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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027072 ID=TCONS_00027072|Name=TCONS_00027072|organism=Clytia hemisphaerica|type=transcript|length=4248bp ATGAAATTGTTTAAGTTAAGTAACTTGACGCTTTTGCAGGTTTGATTGCA TAAGTCTGGCAAAGCGCAAGAGAAAAATCACGAAGCCTTGAAAAATACCT GGACAATCCTGACACATTTTGGATAGATACAAAGACAATGGGTACAATGA AATATATTAGtgaagaaaagtattgatatatgaCTATTACAATGTATAGC AGCTGGGAGACAATCTATTTccaatacaatgacttcttcCCTGGATTATT CGATCAATTCGAGCAGTATAAATAAAGAAACTTCTAATTTAAAGAATCAT TCAAAACTTCTGCAGTTAGGACTCAGTAACTCGAAATTAGAGCAACCTTT GTTGAATGACTTCCTTCGTCGTTTGCACAGATCGAAATTACGACGCCTTT TGTATTGTGAATATAAAAGTGGAGGATTTATTGTTACTGAACAAATACGA GGAGCAGTTGATAGTATTATCTCAACAGATAAAGACAATTCATTGGACTC GAGATTAAAAAGTGTTCCTATGCATCAGGTATTTTTATGTAAATGTGGCT GGTTGCTTTTTAACCCATCTACATTACCATGCGGACACACAATGTGCAAG CACTGTGCAGATGAGAATCTGTTTTGTATTTACTGTGGCCACACAATAGA TGACGTTAGCTCTCCGAATTTATTTCTGGTTCATCTTCTCAGCACATGGT TCCCTGGTGAATATCAAAGTTCCCAACACAAGCTTGATGCCAAGATATTA CTGGCATCTGAAGATTACGAACTTGCTCTTAACGAAATCGATATTTGCAT TTCAATACTTGATGATGATTATTCAGCATTTCAATTACGATCAgaaattt atttgaaacttgaaaattataaaGACGCATTAGTGGATGCAACTAAATCA TGTGAACTAAACTCTGAATGTGGTAAATCTCAGTTCATCAGAGGTAGTTG TTTTTCACATTTAGGCAAGTTAAATGAAGCAATTGACGCATTTCAGTTAT GCTTAGAACTGGAACCAGAAGATATGGCATTATGTTCTCTGGTTATTAAT AAACTTGATTCAATTCTGTCACTTCCGGATACTGGCTCTAAACTCTCAGA TTCTGATTCTTCATCAGATGAAGGAGTGGGTGGCAAGCGTTCAAAGTTAG ATACATCAACTAATGAAAACACCGAACCGTCATGTCGCCACGCTAGTTCT AGTAGTTCAAATACATCATCCACCACACCTTCAAATACACAGGCTAACAA ATCTTACACTGATAAAATTGATGTCGAAAGAAGGAAAAATGATTGTACTG AAGCTCATACACCAGATACAGACTACAAAAATGATTCAGCTACTAAAACA GAAAATTATGTGTCAAATGTCGAAGAGAAAATTCATGGTGTACCAAAAAA ACTATTATCAGAAGAAGATTTCGAGTGTAAATTATGTTACGAATTACTGT TCAAACCTATTACCACTACGTGCGGTCATGTGTTTTGCAAGAACTGTTTA CTTAGAAGTCTAGATCATAATGTTACTTGCCCTATATGTCGAGTCTCATT GGCTGGTTTTTTGAGTAACCCTTTGAAACCTGTCACTAAGCTTATTGAAG ATATTTTGAGTTTGTTTTTCACCGATGAATTTGGTAAAAGAAGACAAGCG TACATGAGCCGTATGGAAAGGCTTGCAAGGGTTGGCAAAGATGAGGAGGT TGAGATTCCGATATTTGTGTGTTCAATTGCTTTTCCTTCGGTCAAATGTC CGTTACATATTTTCGAACCTAAATGTCGATTAATGATACGTGAATGCATC GAGTCCGGCTCCAGGAAGTTCGGGATGTGTGTCCCTCAGGGTGACGATGG TTTNAGTCCGGCTCCAGGAAGTTTGGGATGTGTGTCCCTCAGGGTGACGA TGGTTTCTCTGAAATGGGTACGATATGCGAAATTACCAAGATACAAAATC TGCCGGATGGACGGTATGTCATAACAGCAACTGCCGGACAGCGCTTTATA ATCCAACAGAAAAGCGTTGAAGATTCTATTGACTAtgcaaaagtaaaata tttttgtgatgAGCCAGAAGATTTGAACAATGAAACGTTTAATGCTGCTT CGAGGCGTGCTTACGATCATTTATCACAGTACATTACGTCACTCAACGAA TCTGAGCAAGATTGTATTATAAATGCATTGGGACCAATACCTCAATATGA AAGTAATTTCTCACACTTTCAACACGGTGTACCTTGGATCTGGTGGGGTC TTGCTGCCTTACCTTTAAACTtttcagcaaaacttgttttgcTAAAGTCA AAATGTGCAAGCGAACGTATGTTGAGTTTGCAAAGATTCTTACGGTTTTT ATCTCGAATGCAATCGACGCCAAACGGTGGACAGCAAAATAACACACCGA TATCTCAACACAACTAAACTTATATATACTATTATACATTGCTTTGtagt ttttatataattttgtaCAGAATTAGTaatgtaattattttcaaatattc atcctttcttttttatctttaaaagaTATCACAAACATCACGCCTAAGGA TATCTTAATACAAAACACTAGATGAAGCTTCTATGTCCCtagctgaagca aaattttgccCATATTTGATAAAATGTCGCCAAAATTTCCTCGCATAAcc cttgaaatttagaaatcaTGACAGTGTCAAAATACTTGAGTATGTAAAAC CAAGATTTCTGCTGTGGTCTACTTTTATTAAAGATAGtgcattgtttttt