TCONS_00027072 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027072
Unique NameTCONS_00027072
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4248

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027072 ID=TCONS_00027072|Name=TCONS_00027072|organism=Clytia hemisphaerica|type=transcript|length=4248bp
ATGAAATTGTTTAAGTTAAGTAACTTGACGCTTTTGCAGGTTTGATTGCA
TAAGTCTGGCAAAGCGCAAGAGAAAAATCACGAAGCCTTGAAAAATACCT
GGACAATCCTGACACATTTTGGATAGATACAAAGACAATGGGTACAATGA
AATATATTAGtgaagaaaagtattgatatatgaCTATTACAATGTATAGC
AGCTGGGAGACAATCTATTTccaatacaatgacttcttcCCTGGATTATT
CGATCAATTCGAGCAGTATAAATAAAGAAACTTCTAATTTAAAGAATCAT
TCAAAACTTCTGCAGTTAGGACTCAGTAACTCGAAATTAGAGCAACCTTT
GTTGAATGACTTCCTTCGTCGTTTGCACAGATCGAAATTACGACGCCTTT
TGTATTGTGAATATAAAAGTGGAGGATTTATTGTTACTGAACAAATACGA
GGAGCAGTTGATAGTATTATCTCAACAGATAAAGACAATTCATTGGACTC
GAGATTAAAAAGTGTTCCTATGCATCAGGTATTTTTATGTAAATGTGGCT
GGTTGCTTTTTAACCCATCTACATTACCATGCGGACACACAATGTGCAAG
CACTGTGCAGATGAGAATCTGTTTTGTATTTACTGTGGCCACACAATAGA
TGACGTTAGCTCTCCGAATTTATTTCTGGTTCATCTTCTCAGCACATGGT
TCCCTGGTGAATATCAAAGTTCCCAACACAAGCTTGATGCCAAGATATTA
CTGGCATCTGAAGATTACGAACTTGCTCTTAACGAAATCGATATTTGCAT
TTCAATACTTGATGATGATTATTCAGCATTTCAATTACGATCAgaaattt
atttgaaacttgaaaattataaaGACGCATTAGTGGATGCAACTAAATCA
TGTGAACTAAACTCTGAATGTGGTAAATCTCAGTTCATCAGAGGTAGTTG
TTTTTCACATTTAGGCAAGTTAAATGAAGCAATTGACGCATTTCAGTTAT
GCTTAGAACTGGAACCAGAAGATATGGCATTATGTTCTCTGGTTATTAAT
AAACTTGATTCAATTCTGTCACTTCCGGATACTGGCTCTAAACTCTCAGA
TTCTGATTCTTCATCAGATGAAGGAGTGGGTGGCAAGCGTTCAAAGTTAG
ATACATCAACTAATGAAAACACCGAACCGTCATGTCGCCACGCTAGTTCT
AGTAGTTCAAATACATCATCCACCACACCTTCAAATACACAGGCTAACAA
ATCTTACACTGATAAAATTGATGTCGAAAGAAGGAAAAATGATTGTACTG
AAGCTCATACACCAGATACAGACTACAAAAATGATTCAGCTACTAAAACA
GAAAATTATGTGTCAAATGTCGAAGAGAAAATTCATGGTGTACCAAAAAA
ACTATTATCAGAAGAAGATTTCGAGTGTAAATTATGTTACGAATTACTGT
TCAAACCTATTACCACTACGTGCGGTCATGTGTTTTGCAAGAACTGTTTA
CTTAGAAGTCTAGATCATAATGTTACTTGCCCTATATGTCGAGTCTCATT
GGCTGGTTTTTTGAGTAACCCTTTGAAACCTGTCACTAAGCTTATTGAAG
ATATTTTGAGTTTGTTTTTCACCGATGAATTTGGTAAAAGAAGACAAGCG
TACATGAGCCGTATGGAAAGGCTTGCAAGGGTTGGCAAAGATGAGGAGGT
TGAGATTCCGATATTTGTGTGTTCAATTGCTTTTCCTTCGGTCAAATGTC
CGTTACATATTTTCGAACCTAAATGTCGATTAATGATACGTGAATGCATC
GAGTCCGGCTCCAGGAAGTTCGGGATGTGTGTCCCTCAGGGTGACGATGG
TTTNAGTCCGGCTCCAGGAAGTTTGGGATGTGTGTCCCTCAGGGTGACGA
TGGTTTCTCTGAAATGGGTACGATATGCGAAATTACCAAGATACAAAATC
TGCCGGATGGACGGTATGTCATAACAGCAACTGCCGGACAGCGCTTTATA
ATCCAACAGAAAAGCGTTGAAGATTCTATTGACTAtgcaaaagtaaaata
tttttgtgatgAGCCAGAAGATTTGAACAATGAAACGTTTAATGCTGCTT
CGAGGCGTGCTTACGATCATTTATCACAGTACATTACGTCACTCAACGAA
TCTGAGCAAGATTGTATTATAAATGCATTGGGACCAATACCTCAATATGA
AAGTAATTTCTCACACTTTCAACACGGTGTACCTTGGATCTGGTGGGGTC
TTGCTGCCTTACCTTTAAACTtttcagcaaaacttgttttgcTAAAGTCA
AAATGTGCAAGCGAACGTATGTTGAGTTTGCAAAGATTCTTACGGTTTTT
ATCTCGAATGCAATCGACGCCAAACGGTGGACAGCAAAATAACACACCGA
TATCTCAACACAACTAAACTTATATATACTATTATACATTGCTTTGtagt
ttttatataattttgtaCAGAATTAGTaatgtaattattttcaaatattc
atcctttcttttttatctttaaaagaTATCACAAACATCACGCCTAAGGA
TATCTTAATACAAAACACTAGATGAAGCTTCTATGTCCCtagctgaagca
aaattttgccCATATTTGATAAAATGTCGCCAAAATTTCCTCGCATAAcc
cttgaaatttagaaatcaTGACAGTGTCAAAATACTTGAGTATGTAAAAC
CAAGATTTCTGCTGTGGTCTACTTTTATTAAAGATAGtgcattgtttttt
cgcttCACCTGTCCTATCGAGAAATGCCGTGTTGTTTCTATTTTTTATGG
