TCONS_00027113 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027113
Unique NameTCONS_00027113
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length291

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027113 ID=TCONS_00027113|Name=TCONS_00027113|organism=Clytia hemisphaerica|type=transcript|length=291bp
TGGTACGTGGAACAAACGTCCAAATGGCGCCCATCTAACGCCCACGACCA
TCTTTTTCATATTAGTTGGGTATAAAGTGCAATATATCAGATATTTGGTT
GAATTCCCCTGTAAATATCtttgttatatttttatgaCAATATTTAATTG
AGTTTTATATAGTTATACATTCAATTTATAATCCAAGAAAAATTTTGGAC
TAAAAGACAAAACAATACGAGTTCTCATTCATCCTCATTTACTTCCAAAG
GGAATACCATTTCTGAAAGACATTGTAGCTATTTGTTATGG
Run BLAST on NCBI

transcript from alignment at sc0000606:84230..84520

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027113 ID=TCONS_00027113|Name=TCONS_00027113|organism=Clytia hemisphaerica|type=transcript|length=291bp|location=Sequence derived from alignment at sc0000606:84230..84520 (Clytia hemisphaerica)
CCATAACAAATAGCTACAATGTCTTTCAGAAATGGTATTCCCTTTGGAAG
TAAATGAGGATGAATGAGAACTCGTATTGTTTTGTCTTTTAGTCCAAAAT
TTTTCTTGGATTATAAATTGAATGTATAACTATATAAAACTCAATTAAAT
ATTGtcataaaaatataacaaaGATATTTACAGGGGAATTCAACCAAATA
TCTGATATATTGCACTTTATACCCAACTAATATGAAAAAGATGGTCGTGG
GCGTTAGATGGGCGCCATTTGGACGTTTGTTCCACGTACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015236XLOC_015236Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027113-exon-sc0000606-1491911889:84230..84520TCONS_00027113-exon-sc0000606-1491911889:84230..84520Clytia hemisphaericaexon
TCONS_00027113-exon-sc0000606-1510915933:84230..84520TCONS_00027113-exon-sc0000606-1510915933:84230..84520Clytia hemisphaericaexon
TCONS_00027113-exon-sc0000606-1575043694:84230..84520TCONS_00027113-exon-sc0000606-1575043694:84230..84520Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000606supercontigsc0000606:84230..84520 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	2.02563	4.16834	0	0	1.29444	1.32676	2.29124	3.35666	8.40937	9.14835	6.42548	4.49361	0.462831	1.2392	0	1.26167	1.91386	3.41236
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027113 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top