cgcttCACCTGTCCTATCGAGAAATGCCGTGTTGTTTCTATTTTTTATGG AACTTTgatgtactctcgggtacctaataaccgGGATGGgtagaaaaatt ctcaaaacttaataagtggactggaataaaaatatcctgggtggaaaatt aatTATAATTGAAAAGTTACAAACAcaaattcgaaaattttgagaatgaT GAAATGTCAACTTTTATCTACTGACGTCGTTATAAATCTACGAAAATTTT AGTTTGGAAATAATTCTAGTATGATATGGTGCATCCTGTCAAAGTTTTAT GATTAACCATGAACAACATAtgcacccctgtgtcacagacccactgggac cccagccccactggaaaatttggcaaaaaaattatccccgatgggaaaat accctggaattgccgccccactgagaaattcggggaaatttactttgatt ttataCCCACTCGAAATCCAATGATTTAAAATTGCACtacaaaaccatcc ccactggattttttaaccttggaataatagaatttctatcctcgTTGGGc tttcaaaaataatatttatccccactgagCGAAAAACTTCCACCGGGGTT CTGAGATAGGGGTGTACATATGTTCAAGGATGAACCCTTTAACCTCaagc ttttaagatttttgcAGCCAAAGTGAAGTTAAACACAATGTTTTCACCTA GAAAAAAGTCAGTTGAAAACTCTGTAATTAGAGAAAAGTCAGTTGAAAAc tctcaaaaattatggtgaaaACTCTCTATACTAAAAATAAGCCAGTTGAA AACTCTCAAAAGTTATGGTGAAAACCCTCTtactcaacaaaaaaaattca acccaAGCGTACAGAGGCGTTATCATTGCGGGGGAGGCTACCAATACCTC TACCTCCCTTTGTAATTGCCGGCCATCCTGGATGGTACTGTCTGAAACGA TATACAAAACTTCAAATTTCGCTCTTGTCGTGCGTGTTTTTGTATATCAG GGTTTATAtgcaattggtttgttttggtcctAATCGGGACTCTTGATTTA GCCTCACTTTCATGCCCCTTTTAAGGCCTCAGATTTTCCATATGGgcctt tttcagtttttcagtgCAGACTGCTGTTTTTTACTCCGCCTCCCTCCCCA GCATCTTGGTGGAAGCTTTCCTAAGTCCAATTTTATTTAATGCTTAGGTC ACCgaatattctaatatttttcttagattttcttTATGTGAACCGTTTCT TTTAAGGTCTATACCATGTATTTGCCATTTGCTGGCTTGTTGATTCTATA TACCTATTATGTTTTTATTCTGTCGTTATTTACTATTTACTGTGCTCCTg taatcatttgttttattttcctagtttatattcctgtacatattttgtct gtgccgtTTTTCACAGTGTTTATTCCGTCAAGAGctgaaaataccatgta gaCATATCTGTGTGCTTTCTGCCTATCCTTGCTTTAGCCTTTTGTGTT Run BLAST on NCBI protein sequence of TCONS_00027072-protein >TCONS_00027072-protein ID=TCONS_00027072-protein|Name=TCONS_00027072-protein|organism=Clytia hemisphaerica|type=polypeptide|length=581bp
MTSSLDYSINSSSINKETSNLKNHSKLLQLGLSNSKLEQPLLNDFLRRLH RSKLRRLLYCEYKSGGFIVTEQIRGAVDSIISTDKDNSLDSRLKSVPMHQ VFLCKCGWLLFNPSTLPCGHTMCKHCADENLFCIYCGHTIDDVSSPNLFL VHLLSTWFPGEYQSSQHKLDAKILLASEDYELALNEIDICISILDDDYSA FQLRSEIYLKLENYKDALVDATKSCELNSECGKSQFIRGSCFSHLGKLNE AIDAFQLCLELEPEDMALCSLVINKLDSILSLPDTGSKLSDSDSSSDEGV GGKRSKLDTSTNENTEPSCRHASSSSSNTSSTTPSNTQANKSYTDKIDVE RRKNDCTEAHTPDTDYKNDSATKTENYVSNVEEKIHGVPKKLLSEEDFEC KLCYELLFKPITTTCGHVFCKNCLLRSLDHNVTCPICRVSLAGFLSNPLK PVTKLIEDILSLFFTDEFGKRRQAYMSRMERLARVGKDEEVEIPIFVCSI AFPSVKCPLHIFEPKCRLMIRECIESGSRKFGMCVPQGDDGXSPAPGSLG CVSLRVTMVSLKWVRYAKLPRYKICRMDGMS Run BLAST on NCBI transcript from alignment at sc0000606:3596..12752+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027072 ID=TCONS_00027072|Name=TCONS_00027072|organism=Clytia hemisphaerica|type=transcript|length=9157bp|location=Sequence derived from alignment at sc0000606:3596..12752+ (Clytia hemisphaerica) ATGAAATTGTTTAAGTTAAGTAACTTGACGCTTTTGCAGGTTTGATTGCA
TAAGTCTGGCAAAGCGCAAGAGAAAAATCACGAAGCCTTGAAAAATACCT
GGACAATCCTGACACATTTTGGATAGGTCTGTTGATTTCCAAGTGGCATA
TTTTATGAATCTTTTGTTCTAATCATCTGTATCTGTCTTGTTTGTTTGAT
GGAGAAATGTAATAACTGAAAGAAACGAAAATTTAGACTGTTAGAACATT
TGTTTATGAAAACCTTTGCTAACCAGTCTCATCGGAACTCTTCTCCTTGA
ACTGACACTGAATCTCTGGTTGGAAAGTTTCAACCATAAAAAGGTTGTTG
ATTTCTTAACCTATCGATTGTGTTTTTTACATGGCTTTATAAAACTCCCT