AACTTTgatgtactctcgggtacctaataaccgGGATGGgtagaaaaatt
ctcaaaacttaataagtggactggaataaaaatatcctgggtggaaaatt
aatTATAATTGAAAAGTTACAAACAcaaattcgaaaattttgagaatgaT
GAAATGTCAACTTTTATCTACTGACGTCGTTATAAATCTACGAAAATTTT
AGTTTGGAAATAATTCTAGTATGATATGGTGCATCCTGTCAAAGTTTTAT
GATTAACCATGAACAACATAtgcacccctgtgtcacagacccactgggac
cccagccccactggaaaatttggcaaaaaaattatccccgatgggaaaat
accctggaattgccgccccactgagaaattcggggaaatttactttgatt
ttataCCCACTCGAAATCCAATGATTTAAAATTGCACtacaaaaccatcc
ccactggattttttaaccttggaataatagaatttctatcctcgTTGGGc
tttcaaaaataatatttatccccactgagCGAAAAACTTCCACCGGGGTT
CTGAGATAGGGGTGTACATATGTTCAAGGATGAACCCTTTAACCTCaagc
ttttaagatttttgcAGCCAAAGTGAAGTTAAACACAATGTTTTCACCTA
GAAAAAAGTCAGTTGAAAACTCTGTAATTAGAGAAAAGTCAGTTGAAAAc
tctcaaaaattatggtgaaaACTCTCTATACTAAAAATAAGCCAGTTGAA
AACTCTCAAAAGTTATGGTGAAAACCCTCTtactcaacaaaaaaaattca
acccaAGCGTACAGAGGCGTTATCATTGCGGGGGAGGCTACCAATACCTC
TACCTCCCTTTGTAATTGCCGGCCATCCTGGATGGTACTGTCTGAAACGA
TATACAAAACTTCAAATTTCGCTCTTGTCGTGCGTGTTTTTGTATATCAG
GGTTTATAtgcaattggtttgttttggtcctAATCGGGACTCTTGATTTA
GCCTCACTTTCATGCCCCTTTTAAGGCCTCAGATTTTCCATATGGgcctt
tttcagtttttcagtgCAGACTGCTGTTTTTTACTCCGCCTCCCTCCCCA
GCATCTTGGTGGAAGCTTTCCTAAGTCCAATTTTATTTAATGCTTAGGTC
ACCgaatattctaatatttttcttagattttcttTATGTGAACCGTTTCT
TTTAAGGTCTATACCATGTATTTGCCATTTGCTGGCTTGTTGATTCTATA
TACCTATTATGTTTTTATTCTGTCGTTATTTACTATTTACTGTGCTCCTg
taatcatttgttttattttcctagtttatattcctgtacatattttgtct
gtgccgtTTTTCACAGTGTTTATTCCGTCAAGAGctgaaaataccatgta
gaCATATCTGTGTGCTTTCTGCCTATCCTTGCTTTAGCCTTTTGTGTT
Run BLAST on NCBI

protein sequence of TCONS_00027072-protein

>TCONS_00027072-protein ID=TCONS_00027072-protein|Name=TCONS_00027072-protein|organism=Clytia hemisphaerica|type=polypeptide|length=581bp
MTSSLDYSINSSSINKETSNLKNHSKLLQLGLSNSKLEQPLLNDFLRRLH
RSKLRRLLYCEYKSGGFIVTEQIRGAVDSIISTDKDNSLDSRLKSVPMHQ
VFLCKCGWLLFNPSTLPCGHTMCKHCADENLFCIYCGHTIDDVSSPNLFL
VHLLSTWFPGEYQSSQHKLDAKILLASEDYELALNEIDICISILDDDYSA
FQLRSEIYLKLENYKDALVDATKSCELNSECGKSQFIRGSCFSHLGKLNE
AIDAFQLCLELEPEDMALCSLVINKLDSILSLPDTGSKLSDSDSSSDEGV
GGKRSKLDTSTNENTEPSCRHASSSSSNTSSTTPSNTQANKSYTDKIDVE
RRKNDCTEAHTPDTDYKNDSATKTENYVSNVEEKIHGVPKKLLSEEDFEC
KLCYELLFKPITTTCGHVFCKNCLLRSLDHNVTCPICRVSLAGFLSNPLK
PVTKLIEDILSLFFTDEFGKRRQAYMSRMERLARVGKDEEVEIPIFVCSI
AFPSVKCPLHIFEPKCRLMIRECIESGSRKFGMCVPQGDDGXSPAPGSLG
CVSLRVTMVSLKWVRYAKLPRYKICRMDGMS
Run BLAST on NCBI

transcript from alignment at sc0000606:3596..12752+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027072 ID=TCONS_00027072|Name=TCONS_00027072|organism=Clytia hemisphaerica|type=transcript|length=9157bp|location=Sequence derived from alignment at sc0000606:3596..12752+ (Clytia hemisphaerica)
ATGAAATTGTTTAAGTTAAGTAACTTGACGCTTTTGCAGGTTTGATTGCA TAAGTCTGGCAAAGCGCAAGAGAAAAATCACGAAGCCTTGAAAAATACCT GGACAATCCTGACACATTTTGGATAGGTCTGTTGATTTCCAAGTGGCATA TTTTATGAATCTTTTGTTCTAATCATCTGTATCTGTCTTGTTTGTTTGAT GGAGAAATGTAATAACTGAAAGAAACGAAAATTTAGACTGTTAGAACATT TGTTTATGAAAACCTTTGCTAACCAGTCTCATCGGAACTCTTCTCCTTGA ACTGACACTGAATCTCTGGTTGGAAAGTTTCAACCATAAAAAGGTTGTTG ATTTCTTAACCTATCGATTGTGTTTTTTACATGGCTTTATAAAACTCCCT TGGCGCGCGCATTACTTGTGTAATGCCGAAATACCTTCCTGCCTCTTGTC TTATTATTCTGTCATAGCCAATCTATATCTGGCCTTTCAAATATTTAAAG ACCAATTCCGTGTGAAGTCAAGAAAGAATATGTACAGGATGATTTAGTAC CACCTTGATAGCTCTTCAAATATTTCTCGTTCGGCGGACTTGCTAGGGGC