TCONS_00027115 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027115
Unique NameTCONS_00027115
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length384

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027115 ID=TCONS_00027115|Name=TCONS_00027115|organism=Clytia hemisphaerica|type=transcript|length=384bp
ACACTGCAAGGGTCTAATCATGGATTTAAATCCATGGTCTAATGTAAGCC
TTATTTTTGGTCGACCATGTGTTTTAAAATAGAAGGAAGGGTTTGGAAGA
TAGTTTTGGAGAGGAAAGTTTCTTCTGCAATTGGAGAATGTTGTTTGTGG
CTTCCATTTTTATACTTTCTAAAATCCTCATTTAGGCCTggttagacgat
gttatcgtccgttgcattgatagtaaaggcgggaaaatatacATGCGGAG
TTTACAtccgttatggcggtatacggaaaagaaatcttttttcataGATA
GCGGTTTGTCTTAGTCTAGGCGGCCTGGTAAAAATGGGGGCGGCATTATC
CTTCATATTATTGATGAGTAAAATACCTATCTTT
Run BLAST on NCBI

transcript from alignment at sc0000606:150759..151142

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027115 ID=TCONS_00027115|Name=TCONS_00027115|organism=Clytia hemisphaerica|type=transcript|length=384bp|location=Sequence derived from alignment at sc0000606:150759..151142 (Clytia hemisphaerica)
AAAGATAGGTATTTTACTCATCAATAATATGAAGGATAATGCCGCCCCCA
TTTTTACCAGGCCGCCTAGACTAAGACAAACCGCTATCtatgaaaaaaga
tttcttttccgtataccgccataacggaTGTAAACTCCGCATgtatattt
tcccgcctttactatcaatgcaacggacgataacatcgtctaaccAGGCC
TAAATGAGGATTTTAGAAAGTATAAAAATGGAAGCCACAAACAACATTCT
CCAATTGCAGAAGAAACTTTCCTCTCCAAAACTATCTTCCAAACCCTTCC
TTCTATTTTAAAACACATGGTCGACCAAAAATAAGGCTTACATTAGACCA
TGGATTTAAATCCATGATTAGACCCTTGCAGTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015238XLOC_015238Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027115-exon-sc0000606-1491911889:150759..151142TCONS_00027115-exon-sc0000606-1491911889:150759..151142Clytia hemisphaericaexon
TCONS_00027115-exon-sc0000606-1510915933:150759..151142TCONS_00027115-exon-sc0000606-1510915933:150759..151142Clytia hemisphaericaexon
TCONS_00027115-exon-sc0000606-1575043694:150759..151142TCONS_00027115-exon-sc0000606-1575043694:150759..151142Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000606supercontigsc0000606:150759..151142 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.62184	0.593081	0.459082	0	0.820178	0	0.260641	0.244009	0	0.423218	0	0.270034	0.404488	0.280043	0.115117	0.494152	0	0.155988	0	0.902048	0.784043	1.14729	0.232446	0.211327	0	0	1.6679	2.0767	0.225014	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027115 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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