TGGCGCGCGCATTACTTGTGTAATGCCGAAATACCTTCCTGCCTCTTGTC
TTATTATTCTGTCATAGCCAATCTATATCTGGCCTTTCAAATATTTAAAG
ACCAATTCCGTGTGAAGTCAAGAAAGAATATGTACAGGATGATTTAGTAC
CACCTTGATAGCTCTTCAAATATTTCTCGTTCGGCGGACTTGCTAGGGGC
GCagtttttggtttgttttttttttcattgcctGGTGAAAAttatgtcag
ttaggaacaCATGTAGTTTGCTTGAGGTTAGCTTCAAGGTACCAGGTGAG
CTCTTCAAATATTTCTCGTTCGGCGGACCTGCTAGGGGAGCAGTttatgg
ttgtttttttttcattgttgaAAATTATGTCAGTTAGGAATATGTAGTTT
GCTTGAGGTTAGCTTAAAGGTACCGGGTACGCCACAAAAAACTCTCTTta
taaaaactaatttttccgaaatctgaaaattctaaaagaactatagaaag
ataaacttaaattttgatgggtcatttattaaattcggttcattagatca
aaagttaggctctatttaataaaaaagttactttttgaaagtgctcaaaa
acgttaaaaatcaacGTACagtatcaaattaaacagaagcataattacat
gatgcatcaTTATTTTCgattaagtcattaaaaatgatcgTTTGTTGTAG
AGTCAAGTTACCAGTGCGCGAATtgccccagtgcacgaacgaacatcttt
gaacttgaaaaaaacaaccaaaaacaaacttctatagaacttccttcgtg
cagcagaatcctcaaactatcCCTAGCAATctgtccaaaaattaaaataa
acggagcacttgaacaacaccaaaccgattttgaacgaggccaagtaaaa
aaattacaaaactctggatttttgtaaacatggctGATCGCAAgaggaaa
tgttttttataagaagatttgcgcaagaagagttctgaaaatgactttcc
tcttttaaaaacctgttaTCTTCCATCACATAAAATTTCATCGAAGCATG
TTAgctcattaattcaaaatcaatagaaacatatcaccagtagttgatat
aaaaaagggTCCAGTCCGCAAATGATCCAaacaccatattcaaaatgaag
acattgtaACGTCAAAACATTCCAAAGCTGGtgatctcaattaaaaaaga
agacactacattgccgCCATTTTCAATGaccaaaacttgaaaaagaaaac
aaaaatggacgacaagaaaatatttacaaaaataaacaggttagtaaAAG
GCTAaagctcttataaaaaatacgtttttttagtgaaaaagcgcgtggtt
tgaaaagttcaaatctGGGAAGAGAGTTTAAGTATTACCTGTGAGCGgag
ctctaattttttctttcaaaagatcgtaCGTTCCCGCTCTGGTTCCTCGT
TCGTGGACTGGGTCCGAATAGCGCTTGCTTTAGCAacttattattccaag
aagaagctttcaaataaattgaaaacaaactgaaagaaggacttcaagct
TGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNctctcgggtacctaatagccgggggg
gttggaataagcgggggggttggaaaaaatctcaaaacttaataagcggg
ggggttggaataaaaatgtcttgagtggaaaatttttgaaaaggaggcta
atacagctgaattaggacaaaaaagggaactttcaaaaacattttcccaa
aaattaataagcggggggggttggaataagaatgtcctgggtggaaaatt
ttcgaaaaattaattagcggggggacggctattaagtacccgagagtacg
agatggtcaaaaaggatttatgtaaaaaccaaaagtaagtgagaaaagtg
aaaaatgagttTGGCGTTAGTGCACTGGGCATCCCCCTCtataaaggaag
attgaatttcaataaaaggcagaaaatttgtcgaaaaaagctaaaaaaac
tggtaaaattcataattaTACACCAAATATGGGTTTCTAGAAGTGTGGCG
TAATTAGTTGTGCAATAGAACGTCACGTTCTCCTAACGGTctagacttaa
actcctatatcaggattagaaactaggctagtcttacctcttatGTTTGC
CTTTGCATCAATACTGTACAATGCCGACACAAGtcgacacaacacattga
caaataatccctgtgagaagtttatatcgaaatctgttGCAAAAACGAAT
GTGgcctcttctactgattgcttcatGGCGCTACCTTGCGGACTACTGTA
TTTATTTGATTTCCACCAATAAGATTGTCACACTTTACACAGCCCTTCTA
TTTGGCACCTGTGGTCTTTCAGTGCTATACCCAACAGGGGGCTGTAAAAT
CTCACCTTCCATACATAACACCTCTTTTATTTGATTCAATCCGTGATCTT
AAGGTGTAGCCTGTTTCTCATCTTTGATTCTCTGAAGAAAGCAGAAATTg
gatgcaagagttagattgttaaaacaaagtgccataaaaacTCATTGaat
taaaagaagaacttaaaatcttaaaatattttcattttgaagaattggtg
ccaaaaagtgaaacatagaaaagttttaatatttattgctttaaaagtga
aaatgagggatttggaaaattttttctagGTTTAGTTTTTTGTACAAATG
TAACTATGGacaagcaccccgttgctaagatgttagcttgaaattgaaat
gaaaccactgaaaactaAAGCAAAATCAGCCCGCACTCCctatcccgtaa
tcttgatatatcagtttaagtctatactgcctAAAGGAGTATTACACAAA
GTCATGGTAGGCATGGGACTCCAAGGTATAGCTGGAAACTTTTCATTGTG
TGCAGGTAGAACTTTTTCAAGGTCTATTTAGCTAGATCTTTTGCTTGATG