GCagtttttggtttgttttttttttcattgcctGGTGAAAAttatgtcag ttaggaacaCATGTAGTTTGCTTGAGGTTAGCTTCAAGGTACCAGGTGAG CTCTTCAAATATTTCTCGTTCGGCGGACCTGCTAGGGGAGCAGTttatgg ttgtttttttttcattgttgaAAATTATGTCAGTTAGGAATATGTAGTTT GCTTGAGGTTAGCTTAAAGGTACCGGGTACGCCACAAAAAACTCTCTTta taaaaactaatttttccgaaatctgaaaattctaaaagaactatagaaag ataaacttaaattttgatgggtcatttattaaattcggttcattagatca aaagttaggctctatttaataaaaaagttactttttgaaagtgctcaaaa acgttaaaaatcaacGTACagtatcaaattaaacagaagcataattacat gatgcatcaTTATTTTCgattaagtcattaaaaatgatcgTTTGTTGTAG AGTCAAGTTACCAGTGCGCGAATtgccccagtgcacgaacgaacatcttt gaacttgaaaaaaacaaccaaaaacaaacttctatagaacttccttcgtg cagcagaatcctcaaactatcCCTAGCAATctgtccaaaaattaaaataa acggagcacttgaacaacaccaaaccgattttgaacgaggccaagtaaaa aaattacaaaactctggatttttgtaaacatggctGATCGCAAgaggaaa tgttttttataagaagatttgcgcaagaagagttctgaaaatgactttcc tcttttaaaaacctgttaTCTTCCATCACATAAAATTTCATCGAAGCATG TTAgctcattaattcaaaatcaatagaaacatatcaccagtagttgatat aaaaaagggTCCAGTCCGCAAATGATCCAaacaccatattcaaaatgaag acattgtaACGTCAAAACATTCCAAAGCTGGtgatctcaattaaaaaaga agacactacattgccgCCATTTTCAATGaccaaaacttgaaaaagaaaac aaaaatggacgacaagaaaatatttacaaaaataaacaggttagtaaAAG GCTAaagctcttataaaaaatacgtttttttagtgaaaaagcgcgtggtt tgaaaagttcaaatctGGGAAGAGAGTTTAAGTATTACCTGTGAGCGgag ctctaattttttctttcaaaagatcgtaCGTTCCCGCTCTGGTTCCTCGT TCGTGGACTGGGTCCGAATAGCGCTTGCTTTAGCAacttattattccaag aagaagctttcaaataaattgaaaacaaactgaaagaaggacttcaagct TGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNctctcgggtacctaatagccgggggg gttggaataagcgggggggttggaaaaaatctcaaaacttaataagcggg ggggttggaataaaaatgtcttgagtggaaaatttttgaaaaggaggcta atacagctgaattaggacaaaaaagggaactttcaaaaacattttcccaa aaattaataagcggggggggttggaataagaatgtcctgggtggaaaatt ttcgaaaaattaattagcggggggacggctattaagtacccgagagtacg agatggtcaaaaaggatttatgtaaaaaccaaaagtaagtgagaaaagtg aaaaatgagttTGGCGTTAGTGCACTGGGCATCCCCCTCtataaaggaag attgaatttcaataaaaggcagaaaatttgtcgaaaaaagctaaaaaaac tggtaaaattcataattaTACACCAAATATGGGTTTCTAGAAGTGTGGCG TAATTAGTTGTGCAATAGAACGTCACGTTCTCCTAACGGTctagacttaa actcctatatcaggattagaaactaggctagtcttacctcttatGTTTGC CTTTGCATCAATACTGTACAATGCCGACACAAGtcgacacaacacattga caaataatccctgtgagaagtttatatcgaaatctgttGCAAAAACGAAT GTGgcctcttctactgattgcttcatGGCGCTACCTTGCGGACTACTGTA TTTATTTGATTTCCACCAATAAGATTGTCACACTTTACACAGCCCTTCTA TTTGGCACCTGTGGTCTTTCAGTGCTATACCCAACAGGGGGCTGTAAAAT CTCACCTTCCATACATAACACCTCTTTTATTTGATTCAATCCGTGATCTT AAGGTGTAGCCTGTTTCTCATCTTTGATTCTCTGAAGAAAGCAGAAATTg gatgcaagagttagattgttaaaacaaagtgccataaaaacTCATTGaat taaaagaagaacttaaaatcttaaaatattttcattttgaagaattggtg ccaaaaagtgaaacatagaaaagttttaatatttattgctttaaaagtga aaatgagggatttggaaaattttttctagGTTTAGTTTTTTGTACAAATG TAACTATGGacaagcaccccgttgctaagatgttagcttgaaattgaaat gaaaccactgaaaactaAAGCAAAATCAGCCCGCACTCCctatcccgtaa tcttgatatatcagtttaagtctatactgcctAAAGGAGTATTACACAAA GTCATGGTAGGCATGGGACTCCAAGGTATAGCTGGAAACTTTTCATTGTG TGCAGGTAGAACTTTTTCAAGGTCTATTTAGCTAGATCTTTTGCTTGATG CAATACCATTCATTAGTATGGATGTCACCCCTAAATTATGCAGTCAAAAT GGTATTGATTCTAGCTTTATTGATTATCTAGGACCTTCAGTTAGTCAAAT AAACTAGGTCTATTGGATAACTTTTAAATAATGAAGTTGTCtaattgttt tgtattttaaaacACAGTTGTTACCTAATGCTGTGTCTGTAACCCgccaa agttttgtaaaaacaGTCTATATGGCAGTACACAGTCTAGGTGGTTGTCC AGCCTAAACATCACTAACTGACTCCTGTAGAATTGCATAATCTTAGTGTC AGGATAAACCTGATAGTGTATCAATTTACTAACTCAATTTTTCATCTTAA