|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027116 ID=TCONS_00027116|Name=TCONS_00027116|organism=Clytia hemisphaerica|type=transcript|length=1603bp
tgaagaaaaaagcGAAGAACATCAGAAACACCCAGTGTACACAGAAAATC
CTTTTCTTATCAGAAAAATGACTGTCTCGTAAAAAGTCAgtaggattttt
caaaaatgtttttcctctACTTTTCCAAATCGACGATTCTTTGTCTTGTA
GATTATGTTGCTTTATACGAGCGACGATTCGATCCATCCAATCTACCACT
ATTTTATATTTATGGTTGATAGATTGTATTGTTTGTGCCGCATGCCCTGT
CGCAGAGAAATATCCAAATCCGAAATATATAATGCAACATCCATTTAGCT
TCTCATTACTGTCTAACTCAATTAATGCTAGATCGCTAATGTACAACAAG
AAATCAGCTTCTTCGATTTGTGTTCCATCAAAATGGGAATTAATTCGTAC
CAAATTCCGAAACGGTCCTTTGACATCGTCTGTATATTTATGTGACAACA
ACTCCAGCGTAAATGTTTTGACACCCGTAAATTTTTTGGCACCAGCTTTT
GATACTACCATATCATAAATCGTTTCCATAATTTCGAAATATGTAAAGGC
GAGACAAGACAGAATAGCGTCATCATTGCTAATGCTAGTCATAGTGAAGG
ACAAATCTCCCCGATCCAAATTGGGCATATTTGATAAAGATAGATTCCTA
AAGATCTTATTTATTTCATCTAGCTCTGCTCGCTTGATTAATAAGCATAA
GTTTTGTCCGggaataaaaaagtttgatatacACTCTTGTTCTATCATTC
TCTCTACATTTTTACAAAGCGTTTCATGAAACTCTTGTGTATTCCATTCT
GTTTGAGGGTGCTCTTTTTCATAAGTAGCTGATAAAGATAAGAAAATGGT
TTTCAACAAGTAGGTTGGTATCTCTTTAGCTGACATCAGGGAATGTTTTA
AATGCAAAAATGCTTTACGTTGATAGTACGGTAAATGGAGTAAGATCTCC
AACTCAACTAACGAAAATGAAATCCTCCATTCTAACTTGGTAAGTGAGCT
ACCGGGAAAACTCTTAGCAATAAGAAATAAAGGTACATTTTTTAGTTTGC
TTTTAAGCTCATGTATGGGGAAACATTCCAAGAGCTCTTTCGGCCATTCA
GCCAGTCGTAAACCAATCACATAATCTTTGTCAGAGTAAGTAATAGCAGC
ATTTGTTTTAGATGTGTCTTCAAAATTATACCGATGCCTCTTATGAGGCT
CCTGACCCGTCAGAAACAAAGGAGCCAGTTTCTGCTGGACAATATGCGAA
TACAAAAATCTCCCGTTCGTATCCTCAATAGTATAAAAGCCTGGGTTCTC
TGTGGGCTTCCAATAAAAATCTCCTGTTGGATCACCATGGCGTTTCTCAC
GAAAATCACGAACCAGACCAGGACCAATTTCATAAAGATAATCATAATCT
GAACGATTTACGTAAAGAAATTCAGCACGACTTCCTGTGAGATATCTTTG
CACCAGGGTAGGAAATAAAACATGAGAAGGTTCATAGCCCTCTACCATGA
AAAGGATAGTTTCTGATCTCTTCAGTGTTTTATATGCAACTTCTGCTTCA
TAATTATCTTGTCTTTGCTCTGGTTGGTTAGTAAGAAGAGGGGTTGCTTC
GTC Run BLAST on NCBI protein sequence of TCONS_00027116-protein >TCONS_00027116-protein ID=TCONS_00027116-protein|Name=TCONS_00027116-protein|organism=Clytia hemisphaerica|type=polypeptide|length=534bp
DEATPLLTNQPEQRQDNYEAEVAYKTLKRSETILFMVEGYEPSHVLFPTL
VQRYLTGSRAEFLYVNRSDYDYLYEIGPGLVRDFREKRHGDPTGDFYWKP
TENPGFYTIEDTNGRFLYSHIVQQKLAPLFLTGQEPHKRHRYNFEDTSKT
NAAITYSDKDYVIGLRLAEWPKELLECFPIHELKSKLKNVPLFLIAKSFP
GSSLTKLEWRISFSLVELEILLHLPYYQRKAFLHLKHSLMSAKEIPTYLL
KTIFLSLSATYEKEHPQTEWNTQEFHETLCKNVERMIEQECISNFFIPGQ
NLCLLIKRAELDEINKIFRNLSLSNMPNLDRGDLSFTMTSISNDDAILSC