CAATACCATTCATTAGTATGGATGTCACCCCTAAATTATGCAGTCAAAAT
GGTATTGATTCTAGCTTTATTGATTATCTAGGACCTTCAGTTAGTCAAAT
AAACTAGGTCTATTGGATAACTTTTAAATAATGAAGTTGTCtaattgttt
tgtattttaaaacACAGTTGTTACCTAATGCTGTGTCTGTAACCCgccaa
agttttgtaaaaacaGTCTATATGGCAGTACACAGTCTAGGTGGTTGTCC
AGCCTAAACATCACTAACTGACTCCTGTAGAATTGCATAATCTTAGTGTC
AGGATAAACCTGATAGTGTATCAATTTACTAACTCAATTTTTCATCTTAA
TCATTTAATTAATGTCTGCTAGTTATGTTTTAATTTaccttttaaaaaca
ttttgatttcTTCAGTCCCTCTTTTTAAAGGTAAATAGTCTTTCTCTTTG
ACAGAGGTGAAAAAAATGGTTCCAGATGATGGCACCTATCTAAAAAACAA
ATATCTGATATAGGGAATTTACAATTGAAAGCCAGCCTTAGGGGATTAGC
TGTCACAGGATTAGAGTAACCTTATTAATATTACActtttatcggcgatc
caaaatatctgcaatctgattggttaaaaagagtacaatatttcttgtat
tttacatataaaaatataaattgacgaaaaataTGTTgctgcattgtagc
ggtagcagtaatctaacgtcactttgctataAAAATACCCTAcacttttt
tccaacacaaaaagtgcattacATATTACTAATCAAGTATGTATCTAACA
TGGAAAAATGAGTGGGACAATTTATCAATGGGAAAGGCGCGGTTTTTGAA
AATAACCTTAGTTCAAATTATGATTAGTGTTAGGTAAGCCATAAATTGTG
TTAAATAACTTGTATGAGTATTTATATGAATATCTAGcataataatattt
tcaagttaTTTAACGCAATTGGGTtatctaacgttaaatgaaaTTTGAGC
CAAGGTATATAAATGTAATAGGTAGGTTCCATAACTTCAAAAATttggtt
ttcattttttttcttggtTCTGTTGATTACTTTACCAGGCAGTTTCATAA
GTTATTATTTCTTTTCTCATTTTAGATACAAAGACAATGGGTACAATGAA
ATATATTAGtgaagaaaagtattgatatatgaCTATTACAATGTATAGCA
GCTGGGAGACAATCTATTTccaatacaatgacttcttcCCTGGATTATTC
GATCAATTCGAGCAGTATAAATAAAGAAACTTCTAATTTAAAGAATCATT
CAAAACTTCTGCAGTTAGGACTCAGTAACTCGAAATTAGAGCAACCTTTG
TTGAATGACTTCCTTCGTCGTTTGCACAGATCGAAATTACGACGCCTTTT
GTATTGTGAATATAAAAGTGGAGGATTTATTGTTACTGAACAAATACGAG
GAGCAGTTGATAGTATTATCTCAACAGATAAAGACAATTCATTGGACTCG
AGATTAAAAAGTGTTCCTATGCATCAGGTATTTTTATGTAAATGTGGCTG
GTTGCTTTTTAACCCATCTACATTACCATGCGGACACACAATGTGCAAGC
ACTGTGCAGATGAGAATCTGTTTTGTATTTACTGTGGCCACACAATAGAT
GACGTTAGCTCTCCGAATTTATTTCTGGTTCATCTTCTCAGCACATGGTT
CCCTGGTGAATATCAAAGTTCCCAACACAAGCTTGATGCCAAGATATTAC
TGGCATCTGAAGATTACGAACTTGCTCTTAACGAAATCGATATTTGCATT
TCAATACTTGATGATGATTATTCAGCATTTCAATTACGATCAgaaattta
tttgaaacttgaaaattataaaGACGCATTAGTGGATGCAACTAAATCAT
GTGAACTAAACTCTGAATGTGGTAAATCTCAGTTCATCAGAGGTAGTTGT
TTTTCACATTTAGGCAAGTTAAATGAAGCAATTGACGCATTTCAGTTATG
CTTAGAACTGGAACCAGAAGATATGGCATTATGTTCTCTGGTTATTAATA
AACTTGATTCAATTCTGTCACTTCCGGATACTGGCTCTAAACTCTCAGAT
TCTGATTCTTCATCAGATGAAGGAGTGGGTGGCAAGCGTTCAAAGTTAGA
TACATCAACTAATGAAAACACCGAACCGTCATGTCGCCACGCTAGTTCTA
GTAGTTCAAATACATCATCCACCACACCTTCAAATACACAGGCTAACAAA
TCTTACACTGATAAAATTGATGTCGAAAGAAGGAAAAATGATTGTACTGA
AGCTCATACACCAGATACAGACTACAAAAATGATTCAGCTACTAAAACAG
AAAATTATGTGTCAAATGTCGAAGAGAAAATTCATGGTGTACCAAAAAAA
CTATTATCAGAAGAAGATTTCGAGTGTAAATTATGTTACGAATTACTGTT
CAAACCTATTACCACTACGTGCGGTCATGTGTTTTGCAAGAACTGTTTAC
TTAGAAGTCTAGATCATAATGTTACTTGCCCTATATGTCGAGTCTCATTG
GCTGGTTTTTTGAGTAACCCTTTGAAACCTGTCACTAAGCTTATTGAAGA
TATTTTGAGTTTGTTTTTCACCGATGAATTTGGTAAAAGAAGACAAGCGT
ACATGAGCCGTATGGAAAGGCTTGCAAGGTAAGAACCTTAGTAGCCTTTA
TTTATTACTCCTATTACATCTTCTTTCGTTAATTCACTTCTGTTTTCTTA
TAAATCGTTTCAGGTCAGAGAGAAATCTATAAGAGATATATTTTTTACGT
AAGATTTTGCGATGAACATatgttttttatgtcaaatacaGAATTTCGAA
AGGCACTTGTCAGACTTTCTACTCATtaagttgttgttttttcctaATCG
TTTCAATATTGTTGTTGTTCTCTTTTGCAGGGTTGGCAAAGATGAGGAGG
TTGAGATTCCGATATTTGTGTGTTCAATTGCTTTTCCTTCGGTCAAATGT