TCATTTAATTAATGTCTGCTAGTTATGTTTTAATTTaccttttaaaaaca ttttgatttcTTCAGTCCCTCTTTTTAAAGGTAAATAGTCTTTCTCTTTG ACAGAGGTGAAAAAAATGGTTCCAGATGATGGCACCTATCTAAAAAACAA ATATCTGATATAGGGAATTTACAATTGAAAGCCAGCCTTAGGGGATTAGC TGTCACAGGATTAGAGTAACCTTATTAATATTACActtttatcggcgatc caaaatatctgcaatctgattggttaaaaagagtacaatatttcttgtat tttacatataaaaatataaattgacgaaaaataTGTTgctgcattgtagc ggtagcagtaatctaacgtcactttgctataAAAATACCCTAcacttttt tccaacacaaaaagtgcattacATATTACTAATCAAGTATGTATCTAACA TGGAAAAATGAGTGGGACAATTTATCAATGGGAAAGGCGCGGTTTTTGAA AATAACCTTAGTTCAAATTATGATTAGTGTTAGGTAAGCCATAAATTGTG TTAAATAACTTGTATGAGTATTTATATGAATATCTAGcataataatattt tcaagttaTTTAACGCAATTGGGTtatctaacgttaaatgaaaTTTGAGC CAAGGTATATAAATGTAATAGGTAGGTTCCATAACTTCAAAAATttggtt ttcattttttttcttggtTCTGTTGATTACTTTACCAGGCAGTTTCATAA GTTATTATTTCTTTTCTCATTTTAGATACAAAGACAATGGGTACAATGAA ATATATTAGtgaagaaaagtattgatatatgaCTATTACAATGTATAGCA GCTGGGAGACAATCTATTTccaatacaatgacttcttcCCTGGATTATTC GATCAATTCGAGCAGTATAAATAAAGAAACTTCTAATTTAAAGAATCATT CAAAACTTCTGCAGTTAGGACTCAGTAACTCGAAATTAGAGCAACCTTTG TTGAATGACTTCCTTCGTCGTTTGCACAGATCGAAATTACGACGCCTTTT GTATTGTGAATATAAAAGTGGAGGATTTATTGTTACTGAACAAATACGAG GAGCAGTTGATAGTATTATCTCAACAGATAAAGACAATTCATTGGACTCG AGATTAAAAAGTGTTCCTATGCATCAGGTATTTTTATGTAAATGTGGCTG GTTGCTTTTTAACCCATCTACATTACCATGCGGACACACAATGTGCAAGC ACTGTGCAGATGAGAATCTGTTTTGTATTTACTGTGGCCACACAATAGAT GACGTTAGCTCTCCGAATTTATTTCTGGTTCATCTTCTCAGCACATGGTT CCCTGGTGAATATCAAAGTTCCCAACACAAGCTTGATGCCAAGATATTAC TGGCATCTGAAGATTACGAACTTGCTCTTAACGAAATCGATATTTGCATT TCAATACTTGATGATGATTATTCAGCATTTCAATTACGATCAgaaattta tttgaaacttgaaaattataaaGACGCATTAGTGGATGCAACTAAATCAT GTGAACTAAACTCTGAATGTGGTAAATCTCAGTTCATCAGAGGTAGTTGT TTTTCACATTTAGGCAAGTTAAATGAAGCAATTGACGCATTTCAGTTATG CTTAGAACTGGAACCAGAAGATATGGCATTATGTTCTCTGGTTATTAATA AACTTGATTCAATTCTGTCACTTCCGGATACTGGCTCTAAACTCTCAGAT TCTGATTCTTCATCAGATGAAGGAGTGGGTGGCAAGCGTTCAAAGTTAGA TACATCAACTAATGAAAACACCGAACCGTCATGTCGCCACGCTAGTTCTA GTAGTTCAAATACATCATCCACCACACCTTCAAATACACAGGCTAACAAA TCTTACACTGATAAAATTGATGTCGAAAGAAGGAAAAATGATTGTACTGA AGCTCATACACCAGATACAGACTACAAAAATGATTCAGCTACTAAAACAG AAAATTATGTGTCAAATGTCGAAGAGAAAATTCATGGTGTACCAAAAAAA CTATTATCAGAAGAAGATTTCGAGTGTAAATTATGTTACGAATTACTGTT CAAACCTATTACCACTACGTGCGGTCATGTGTTTTGCAAGAACTGTTTAC TTAGAAGTCTAGATCATAATGTTACTTGCCCTATATGTCGAGTCTCATTG GCTGGTTTTTTGAGTAACCCTTTGAAACCTGTCACTAAGCTTATTGAAGA TATTTTGAGTTTGTTTTTCACCGATGAATTTGGTAAAAGAAGACAAGCGT ACATGAGCCGTATGGAAAGGCTTGCAAGGTAAGAACCTTAGTAGCCTTTA TTTATTACTCCTATTACATCTTCTTTCGTTAATTCACTTCTGTTTTCTTA TAAATCGTTTCAGGTCAGAGAGAAATCTATAAGAGATATATTTTTTACGT AAGATTTTGCGATGAACATatgttttttatgtcaaatacaGAATTTCGAA AGGCACTTGTCAGACTTTCTACTCATtaagttgttgttttttcctaATCG TTTCAATATTGTTGTTGTTCTCTTTTGCAGGGTTGGCAAAGATGAGGAGG TTGAGATTCCGATATTTGTGTGTTCAATTGCTTTTCCTTCGGTCAAATGT CCGTTACATATTTTCGAACCTAAATGTCGATTAATGATACGTGAATGCAT CGAGTCCGGCTCCAGGAAGTTCGGGATGTGTGTCCCTCAGGGTGACGATG GTTTNAGTCCGGCTCCAGGAAGTTTGGGATGTGTGTCCCTCAGGGTGACG ATGGTTTCTCTGAAATGGGTAAAAgcaagattttcattttctcaaTACGT ACCACTATATTTTACAATGGATTgattcttagttttttttcacaagATTT TAGTTTCAACTACAGTATGTCAAACAAAAGATCGTCTCgtaaatatctta aaatttatcACACCATCCctttaataacttttttaatACCATTACTTATT GAACTTTCTCTTCTTTTATTCTAAAGGTACGATATGCGAAATTACCAAGA TACAAAATCTGCCGGATGGACGGTATGTCATAACAGCAACTGCCGGACAG CGCTTTATAATCCAACAGAAAAGCGTTGAAGATTCTATTGACTAtgcaaa