378..21418 | Clytia hemisphaerica | exon |
| TCONS_00027121-exon-sc0000607-1575043694:21378..21418 | TCONS_00027121-exon-sc0000607-1575043694:21378..21418 | Clytia hemisphaerica | exon |
| TCONS_00027121-exon-sc0000607-1491911889:22843..23130 | TCONS_00027121-exon-sc0000607-1491911889:22843..23130 | Clytia hemisphaerica | exon |
| TCONS_00027121-exon-sc0000607-1510915933:22843..23130 | TCONS_00027121-exon-sc0000607-1510915933:22843..23130 | Clytia hemisphaerica | exon |
| TCONS_00027121-exon-sc0000607-1575043694:22843..23130 | TCONS_00027121-exon-sc0000607-1575043694:22843..23130 | Clytia hemisphaerica | exon |
| TCONS_00027121-exon-sc0000607-1491911889:24811..25527 | TCONS_00027121-exon-sc0000607-1491911889:24811..25527 | Clytia hemisphaerica | exon |
| TCONS_00027121-exon-sc0000607-1510915933:24811..25527 | TCONS_00027121-exon-sc0000607-1510915933:24811..25527 | Clytia hemisphaerica | exon |
| TCONS_00027121-exon-sc0000607-1575043694:24811..25527 | TCONS_00027121-exon-sc0000607-1575043694:24811..25527 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000607 | supercontig | sc0000607:19554..25527 + |
Blast
BLAST of TCONS_00027121 vs. Swiss-Prot (Human)
Match: CHSTE (Carbohydrate sulfotransferase 14 OS=Homo sapiens GN=CHST14 PE=1 SV=2) HSP 1 Score: 123.25 bits (308), Expect = 5.605e-31 Identity = 81/251 (32.27%), Postives = 125/251 (49.80%), Query Frame = 2
Query: 536 FIYNDKKKFVYCRIPKVACTTWKKVVLYTLGIVNTHPVNTSLDTLYSHR--MPYMEDIKNKTGRIRYIQNHYFSFMFSRHPFDRLFSVYRNKFMDPDPYGGVASYLGYYGPIILRL----NGKSPFNHPTRTIGDQKYFDISFEMFLTFLT-KGGLNADDHWAPQTSLCQICKYKFDFIGRFEHLSSDSNKIFK--RINTDLTFSIERD-YKQRTIDMLKEAYEKIPVKLLIDIFLFYKDDFDAFGYN-PN 1255
+ +D+ +F+YC +PKVAC+ WK+V+ G++++ V +D HR + ++ D++ + IRY HYF F+F R P +RL S YRNKF G + Y YG I+R G SP GD D++F FL +L + ++HW P LCQ C +DF+G +E L +D+N++ + R + F + Y+ + + L P LL D+ Y DF F Y PN
Sbjct: 141 ILVSDRYRFLYCYVPKVACSNWKRVMKVLAGVLDSVDVRLKMD----HRSDLVFLADLRPEE--IRYRLQHYFKFLFVREPLERLLSAYRNKF------GEIREYQQRYGAEIVRRYRAGAGPSP-------AGD----DVTFPEFLRYLVDEDPERMNEHWMPVYHLCQPCAVHYDFVGSYERLEADANQVLEWVRAPPHVRFPARQAWYRPASPESLHYHLCSAPRALLQDVLPKYILDFSLFAYPLPN 368
The following BLAST results are available for this feature:
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