LAFTYFEIMETIYDMVVSKAGAKKFTGVKTFTLELLSHKYTDDVKGPFRN
LVRINSHFDGTQIEEADFLLYISDLALIELDSNEKLNGCCIIYFGFGYFS
ATGHAAQTIQSINHKYKIVVDWMDRIVARIKQHNLQDKESSIWKSRGKTF
LKNPTDFLRDSHFSDKKRIFCVHWVFLMFFAFFF Run BLAST on NCBI transcript from alignment at sc0000606:191492..193094 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027116 ID=TCONS_00027116|Name=TCONS_00027116|organism=Clytia hemisphaerica|type=transcript|length=1603bp|location=Sequence derived from alignment at sc0000606:191492..193094 (Clytia hemisphaerica)
GACGAAGCAACCCCTCTTCTTACTAACCAACCAGAGCAAAGACAAGATAA
TTATGAAGCAGAAGTTGCATATAAAACACTGAAGAGATCAGAAACTATCC
TTTTCATGGTAGAGGGCTATGAACCTTCTCATGTTTTATTTCCTACCCTG
GTGCAAAGATATCTCACAGGAAGTCGTGCTGAATTTCTTTACGTAAATCG
TTCAGATTATGATTATCTTTATGAAATTGGTCCTGGTCTGGTTCGTGATT
TTCGTGAGAAACGCCATGGTGATCCAACAGGAGATTTTTATTGGAAGCCC
ACAGAGAACCCAGGCTTTTATACTATTGAGGATACGAACGGGAGATTTTT
GTATTCGCATATTGTCCAGCAGAAACTGGCTCCTTTGTTTCTGACGGGTC
AGGAGCCTCATAAGAGGCATCGGTATAATTTTGAAGACACATCTAAAACA
AATGCTGCTATTACTTACTCTGACAAAGATTATGTGATTGGTTTACGACT
GGCTGAATGGCCGAAAGAGCTCTTGGAATGTTTCCCCATACATGAGCTTA
AAAGCAAACTAAAAAATGTACCTTTATTTCTTATTGCTAAGAGTTTTCCC
GGTAGCTCACTTACCAAGTTAGAATGGAGGATTTCATTTTCGTTAGTTGA
GTTGGAGATCTTACTCCATTTACCGTACTATCAACGTAAAGCATTTTTGC
ATTTAAAACATTCCCTGATGTCAGCTAAAGAGATACCAACCTACTTGTTG
AAAACCATTTTCTTATCTTTATCAGCTACTTATGAAAAAGAGCACCCTCA
AACAGAATGGAATACACAAGAGTTTCATGAAACGCTTTGTAAAAATGTAG
AGAGAATGATAGAACAAGAGTgtatatcaaacttttttattccCGGACAA
AACTTATGCTTATTAATCAAGCGAGCAGAGCTAGATGAAATAAATAAGAT
CTTTAGGAATCTATCTTTATCAAATATGCCCAATTTGGATCGGGGAGATT
TGTCCTTCACTATGACTAGCATTAGCAATGATGACGCTATTCTGTCTTGT
CTCGCCTTTACATATTTCGAAATTATGGAAACGATTTATGATATGGTAGT
ATCAAAAGCTGGTGCCAAAAAATTTACGGGTGTCAAAACATTTACGCTGG
AGTTGTTGTCACATAAATATACAGACGATGTCAAAGGACCGTTTCGGAAT
TTGGTACGAATTAATTCCCATTTTGATGGAACACAAATCGAAGAAGCTGA
TTTCTTGTTGTACATTAGCGATCTAGCATTAATTGAGTTAGACAGTAATG
AGAAGCTAAATGGATGTTGCATTATATATTTCGGATTTGGATATTTCTCT
GCGACAGGGCATGCGGCACAAACAATACAATCTATCAACCATAAATATAA
AATAGTGGTAGATTGGATGGATCGAATCGTCGCTCGTATAAAGCAACATA
ATCTACAAGACAAAGAATCGTCGATTTGGAAAAGTagaggaaaaacattt
ttgaaaaatcctacTGACTTTTTACGAGACAGTCATTTTTCTGATAAGAA
AAGGATTTTCTGTGTACACTGGGTGTTTCTGATGTTCTTCgcttttttct
tca Coding sequence (CDS) from alignment at sc0000606:191492..193094 >TCONS_00027116 ID=TCONS_00027116|Name=TCONS_00027116|organism=Clytia hemisphaerica|type=CDS|length=1602bp|location=Sequence derived from alignment at sc0000606:191492..193094 (Clytia hemisphaerica)