agtaaaatatttttgtgatgAGCCAGAAGATTTGAACAATGAAACGTTTA ATGCTGCTTCGAGGCGTGCTTACGATCATTTATCACAGTACATTACGTCA CTCAACGAATCTGAGCAAGATTGTATTATAAATGCATTGGGACCAATACC TCAATATGAAAGTAATTTCTCACACTTTCAACACGGTGTACCTTGGATCT GGTGGGGTCTTGCTGCCTTACCTTTAAACTtttcagcaaaacttgttttg cTAAAGTCAAAATGTGCAAGCGAACGTATGTTGAGTTTGCAAAGATTCTT ACGGTTTTTATCTCGAATGCAATCGACGCCAAACGGTGGACAGCAAAATA ACACACCGATATCTCAACACAACTAAACTTATATATACTATTATACATTG CTTTGtagtttttatataattttgtaCAGAATTAGTaatgtaattatttt caaatattcatcctttcttttttatctttaaaagaTATCACAAACATCAC GCCTAAGGATATCTTAATACAAAACACTAGATGAAGCTTCTATGTCCCta gctgaagcaaaattttgccCATATTTGATAAAATGTCGCCAAAATTTCCT CGCATAAcccttgaaatttagaaatcaTGACAGTGTCAAAATACTTGAGT ATGTAAAACCAAGATTTCTGCTGTGGTCTACTTTTATTAAAGATAGtgca ttgttttttcgcttCACCTGTCCTATCGAGAAATGCCGTGTTGTTTCTAT TTTTTATGGAACTTTgatgtactctcgggtacctaataaccgGGATGGgt agaaaaattctcaaaacttaataagtggactggaataaaaatatcctggg tggaaaattaatTATAATTGAAAAGTTACAAACAcaaattcgaaaatttt gagaatgaTGAAATGTCAACTTTTATCTACTGACGTCGTTATAAATCTAC GAAAATTTTAGTTTGGAAATAATTCTAGTATGATATGGTGCATCCTGTCA AAGTTTTATGATTAACCATGAACAACATAtgcacccctgtgtcacagacc cactgggaccccagccccactggaaaatttggcaaaaaaattatccccga tgggaaaataccctggaattgccgccccactgagaaattcggggaaattt actttgattttataCCCACTCGAAATCCAATGATTTAAAATTGCACtaca aaaccatccccactggattttttaaccttggaataatagaatttctatcc tcgTTGGGctttcaaaaataatatttatccccactgagCGAAAAACTTCC ACCGGGGTTCTGAGATAGGGGTGTACATATGTTCAAGGATGAACCCTTTA ACCTCaagcttttaagatttttgcAGCCAAAGTGAAGTTAAACACAATGT TTTCACCTAGAAAAAAGTCAGTTGAAAACTCTGTAATTAGAGAAAAGTCA GTTGAAAActctcaaaaattatggtgaaaACTCTCTATACTAAAAATAAG CCAGTTGAAAACTCTCAAAAGTTATGGTGAAAACCCTCTtactcaacaaa aaaaattcaacccaAGCGTACAGAGGCGTTATCATTGCGGGGGAGGCTAC CAATACCTCTACCTCCCTTTGTAATTGCCGGCCATCCTGGATGGTACTGT CTGAAACGATATACAAAACTTCAAATTTCGCTCTTGTCGTGCGTGTTTTT GTATATCAGGGTTTATAtgcaattggtttgttttggtcctAATCGGGACT CTTGATTTAGCCTCACTTTCATGCCCCTTTTAAGGCCTCAGATTTTCCAT ATGGgcctttttcagtttttcagtgCAGACTGCTGTTTTTTACTCCGCCT CCCTCCCCAGCATCTTGGTGGAAGCTTTCCTAAGTCCAATTTTATTTAAT GCTTAGGTCACCgaatattctaatatttttcttagattttcttTATGTGA ACCGTTTCTTTTAAGGTCTATACCATGTATTTGCCATTTGCTGGCTTGTT GATTCTATATACCTATTATGTTTTTATTCTGTCGTTATTTACTATTTACT GTGCTCCTgtaatcatttgttttattttcctagtttatattcctgtacat attttgtctgtgccgtTTTTCACAGTGTTTATTCCGTCAAGAGctgaaaa taccatgtagaCATATCTGTGTGCTTTCTGCCTATCCTTGCTTTAGCCTT TTGTGTT

Coding sequence (CDS) from alignment at sc0000606:3596..12752+

>TCONS_00027072 ID=TCONS_00027072|Name=TCONS_00027072|organism=Clytia hemisphaerica|type=CDS|length=5238bp|location=Sequence derived from alignment at sc0000606:3596..12752+ (Clytia hemisphaerica)
atgacttcttcCCTGGATTATTCGATCAATTCGAGCAGTATAAATAAAGA
AACTTCTAATTTAAAGAATCATTCAAAACTTCTGCAGTTAGGACTCAGTA
ACTCGAAATTAGAGCAACCTTTGTTGAATGACTTCCTTCGTCGTTTGCAC
AGATCGAAATTACGACGCCTTTTGTATTGTGAATATAAAAGTGGAGGATT
TATTGTTACTGAACAAATACGAGGAGCAGTTGATAGTATTATCTCAACAG
ATAAAGACAATTCATTGGACTCGAGATTAAAAAGTGTTCCTATGCATCAG
GTATTTTTATGTAAATGTGGCTGGTTGCTTTTTAACCCATCTACATTACC
ATGCGGACACACAATGTGCAAGCACTGTGCAGATGAGAATCTGTTTTGTA
TTTACTGTGGCCACACAATAGATGACGTTAGCTCTCCGAATTTATTTCTG
GTTCATCTTCTCAGCACATGGTTCCCTGGTGAATATCAAAGTTCCCAACA
CAAGCTTGATGCCAAGATATTACTGGCATCTGAAGATTACGAACTTGCTC
TTAACGAAATCGATATTTGCATTTCAATACTTGATGATGATTATTCAGCA
TTTCAATTACGATCAgaaatttatttgaaacttgaaaattataaaGACGC
