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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027099 ID=TCONS_00027099|Name=TCONS_00027099|organism=Clytia hemisphaerica|type=transcript|length=1319bp
agaatatgaAAAATGACAGAATTATAAAAATATGACGTGTTTCTCCAAAC
AAACACAGTAAGACGCTACGTTTAAAATAGGAATCGTAATTTTTGCATTT
CCTGAAGAGACGCTCCTTCTCAAATACAAAATTGAAACCAGGCTGGCAca
taaagttgaaaaaaaagtaaactttGTTTATTGTTTGCATTAATGACCAT
CTTAGGAAGTTGAATTTCATCATAAACAATGGATTTTTGGAGTATCTAAC
TAGGTGAGGCAATCTGAACAAAAGATTTTTGCACTTTGCAAGATGCTTCT
AGTTTTTGTGTATAAAAGCAGCTAGTTTTCTCACTGAAGTATTCATTAAC
AGTAATCACGACACAAGCAGTATCCACAGTGTTAGTGGATAAAGACATTT
TAAACAGTAAGTATTGAAATCAACTGGTTTACATATTTTGATAGATTATT
AACCAAACTTTCAGCTTTTCTGCTTTTTTTCTAAGCGCTAATTTGAGATG
TACTTGCAACACCAAAGATCACACAGTTCTAAACGGAAAAGATTAAGCTC
CTCaacatttgtttttaaattttgtttgataatGTTTTGATTGAATCTAT
TTTCCAtgaatttaaaaatgttttggttCAGTACCAACAGTCACTCTTAA
cacactttcactttcgctttcactTTTAAAACCTACCTAACGAGCTTTAG
CCACATTTCAACGGGAGCTAGATTCTTTGAGTTTTGACTTCACTTCTCTC
ATTAGAGATATATGGCAGTGTAAAATATATCATTATAACAttcatataat
tttttcctCCATTCCTCTCAATTTAGCTTGTCAATCAAACTAATACCAAA
CGACATATCAAAATGCCTCAATGGGGTGGTGGTAAAAAATGTGCTCGATG
TGACAAAAGTGTGTATTCCAACGAAGAAATCATAGCTGCTGGAGGTTCAT
GGCATAAACGAGGATGTTTCACCTGTAAAGATTGTAACAAATCTTTAGAT
TCACACACTGTTGCGGAACGAAAAGCAGAAGTACCAGGAGAGGTCGGAGA
AATTTACTGCAAATCATGCTACGGTAAAAATTTCGGACCAAAAGGATATG
GATTTGGTGGCGGTGCTGGAGCTTTGGCCGACACTGGAAAGTCATAATCA
TCTCTCACGTACCCATCTTGAGCCTATCCACATCCATTCCCTCTActttt
agtttgtttttaaaaagaaacaaataaacatatattatttttttcagata
acTTTTATCGCCCAAAACTTttgtaaatttatttatataagaaaattgat
aataaagtaataatttttt Run BLAST on NCBI transcript from alignment at sc0000606:81356..83212- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027099 ID=TCONS_00027099|Name=TCONS_00027099|organism=Clytia hemisphaerica|type=transcript|length=1857bp|location=Sequence derived from alignment at sc0000606:81356..83212- (Clytia hemisphaerica)
AGAATATGAAAAATGACAGAATTATAAAAATATGACGTGTTTCTCCAAAC
AAACACAGTAAGACGCTACGTTTAAAATAGGAATCGTAATTTTTGCATTT
CCTGAAGAGACGCTCCTTCTCAAATACAAAATTGAAACCAGGCTGGCACA
TAAAGTTGAAAAAAAAGTAAACTTTGTTTATTGTTTGCATTAATGACCAT
CTTAGGAAGTTGAATTTCATCATAAACAATGGATTTTTGGAGTATCTAAC
TAGGTGAGGCAATCTGAACAAAAGATTTTTGCACTTTGCAAGATGCTTCT
AGTTTTTGTGTATAAAAGCAGCTAGTTTTCTCACTGAAGTATTCATTAAC
AGTAATCACGACACAAGCAGTATCCACAGTGTTAGTGGATAAAGACATTT
TAAACAGTAAGTATTGAAATCAACTGGTTTACATATTTTGATAGATTATT
AACCAAACTTTCAGCTTTTCTGCTTTTTTTCTAAGCGCTAATTTGAGATG
TACTTGCAACACCAAAGATCACACAGTTCTAAACGGAAAAGATTAAGCTC
CTCAACATTTGTTTTTAAATTTTGTTTGATAATGTTTTGATTGAATCTAT
TTTCCATGAATTTAAAAATGTTTTGGTTCAGTACCAACAGTCACTCTTAA
CACACTTTCACTTTCGCTTTCACTTTTAAAACCTACCTAACGAGCTTTAG
CCACATTTCAACGGGAGCTAGATTCTTTGAGTTTTGACTTCACTTCTCTC