CCGTTACATATTTTCGAACCTAAATGTCGATTAATGATACGTGAATGCAT
CGAGTCCGGCTCCAGGAAGTTCGGGATGTGTGTCCCTCAGGGTGACGATG
GTTTNAGTCCGGCTCCAGGAAGTTTGGGATGTGTGTCCCTCAGGGTGACG
ATGGTTTCTCTGAAATGGGTAAAAgcaagattttcattttctcaaTACGT
ACCACTATATTTTACAATGGATTgattcttagttttttttcacaagATTT
TAGTTTCAACTACAGTATGTCAAACAAAAGATCGTCTCgtaaatatctta
aaatttatcACACCATCCctttaataacttttttaatACCATTACTTATT
GAACTTTCTCTTCTTTTATTCTAAAGGTACGATATGCGAAATTACCAAGA
TACAAAATCTGCCGGATGGACGGTATGTCATAACAGCAACTGCCGGACAG
CGCTTTATAATCCAACAGAAAAGCGTTGAAGATTCTATTGACTAtgcaaa
agtaaaatatttttgtgatgAGCCAGAAGATTTGAACAATGAAACGTTTA
ATGCTGCTTCGAGGCGTGCTTACGATCATTTATCACAGTACATTACGTCA
CTCAACGAATCTGAGCAAGATTGTATTATAAATGCATTGGGACCAATACC
TCAATATGAAAGTAATTTCTCACACTTTCAACACGGTGTACCTTGGATCT
GGTGGGGTCTTGCTGCCTTACCTTTAAACTtttcagcaaaacttgttttg
cTAAAGTCAAAATGTGCAAGCGAACGTATGTTGAGTTTGCAAAGATTCTT
ACGGTTTTTATCTCGAATGCAATCGACGCCAAACGGTGGACAGCAAAATA
ACACACCGATATCTCAACACAACTAAACTTATATATACTATTATACATTG
CTTTGtagtttttatataattttgtaCAGAATTAGTaatgtaattatttt
caaatattcatcctttcttttttatctttaaaagaTATCACAAACATCAC
GCCTAAGGATATCTTAATACAAAACACTAGATGAAGCTTCTATGTCCCta
gctgaagcaaaattttgccCATATTTGATAAAATGTCGCCAAAATTTCCT
CGCATAAcccttgaaatttagaaatcaTGACAGTGTCAAAATACTTGAGT
ATGTAAAACCAAGATTTCTGCTGTGGTCTACTTTTATTAAAGATAGtgca
ttgttttttcgcttCACCTGTCCTATCGAGAAATGCCGTGTTGTTTCTAT
TTTTTATGGAACTTTgatgtactctcgggtacctaataaccgGGATGGgt
agaaaaattctcaaaacttaataagtggactggaataaaaatatcctggg
tggaaaattaatTATAATTGAAAAGTTACAAACAcaaattcgaaaatttt
gagaatgaTGAAATGTCAACTTTTATCTACTGACGTCGTTATAAATCTAC
GAAAATTTTAGTTTGGAAATAATTCTAGTATGATATGGTGCATCCTGTCA
AAGTTTTATGATTAACCATGAACAACATAtgcacccctgtgtcacagacc
cactgggaccccagccccactggaaaatttggcaaaaaaattatccccga
tgggaaaataccctggaattgccgccccactgagaaattcggggaaattt
actttgattttataCCCACTCGAAATCCAATGATTTAAAATTGCACtaca
aaaccatccccactggattttttaaccttggaataatagaatttctatcc
tcgTTGGGctttcaaaaataatatttatccccactgagCGAAAAACTTCC
ACCGGGGTTCTGAGATAGGGGTGTACATATGTTCAAGGATGAACCCTTTA
ACCTCaagcttttaagatttttgcAGCCAAAGTGAAGTTAAACACAATGT
TTTCACCTAGAAAAAAGTCAGTTGAAAACTCTGTAATTAGAGAAAAGTCA
GTTGAAAActctcaaaaattatggtgaaaACTCTCTATACTAAAAATAAG
CCAGTTGAAAACTCTCAAAAGTTATGGTGAAAACCCTCTtactcaacaaa
aaaaattcaacccaAGCGTACAGAGGCGTTATCATTGCGGGGGAGGCTAC
CAATACCTCTACCTCCCTTTGTAATTGCCGGCCATCCTGGATGGTACTGT
CTGAAACGATATACAAAACTTCAAATTTCGCTCTTGTCGTGCGTGTTTTT
GTATATCAGGGTTTATAtgcaattggtttgttttggtcctAATCGGGACT
CTTGATTTAGCCTCACTTTCATGCCCCTTTTAAGGCCTCAGATTTTCCAT
ATGGgcctttttcagtttttcagtgCAGACTGCTGTTTTTTACTCCGCCT
CCCTCCCCAGCATCTTGGTGGAAGCTTTCCTAAGTCCAATTTTATTTAAT
GCTTAGGTCACCgaatattctaatatttttcttagattttcttTATGTGA
ACCGTTTCTTTTAAGGTCTATACCATGTATTTGCCATTTGCTGGCTTGTT
GATTCTATATACCTATTATGTTTTTATTCTGTCGTTATTTACTATTTACT
GTGCTCCTgtaatcatttgttttattttcctagtttatattcctgtacat
attttgtctgtgccgtTTTTCACAGTGTTTATTCCGTCAAGAGctgaaaa
taccatgtagaCATATCTGTGTGCTTTCTGCCTATCCTTGCTTTAGCCTT