ATTAGTGGATGCAACTAAATCATGTGAACTAAACTCTGAATGTGGTAAAT
CTCAGTTCATCAGAGGTAGTTGTTTTTCACATTTAGGCAAGTTAAATGAA
GCAATTGACGCATTTCAGTTATGCTTAGAACTGGAACCAGAAGATATGGC
ATTATGTTCTCTGGTTATTAATAAACTTGATTCAATTCTGTCACTTCCGG
ATACTGGCTCTAAACTCTCAGATTCTGATTCTTCATCAGATGAAGGAGTG
GGTGGCAAGCGTTCAAAGTTAGATACATCAACTAATGAAAACACCGAACC
GTCATGTCGCCACGCTAGTTCTAGTAGTTCAAATACATCATCCACCACAC
CTTCAAATACACAGGCTAACAAATCTTACACTGATAAAATTGATGTCGAA
AGAAGGAAAAATGATTGTACTGAAGCTCATACACCAGATACAGACTACAA
AAATGATTCAGCTACTAAAACAGAAAATTATGTGTCAAATGTCGAAGAGA
AAATTCATGGTGTACCAAAAAAACTATTATCAGAAGAAGATTTCGAGTGT
AAATTATGTTACGAATTACTGTTCAAACCTATTACCACTACGTGCGGTCA
TGTGTTTTGCAAGAACTGTTTACTTAGAAGTCTAGATCATAATGTTACTT
GCCCTATATGTCGAGTCTCATTGGCTGGTTTTTTGAGTAACCCTTTGAAA
CCTGTCACTAAGCTTATTGAAGATATTTTGAGTTTGTTTTTCACCGATGA
ATTTGGTAAAAGAAGACAAGCGTACATGAGCCGTATGGAAAGGCTTGCAA
GGGTTGGCAAAGATGAGGAGGTTGAGATTCCGATATTTGTGTGTTCAATT
GCTTTTCCTTCGGTCAAATGTCCGTTACATATTTTCGAACCTAAATGTCG
ATTAATGATACGTGAATGCATCGAGTCCGGCTCCAGGAAGTTCGGGATGT
GTGTCCCTCAGGGTGACGATGGTTTNAGTCCGGCTCCAGGAAGTTTGGGA
TGTGTGTCCCTCAGGGTGACGATGGTTTCTCTGAAATGGGTACGATATGC
GAAATTACCAAGATACAAAATCTGCCGGATGGACGGTATGTCATAAatga
cttcttcCCTGGATTATTCGATCAATTCGAGCAGTATAAATAAAGAAACT
TCTAATTTAAAGAATCATTCAAAACTTCTGCAGTTAGGACTCAGTAACTC
GAAATTAGAGCAACCTTTGTTGAATGACTTCCTTCGTCGTTTGCACAGAT
CGAAATTACGACGCCTTTTGTATTGTGAATATAAAAGTGGAGGATTTATT
GTTACTGAACAAATACGAGGAGCAGTTGATAGTATTATCTCAACAGATAA
AGACAATTCATTGGACTCGAGATTAAAAAGTGTTCCTATGCATCAGGTAT
TTTTATGTAAATGTGGCTGGTTGCTTTTTAACCCATCTACATTACCATGC
GGACACACAATGTGCAAGCACTGTGCAGATGAGAATCTGTTTTGTATTTA
CTGTGGCCACACAATAGATGACGTTAGCTCTCCGAATTTATTTCTGGTTC
ATCTTCTCAGCACATGGTTCCCTGGTGAATATCAAAGTTCCCAACACAAG
CTTGATGCCAAGATATTACTGGCATCTGAAGATTACGAACTTGCTCTTAA
CGAAATCGATATTTGCATTTCAATACTTGATGATGATTATTCAGCATTTC
AATTACGATCAgaaatttatttgaaacttgaaaattataaaGACGCATTA
GTGGATGCAACTAAATCATGTGAACTAAACTCTGAATGTGGTAAATCTCA
GTTCATCAGAGGTAGTTGTTTTTCACATTTAGGCAAGTTAAATGAAGCAA
TTGACGCATTTCAGTTATGCTTAGAACTGGAACCAGAAGATATGGCATTA
TGTTCTCTGGTTATTAATAAACTTGATTCAATTCTGTCACTTCCGGATAC
TGGCTCTAAACTCTCAGATTCTGATTCTTCATCAGATGAAGGAGTGGGTG
GCAAGCGTTCAAAGTTAGATACATCAACTAATGAAAACACCGAACCGTCA
TGTCGCCACGCTAGTTCTAGTAGTTCAAATACATCATCCACCACACCTTC
AAATACACAGGCTAACAAATCTTACACTGATAAAATTGATGTCGAAAGAA
GGAAAAATGATTGTACTGAAGCTCATACACCAGATACAGACTACAAAAAT
GATTCAGCTACTAAAACAGAAAATTATGTGTCAAATGTCGAAGAGAAAAT
TCATGGTGTACCAAAAAAACTATTATCAGAAGAAGATTTCGAGTGTAAAT
TATGTTACGAATTACTGTTCAAACCTATTACCACTACGTGCGGTCATGTG
TTTTGCAAGAACTGTTTACTTAGAAGTCTAGATCATAATGTTACTTGCCC
TATATGTCGAGTCTCATTGGCTGGTTTTTTGAGTAACCCTTTGAAACCTG
TCACTAAGCTTATTGAAGATATTTTGAGTTTGTTTTTCACCGATGAATTT
GGTAAAAGAAGACAAGCGTACATGAGCCGTATGGAAAGGCTTGCAAGGGT
TGGCAAAGATGAGGAGGTTGAGATTCCGATATTTGTGTGTTCAATTGCTT
TTCCTTCGGTCAAATGTCCGTTACATATTTTCGAACCTAAATGTCGATTA
ATGATACGTGAATGCATCGAGTCCGGCTCCAGGAAGTTCGGGATGTGTGT
CCCTCAGGGTGACGATGGTTTNAGTCCGGCTCCAGGAAGTTTGGGATGTG
TGTCCCTCAGGGTGACGATGGTTTCTCTGAAATGGGTACGATATGCGAAA
TTACCAAGATACAAAATCTGCCGGATGGACGGTATGTCATAAatgacttc
ttcCCTGGATTATTCGATCAATTCGAGCAGTATAAATAAAGAAACTTCTA
ATTTAAAGAATCATTCAAAACTTCTGCAGTTAGGACTCAGTAACTCGAAA
TTAGAGCAACCTTTGTTGAATGACTTCCTTCGTCGTTTGCACAGATCGAA
ATTACGACGCCTTTTGTATTGTGAATATAAAAGTGGAGGATTTATTGTTA
CTGAACAAATACGAGGAGCAGTTGATAGTATTATCTCAACAGATAAAGAC
AATTCATTGGACTCGAGATTAAAAAGTGTTCCTATGCATCAGGTATTTTT