ATTAGAGATATATGGCAGTGTAAAATATATCATTATAACATTCATATAAT
TTTTTCCTCCATTCCTCTCAATTTAGCTTGTCAATCAAACTAATACCAAA
CGACATATCAAAATGCCTGTGAGTATATATCAATATCATATGTTTTTGTT
TTGATGATAATAATTATGATTTAAAATTTTGACATGTTTCAAATTCTTGC
CTGTATCTAATATCAATATATTTAAACTGTATAGAGTACGACATTAGATA
TCTATCTAGCTTTTCATGATTTGAAGTGTGTTACTCTGTTTGGCCCTGCC
AAATAATTATATTTTGTATACCAACAAAAGTAAAATTCTAAATTTTGAGG
CCATTGAAAGCGTTGTACACAATGGATCAAGATGACTTATTTTTATATTT
ACAGCAATGGGGTGGTGGTAAAAAATGTGCTCGATGTGACAAAAGTGTGT
ATTCCAACGAAGAAATCATAGCTGCTGGAGGTTCATGGCATAAACGAGGA
TGTTTCACCTGTAAAGATTGTAACAAATCTTTAGATTCACACACTGTTGC
GGAACGAAAAGCAGGTAAGCAAAGGAGGATATTTATGATAGTAACTTCAT
CACTGCATTACTTTATTGTATCATTCACAAATCATGAATTCTATTGTTAA
AATTGTTCATTCATAAATCTGCTCTTACCATGAGATTTAAGAAAATAGTC
AAAGAAATATCTCTGTGACTCTTTTTTTTACATTTGGTAAATTTGGACGT
GCCTTAATTTGCCTGAGTTGAGCTTATTTTTGTTTTTCAAACATTATTTT
TGTGCTCGTATTATAGAAGTACCAGGAGAGGTCGGAGAAATTTACTGCAA
ATCATGCTACGGTAAAAATTTCGGACCAAAAGGATATGGATTTGGTGGCG
GTGCTGGAGCTTTGGCCGACACTGGAAAGTCATAATCATCTCTCACGTAC
CCATCTTGAGCCTATCCACATCCATTCCCTCTACTTTTAGTTTGTTTTTA
AAAAGAAACAAATAAACATATATTATTTTTTTCAGATAACTTTTATCGCC
CAAAACTTTTGTAAATTTATTTATATAAGAAAATTGATAATAAAGTAATA
ATTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027099-exon-sc0000606-1575043694:82345..83212 | TCONS_00027099-exon-sc0000606-1575043694:82345..83212 | Clytia hemisphaerica | exon |
| TCONS_00027099-exon-sc0000606-1575043694:81899..82058 | TCONS_00027099-exon-sc0000606-1575043694:81899..82058 | Clytia hemisphaerica | exon |
| TCONS_00027099-exon-sc0000606-1575043694:81356..81646 | TCONS_00027099-exon-sc0000606-1575043694:81356..81646 | Clytia hemisphaerica | exon |
| TCONS_00027099-exon-sc0000606-1510915933:82345..83212 | TCONS_00027099-exon-sc0000606-1510915933:82345..83212 | Clytia hemisphaerica | exon |
| TCONS_00027099-exon-sc0000606-1510915933:81899..82058 | TCONS_00027099-exon-sc0000606-1510915933:81899..82058 | Clytia hemisphaerica | exon |
| TCONS_00027099-exon-sc0000606-1510915933:81356..81646 | TCONS_00027099-exon-sc0000606-1510915933:81356..81646 | Clytia hemisphaerica | exon |
| TCONS_00027099-exon-sc0000606-1491911889:82345..83212 | TCONS_00027099-exon-sc0000606-1491911889:82345..83212 | Clytia hemisphaerica | exon |
| TCONS_00027099-exon-sc0000606-1491911889:81899..82058 | TCONS_00027099-exon-sc0000606-1491911889:81899..82058 | Clytia hemisphaerica | exon |
| TCONS_00027099-exon-sc0000606-1491911889:81356..81646 | TCONS_00027099-exon-sc0000606-1491911889:81356..81646 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000606 | supercontig | sc0000606:81356..83212 - |
Blast
The following BLAST results are available for this feature:
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