TTGTGTT Coding sequence (CDS) from alignment at sc0000606:3596..12752+ >TCONS_00027072 ID=TCONS_00027072|Name=TCONS_00027072|organism=Clytia hemisphaerica|type=CDS|length=5238bp|location=Sequence derived from alignment at sc0000606:3596..12752+ (Clytia hemisphaerica) atgacttcttcCCTGGATTATTCGATCAATTCGAGCAGTATAAATAAAGA AACTTCTAATTTAAAGAATCATTCAAAACTTCTGCAGTTAGGACTCAGTA ACTCGAAATTAGAGCAACCTTTGTTGAATGACTTCCTTCGTCGTTTGCAC AGATCGAAATTACGACGCCTTTTGTATTGTGAATATAAAAGTGGAGGATT TATTGTTACTGAACAAATACGAGGAGCAGTTGATAGTATTATCTCAACAG ATAAAGACAATTCATTGGACTCGAGATTAAAAAGTGTTCCTATGCATCAG GTATTTTTATGTAAATGTGGCTGGTTGCTTTTTAACCCATCTACATTACC ATGCGGACACACAATGTGCAAGCACTGTGCAGATGAGAATCTGTTTTGTA TTTACTGTGGCCACACAATAGATGACGTTAGCTCTCCGAATTTATTTCTG GTTCATCTTCTCAGCACATGGTTCCCTGGTGAATATCAAAGTTCCCAACA CAAGCTTGATGCCAAGATATTACTGGCATCTGAAGATTACGAACTTGCTC TTAACGAAATCGATATTTGCATTTCAATACTTGATGATGATTATTCAGCA TTTCAATTACGATCAgaaatttatttgaaacttgaaaattataaaGACGC ATTAGTGGATGCAACTAAATCATGTGAACTAAACTCTGAATGTGGTAAAT CTCAGTTCATCAGAGGTAGTTGTTTTTCACATTTAGGCAAGTTAAATGAA GCAATTGACGCATTTCAGTTATGCTTAGAACTGGAACCAGAAGATATGGC ATTATGTTCTCTGGTTATTAATAAACTTGATTCAATTCTGTCACTTCCGG ATACTGGCTCTAAACTCTCAGATTCTGATTCTTCATCAGATGAAGGAGTG GGTGGCAAGCGTTCAAAGTTAGATACATCAACTAATGAAAACACCGAACC GTCATGTCGCCACGCTAGTTCTAGTAGTTCAAATACATCATCCACCACAC CTTCAAATACACAGGCTAACAAATCTTACACTGATAAAATTGATGTCGAA AGAAGGAAAAATGATTGTACTGAAGCTCATACACCAGATACAGACTACAA AAATGATTCAGCTACTAAAACAGAAAATTATGTGTCAAATGTCGAAGAGA AAATTCATGGTGTACCAAAAAAACTATTATCAGAAGAAGATTTCGAGTGT AAATTATGTTACGAATTACTGTTCAAACCTATTACCACTACGTGCGGTCA TGTGTTTTGCAAGAACTGTTTACTTAGAAGTCTAGATCATAATGTTACTT GCCCTATATGTCGAGTCTCATTGGCTGGTTTTTTGAGTAACCCTTTGAAA CCTGTCACTAAGCTTATTGAAGATATTTTGAGTTTGTTTTTCACCGATGA ATTTGGTAAAAGAAGACAAGCGTACATGAGCCGTATGGAAAGGCTTGCAA GGGTTGGCAAAGATGAGGAGGTTGAGATTCCGATATTTGTGTGTTCAATT GCTTTTCCTTCGGTCAAATGTCCGTTACATATTTTCGAACCTAAATGTCG ATTAATGATACGTGAATGCATCGAGTCCGGCTCCAGGAAGTTCGGGATGT GTGTCCCTCAGGGTGACGATGGTTTNAGTCCGGCTCCAGGAAGTTTGGGA TGTGTGTCCCTCAGGGTGACGATGGTTTCTCTGAAATGGGTACGATATGC GAAATTACCAAGATACAAAATCTGCCGGATGGACGGTATGTCATAAatga cttcttcCCTGGATTATTCGATCAATTCGAGCAGTATAAATAAAGAAACT TCTAATTTAAAGAATCATTCAAAACTTCTGCAGTTAGGACTCAGTAACTC GAAATTAGAGCAACCTTTGTTGAATGACTTCCTTCGTCGTTTGCACAGAT CGAAATTACGACGCCTTTTGTATTGTGAATATAAAAGTGGAGGATTTATT GTTACTGAACAAATACGAGGAGCAGTTGATAGTATTATCTCAACAGATAA AGACAATTCATTGGACTCGAGATTAAAAAGTGTTCCTATGCATCAGGTAT TTTTATGTAAATGTGGCTGGTTGCTTTTTAACCCATCTACATTACCATGC GGACACACAATGTGCAAGCACTGTGCAGATGAGAATCTGTTTTGTATTTA CTGTGGCCACACAATAGATGACGTTAGCTCTCCGAATTTATTTCTGGTTC ATCTTCTCAGCACATGGTTCCCTGGTGAATATCAAAGTTCCCAACACAAG CTTGATGCCAAGATATTACTGGCATCTGAAGATTACGAACTTGCTCTTAA CGAAATCGATATTTGCATTTCAATACTTGATGATGATTATTCAGCATTTC AATTACGATCAgaaatttatttgaaacttgaaaattataaaGACGCATTA GTGGATGCAACTAAATCATGTGAACTAAACTCTGAATGTGGTAAATCTCA GTTCATCAGAGGTAGTTGTTTTTCACATTTAGGCAAGTTAAATGAAGCAA TTGACGCATTTCAGTTATGCTTAGAACTGGAACCAGAAGATATGGCATTA TGTTCTCTGGTTATTAATAAACTTGATTCAATTCTGTCACTTCCGGATAC TGGCTCTAAACTCTCAGATTCTGATTCTTCATCAGATGAAGGAGTGGGTG GCAAGCGTTCAAAGTTAGATACATCAACTAATGAAAACACCGAACCGTCA TGTCGCCACGCTAGTTCTAGTAGTTCAAATACATCATCCACCACACCTTC AAATACACAGGCTAACAAATCTTACACTGATAAAATTGATGTCGAAAGAA GGAAAAATGATTGTACTGAAGCTCATACACCAGATACAGACTACAAAAAT GATTCAGCTACTAAAACAGAAAATTATGTGTCAAATGTCGAAGAGAAAAT TCATGGTGTACCAAAAAAACTATTATCAGAAGAAGATTTCGAGTGTAAAT