ATGTAAATGTGGCTGGTTGCTTTTTAACCCATCTACATTACCATGCGGAC
ACACAATGTGCAAGCACTGTGCAGATGAGAATCTGTTTTGTATTTACTGT
GGCCACACAATAGATGACGTTAGCTCTCCGAATTTATTTCTGGTTCATCT
TCTCAGCACATGGTTCCCTGGTGAATATCAAAGTTCCCAACACAAGCTTG
ATGCCAAGATATTACTGGCATCTGAAGATTACGAACTTGCTCTTAACGAA
ATCGATATTTGCATTTCAATACTTGATGATGATTATTCAGCATTTCAATT
ACGATCAgaaatttatttgaaacttgaaaattataaaGACGCATTAGTGG
ATGCAACTAAATCATGTGAACTAAACTCTGAATGTGGTAAATCTCAGTTC
ATCAGAGGTAGTTGTTTTTCACATTTAGGCAAGTTAAATGAAGCAATTGA
CGCATTTCAGTTATGCTTAGAACTGGAACCAGAAGATATGGCATTATGTT
CTCTGGTTATTAATAAACTTGATTCAATTCTGTCACTTCCGGATACTGGC
TCTAAACTCTCAGATTCTGATTCTTCATCAGATGAAGGAGTGGGTGGCAA
GCGTTCAAAGTTAGATACATCAACTAATGAAAACACCGAACCGTCATGTC
GCCACGCTAGTTCTAGTAGTTCAAATACATCATCCACCACACCTTCAAAT
ACACAGGCTAACAAATCTTACACTGATAAAATTGATGTCGAAAGAAGGAA
AAATGATTGTACTGAAGCTCATACACCAGATACAGACTACAAAAATGATT
CAGCTACTAAAACAGAAAATTATGTGTCAAATGTCGAAGAGAAAATTCAT
GGTGTACCAAAAAAACTATTATCAGAAGAAGATTTCGAGTGTAAATTATG
TTACGAATTACTGTTCAAACCTATTACCACTACGTGCGGTCATGTGTTTT
GCAAGAACTGTTTACTTAGAAGTCTAGATCATAATGTTACTTGCCCTATA
TGTCGAGTCTCATTGGCTGGTTTTTTGAGTAACCCTTTGAAACCTGTCAC
TAAGCTTATTGAAGATATTTTGAGTTTGTTTTTCACCGATGAATTTGGTA
AAAGAAGACAAGCGTACATGAGCCGTATGGAAAGGCTTGCAAGGGTTGGC
AAAGATGAGGAGGTTGAGATTCCGATATTTGTGTGTTCAATTGCTTTTCC
TTCGGTCAAATGTCCGTTACATATTTTCGAACCTAAATGTCGATTAATGA
TACGTGAATGCATCGAGTCCGGCTCCAGGAAGTTCGGGATGTGTGTCCCT
CAGGGTGACGATGGTTTNAGTCCGGCTCCAGGAAGTTTGGGATGTGTGTC
CCTCAGGGTGACGATGGTTTCTCTGAAATGGGTACGATATGCGAAATTAC
CAAGATACAAAATCTGCCGGATGGACGGTATGTCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015217XLOC_015217Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027072-proteinTCONS_00027072-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027072-exon-sc0000606-1491911889:3596..3721TCONS_00027072-exon-sc0000606-1491911889:3596..3721Clytia hemisphaericaexon
TCONS_00027072-exon-sc0000606-1510915933:3596..3721TCONS_00027072-exon-sc0000606-1510915933:3596..3721Clytia hemisphaericaexon
TCONS_00027072-exon-sc0000606-1575043694:3596..3721TCONS_00027072-exon-sc0000606-1575043694:3596..3721Clytia hemisphaericaexon
TCONS_00027072-exon-sc0000606-1491911889:8171..9723TCONS_00027072-exon-sc0000606-1491911889:8171..9723Clytia hemisphaericaexon
TCONS_00027072-exon-sc0000606-1510915933:8171..9723TCONS_00027072-exon-sc0000606-1510915933:8171..9723Clytia hemisphaericaexon
TCONS_00027072-exon-sc0000606-1575043694:8171..9723TCONS_00027072-exon-sc0000606-1575043694:8171..9723Clytia hemisphaericaexon
TCONS_00027072-exon-sc0000606-1491911889:9976..10213TCONS_00027072-exon-sc0000606-1491911889:9976..10213Clytia hemisphaericaexon
TCONS_00027072-exon-sc0000606-1510915933:9976..10213TCONS_00027072-exon-sc0000606-1510915933:9976..10213Clytia hemisphaericaexon
TCONS_00027072-exon-sc0000606-1575043694:9976..10213TCONS_00027072-exon-sc0000606-1575043694:9976..10213Clytia hemisphaericaexon
TCONS_00027072-exon-sc0000606-1491911889:10422..12752TCONS_00027072-exon-sc0000606-1491911889:10422..12752Clytia hemisphaericaexon
TCONS_00027072-exon-sc0000606-1510915933:10422..12752TCONS_00027072-exon-sc0000606-1510915933:10422..12752Clytia hemisphaericaexon