GACGAAGCAACCCCTCTTCTTACTAACCAACCAGAGCAAAGACAAGATAA
TTATGAAGCAGAAGTTGCATATAAAACACTGAAGAGATCAGAAACTATCC
TTTTCATGGTAGAGGGCTATGAACCTTCTCATGTTTTATTTCCTACCCTG
GTGCAAAGATATCTCACAGGAAGTCGTGCTGAATTTCTTTACGTAAATCG
TTCAGATTATGATTATCTTTATGAAATTGGTCCTGGTCTGGTTCGTGATT
TTCGTGAGAAACGCCATGGTGATCCAACAGGAGATTTTTATTGGAAGCCC
ACAGAGAACCCAGGCTTTTATACTATTGAGGATACGAACGGGAGATTTTT
GTATTCGCATATTGTCCAGCAGAAACTGGCTCCTTTGTTTCTGACGGGTC
AGGAGCCTCATAAGAGGCATCGGTATAATTTTGAAGACACATCTAAAACA
AATGCTGCTATTACTTACTCTGACAAAGATTATGTGATTGGTTTACGACT
GGCTGAATGGCCGAAAGAGCTCTTGGAATGTTTCCCCATACATGAGCTTA
AAAGCAAACTAAAAAATGTACCTTTATTTCTTATTGCTAAGAGTTTTCCC
GGTAGCTCACTTACCAAGTTAGAATGGAGGATTTCATTTTCGTTAGTTGA
GTTGGAGATCTTACTCCATTTACCGTACTATCAACGTAAAGCATTTTTGC
ATTTAAAACATTCCCTGATGTCAGCTAAAGAGATACCAACCTACTTGTTG
AAAACCATTTTCTTATCTTTATCAGCTACTTATGAAAAAGAGCACCCTCA
AACAGAATGGAATACACAAGAGTTTCATGAAACGCTTTGTAAAAATGTAG
AGAGAATGATAGAACAAGAGTgtatatcaaacttttttattccCGGACAA
AACTTATGCTTATTAATCAAGCGAGCAGAGCTAGATGAAATAAATAAGAT
CTTTAGGAATCTATCTTTATCAAATATGCCCAATTTGGATCGGGGAGATT
TGTCCTTCACTATGACTAGCATTAGCAATGATGACGCTATTCTGTCTTGT
CTCGCCTTTACATATTTCGAAATTATGGAAACGATTTATGATATGGTAGT
ATCAAAAGCTGGTGCCAAAAAATTTACGGGTGTCAAAACATTTACGCTGG
AGTTGTTGTCACATAAATATACAGACGATGTCAAAGGACCGTTTCGGAAT
TTGGTACGAATTAATTCCCATTTTGATGGAACACAAATCGAAGAAGCTGA
TTTCTTGTTGTACATTAGCGATCTAGCATTAATTGAGTTAGACAGTAATG
AGAAGCTAAATGGATGTTGCATTATATATTTCGGATTTGGATATTTCTCT
GCGACAGGGCATGCGGCACAAACAATACAATCTATCAACCATAAATATAA
AATAGTGGTAGATTGGATGGATCGAATCGTCGCTCGTATAAAGCAACATA
ATCTACAAGACAAAGAATCGTCGATTTGGAAAAGTagaggaaaaacattt
ttgaaaaatcctacTGACTTTTTACGAGACAGTCATTTTTCTGATAAGAA
AAGGATTTTCTGTGTACACTGGGTGTTTCTGATGTTCTTCgcttttttct
tc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027116-exon-sc0000606-1491911889:191492..193094 | TCONS_00027116-exon-sc0000606-1491911889:191492..193094 | Clytia hemisphaerica | exon |
| TCONS_00027116-exon-sc0000606-1510915933:191492..193094 | TCONS_00027116-exon-sc0000606-1510915933:191492..193094 | Clytia hemisphaerica | exon |
| TCONS_00027116-exon-sc0000606-1575043694:191492..193094 | TCONS_00027116-exon-sc0000606-1575043694:191492..193094 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000606 | supercontig | sc0000606:191492..193094 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
|