TATGTTACGAATTACTGTTCAAACCTATTACCACTACGTGCGGTCATGTG TTTTGCAAGAACTGTTTACTTAGAAGTCTAGATCATAATGTTACTTGCCC TATATGTCGAGTCTCATTGGCTGGTTTTTTGAGTAACCCTTTGAAACCTG TCACTAAGCTTATTGAAGATATTTTGAGTTTGTTTTTCACCGATGAATTT GGTAAAAGAAGACAAGCGTACATGAGCCGTATGGAAAGGCTTGCAAGGGT TGGCAAAGATGAGGAGGTTGAGATTCCGATATTTGTGTGTTCAATTGCTT TTCCTTCGGTCAAATGTCCGTTACATATTTTCGAACCTAAATGTCGATTA ATGATACGTGAATGCATCGAGTCCGGCTCCAGGAAGTTCGGGATGTGTGT CCCTCAGGGTGACGATGGTTTNAGTCCGGCTCCAGGAAGTTTGGGATGTG TGTCCCTCAGGGTGACGATGGTTTCTCTGAAATGGGTACGATATGCGAAA TTACCAAGATACAAAATCTGCCGGATGGACGGTATGTCATAAatgacttc ttcCCTGGATTATTCGATCAATTCGAGCAGTATAAATAAAGAAACTTCTA ATTTAAAGAATCATTCAAAACTTCTGCAGTTAGGACTCAGTAACTCGAAA TTAGAGCAACCTTTGTTGAATGACTTCCTTCGTCGTTTGCACAGATCGAA ATTACGACGCCTTTTGTATTGTGAATATAAAAGTGGAGGATTTATTGTTA CTGAACAAATACGAGGAGCAGTTGATAGTATTATCTCAACAGATAAAGAC AATTCATTGGACTCGAGATTAAAAAGTGTTCCTATGCATCAGGTATTTTT ATGTAAATGTGGCTGGTTGCTTTTTAACCCATCTACATTACCATGCGGAC ACACAATGTGCAAGCACTGTGCAGATGAGAATCTGTTTTGTATTTACTGT GGCCACACAATAGATGACGTTAGCTCTCCGAATTTATTTCTGGTTCATCT TCTCAGCACATGGTTCCCTGGTGAATATCAAAGTTCCCAACACAAGCTTG ATGCCAAGATATTACTGGCATCTGAAGATTACGAACTTGCTCTTAACGAA ATCGATATTTGCATTTCAATACTTGATGATGATTATTCAGCATTTCAATT ACGATCAgaaatttatttgaaacttgaaaattataaaGACGCATTAGTGG ATGCAACTAAATCATGTGAACTAAACTCTGAATGTGGTAAATCTCAGTTC ATCAGAGGTAGTTGTTTTTCACATTTAGGCAAGTTAAATGAAGCAATTGA CGCATTTCAGTTATGCTTAGAACTGGAACCAGAAGATATGGCATTATGTT CTCTGGTTATTAATAAACTTGATTCAATTCTGTCACTTCCGGATACTGGC TCTAAACTCTCAGATTCTGATTCTTCATCAGATGAAGGAGTGGGTGGCAA GCGTTCAAAGTTAGATACATCAACTAATGAAAACACCGAACCGTCATGTC GCCACGCTAGTTCTAGTAGTTCAAATACATCATCCACCACACCTTCAAAT ACACAGGCTAACAAATCTTACACTGATAAAATTGATGTCGAAAGAAGGAA AAATGATTGTACTGAAGCTCATACACCAGATACAGACTACAAAAATGATT CAGCTACTAAAACAGAAAATTATGTGTCAAATGTCGAAGAGAAAATTCAT GGTGTACCAAAAAAACTATTATCAGAAGAAGATTTCGAGTGTAAATTATG TTACGAATTACTGTTCAAACCTATTACCACTACGTGCGGTCATGTGTTTT GCAAGAACTGTTTACTTAGAAGTCTAGATCATAATGTTACTTGCCCTATA TGTCGAGTCTCATTGGCTGGTTTTTTGAGTAACCCTTTGAAACCTGTCAC TAAGCTTATTGAAGATATTTTGAGTTTGTTTTTCACCGATGAATTTGGTA AAAGAAGACAAGCGTACATGAGCCGTATGGAAAGGCTTGCAAGGGTTGGC AAAGATGAGGAGGTTGAGATTCCGATATTTGTGTGTTCAATTGCTTTTCC TTCGGTCAAATGTCCGTTACATATTTTCGAACCTAAATGTCGATTAATGA TACGTGAATGCATCGAGTCCGGCTCCAGGAAGTTCGGGATGTGTGTCCCT CAGGGTGACGATGGTTTNAGTCCGGCTCCAGGAAGTTTGGGATGTGTGTC CCTCAGGGTGACGATGGTTTCTCTGAAATGGGTACGATATGCGAAATTAC CAAGATACAAAATCTGCCGGATGGACGGTATGTCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00027072-exon-sc0000606-1491911889:3596..3721 | TCONS_00027072-exon-sc0000606-1491911889:3596..3721 | Clytia hemisphaerica | exon |
| TCONS_00027072-exon-sc0000606-1510915933:3596..3721 | TCONS_00027072-exon-sc0000606-1510915933:3596..3721 | Clytia hemisphaerica | exon |
| TCONS_00027072-exon-sc0000606-1575043694:3596..3721 | TCONS_00027072-exon-sc0000606-1575043694:3596..3721 | Clytia hemisphaerica | exon |
| TCONS_00027072-exon-sc0000606-1491911889:8171..9723 | TCONS_00027072-exon-sc0000606-1491911889:8171..9723 | Clytia hemisphaerica | exon |
| TCONS_00027072-exon-sc0000606-1510915933:8171..9723 | TCONS_00027072-exon-sc0000606-1510915933:8171..9723 | Clytia hemisphaerica | exon |