TCONS_00027072-exon-sc0000606-1575043694:10422..12752TCONS_00027072-exon-sc0000606-1575043694:10422..12752Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000606supercontigsc0000606:3596..12752 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
28.8923 24.4611 12.8468 8.49743 10.5253 7.22144 7.20701 7.82586 4.7579 6.25906 7.89034 4.10465 8.25897 7.49335 4.27684 10.4532 7.0687 9.87163 6.06429 8.74536 10.8319 16.8797 29.4953 25.1366 8.54717 9.65545 15.8587 14.8985 22.3076 22.4467
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR013026TPR-contain_dom
IPR011990TPR-like_helical_dom
IPR015947PUA-like_domain
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
BLAST of TCONS_00027072 vs. Swiss-Prot (Human)
Match: LONF3 (LON peptidase N-terminal domain and RING finger protein 3 OS=Homo sapiens GN=LONRF3 PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 4.694e-57
Identity = 142/460 (30.87%), Postives = 222/460 (48.26%), Query Frame = 1
Query:  532 FLC-KCGWLLFNPSTLPCGHTMCKHCADE----NLFCIYCGHTIDDV--------------SSP------NLFLVHLLSTWFPGEYQSSQHKLDAKILLASEDYELALNEIDICISILDDDYSAFQLRSEIYLKLENYKDALVDATKSCELNSECGKSQFIRGSCFSHLGKLNEAIDAFQLCLELEPED-MALCSLVINKLDSILSLPDTGSKLXXXXXXXXEGVGGKRSKLDTSTNENTEPSCRHAXXXXXXXXXXXXXXXQANKSYTDKIDVERRKNDCTEAHTPDTDYKNDSATKTENYVSNVEEKIHGVPKKLLSEEDFECKLCYELLFKPITTTCGHVFCKNCLLRSLDHNVTCPICRVSLAGFLSNPLKPVTKLIEDILSLFFTDEFGKRRQAYMSRMERLARVGKDEEVEIPIFVCSIAFPSVKCPLHIFEPKCRLMIRECIESGSRKFGMCV 1833
            F C KC   L +P +L CGHT CK C +     +  C  CG  +  +                P      N+ L  LL   FPG  ++SQ + +   L      E AL + +  + +  +D+  +  RS+IY  LE++++AL DA  +C+L     K+ F +    + LGK+ EA+  F  C+ L+ ++  A C    + L+    LP   S+        +    G  S L        +    H             ++ +A  S T K   ++RK+ C      +T   N  A+K +      ++    +P       D EC LC  L ++P+TT CGH FC  CL R LDHN  CP+C+  L+  L++       ++E++++ F  +E  +RR+ Y   ME L+ + K+    +PIFVC++A+P+V CPLHIFEP  RLMIR CIE+G+R+FGMC+
Sbjct:  156 FKCRKCHGFLSDPVSLSCGHTFCKLCLERGRAADRRCALCGVKLSALMVATGRARGARRAGQQPPPPLRVNVVLSGLLGKLFPGPARASQLRHEGNRLYRERQVEAALLKYNEAVKLAPNDHLLYSNRSQIYFTLESHENALHDAEIACKLRPMGFKAHFRKAQALATLGKVEEALREFLYCVSLDGKNKRARCEAQRDNLE----LPHCSSQ-------EEAAARGDGSSLMDPAKVKGDGQQHHMKDQEEEEEKWDATSPKAASSKTGKCQEKKRKH-CQIESQEETGMPN-KASKQDPPTDQGDKPALSLPLASFDASDLECALCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDGLSQCLASRKYSKNVIMEELIAKFLPEELKERRKLYEEEMEELSNLNKN----VPIFVCTMAYPTVPCPLHIFEPCYRLMIRRCIETGTRQFGMCL 598          

HSP 2 Score: 86.2705 bits (212), Expect = 8.136e-17
Identity = 48/151 (31.79%), Postives = 76/151 (50.33%), Query Frame = 3
Query: 1845 RWFXSGSRKFGMCVPQGDDGFSEMGTICEITKIQNLPDGRYVITATAGQRFIIQQKSVEDSIDYAKVKYFCDEP-EDLNNETFNAASRRAYDHLSQYITSLNESEQDCIINALGPIPQYESNFSHFQHGVPWIWWGLAALPLNFSAKLVLL 2294
            R   +G+R+FGMC+     GF+E G I EI  +Q   DGR V+ +   +RF +  +S  D  + A ++Y  D+  +  +           Y   S +  SL  S ++ I+N  GP+P+ +++     +G  W WW LA LPL   A+L  L
Sbjct:  585 RCIETGTRQFGMCLGDPVKGFAEYGCILEIRNVQFFADGRSVVDSIGKRRFRVLHQSQRDGYNTADIEYIEDQKVQGEDCAELMGLHNCVYQQASLWFHSLKLSLKNRILNHFGPMPEKDADPQMNPNGPAWCWWMLAVLPLESRAQLPFL 735          
The following BLAST results are available for this feature:
BLAST of TCONS_00027072 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LONF34.694e-5730.87LON peptidase N-terminal domain and RING finger pr... [more]
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