| TCONS_00027072-exon-sc0000606-1575043694:8171..9723 | TCONS_00027072-exon-sc0000606-1575043694:8171..9723 | Clytia hemisphaerica | exon |
| TCONS_00027072-exon-sc0000606-1491911889:9976..10213 | TCONS_00027072-exon-sc0000606-1491911889:9976..10213 | Clytia hemisphaerica | exon |
| TCONS_00027072-exon-sc0000606-1510915933:9976..10213 | TCONS_00027072-exon-sc0000606-1510915933:9976..10213 | Clytia hemisphaerica | exon |
| TCONS_00027072-exon-sc0000606-1575043694:9976..10213 | TCONS_00027072-exon-sc0000606-1575043694:9976..10213 | Clytia hemisphaerica | exon |
| TCONS_00027072-exon-sc0000606-1491911889:10422..12752 | TCONS_00027072-exon-sc0000606-1491911889:10422..12752 | Clytia hemisphaerica | exon |
| TCONS_00027072-exon-sc0000606-1510915933:10422..12752 | TCONS_00027072-exon-sc0000606-1510915933:10422..12752 | Clytia hemisphaerica | exon |
| TCONS_00027072-exon-sc0000606-1575043694:10422..12752 | TCONS_00027072-exon-sc0000606-1575043694:10422..12752 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0000606 | supercontig | sc0000606:3596..12752 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00027072 vs. Swiss-Prot (Human)
Match: LONF3 (LON peptidase N-terminal domain and RING finger protein 3 OS=Homo sapiens GN=LONRF3 PE=1 SV=1) HSP 1 Score: 213.772 bits (543), Expect = 4.694e-57 Identity = 142/460 (30.87%), Postives = 222/460 (48.26%), Query Frame = 1
Query: 532 FLC-KCGWLLFNPSTLPCGHTMCKHCADE----NLFCIYCGHTIDDV--------------SSP------NLFLVHLLSTWFPGEYQSSQHKLDAKILLASEDYELALNEIDICISILDDDYSAFQLRSEIYLKLENYKDALVDATKSCELNSECGKSQFIRGSCFSHLGKLNEAIDAFQLCLELEPED-MALCSLVINKLDSILSLPDTGSKLXXXXXXXXEGVGGKRSKLDTSTNENTEPSCRHAXXXXXXXXXXXXXXXQANKSYTDKIDVERRKNDCTEAHTPDTDYKNDSATKTENYVSNVEEKIHGVPKKLLSEEDFECKLCYELLFKPITTTCGHVFCKNCLLRSLDHNVTCPICRVSLAGFLSNPLKPVTKLIEDILSLFFTDEFGKRRQAYMSRMERLARVGKDEEVEIPIFVCSIAFPSVKCPLHIFEPKCRLMIRECIESGSRKFGMCV 1833
F C KC L +P +L CGHT CK C + + C CG + + P N+ L LL FPG ++SQ + + L E AL + + + + +D+ + RS+IY LE++++AL DA +C+L K+ F + + LGK+ EA+ F C+ L+ ++ A C + L+ LP S+ + G S L + H ++ +A S T K ++RK+ C +T N A+K + ++ +P D EC LC L ++P+TT CGH FC CL R LDHN CP+C+ L+ L++ ++E++++ F +E +RR+ Y ME L+ + K+ +PIFVC++A+P+V CPLHIFEP RLMIR CIE+G+R+FGMC+
Sbjct: 156 FKCRKCHGFLSDPVSLSCGHTFCKLCLERGRAADRRCALCGVKLSALMVATGRARGARRAGQQPPPPLRVNVVLSGLLGKLFPGPARASQLRHEGNRLYRERQVEAALLKYNEAVKLAPNDHLLYSNRSQIYFTLESHENALHDAEIACKLRPMGFKAHFRKAQALATLGKVEEALREFLYCVSLDGKNKRARCEAQRDNLE----LPHCSSQ-------EEAAARGDGSSLMDPAKVKGDGQQHHMKDQEEEEEKWDATSPKAASSKTGKCQEKKRKH-CQIESQEETGMPN-KASKQDPPTDQGDKPALSLPLASFDASDLECALCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDGLSQCLASRKYSKNVIMEELIAKFLPEELKERRKLYEEEMEELSNLNKN----VPIFVCTMAYPTVPCPLHIFEPCYRLMIRRCIETGTRQFGMCL 598 HSP 2 Score: 86.2705 bits (212), Expect = 8.136e-17 Identity = 48/151 (31.79%), Postives = 76/151 (50.33%), Query Frame = 3
Query: 1845 RWFXSGSRKFGMCVPQGDDGFSEMGTICEITKIQNLPDGRYVITATAGQRFIIQQKSVEDSIDYAKVKYFCDEP-EDLNNETFNAASRRAYDHLSQYITSLNESEQDCIINALGPIPQYESNFSHFQHGVPWIWWGLAALPLNFSAKLVLL 2294
R +G+R+FGMC+ GF+E G I EI +Q DGR V+ + +RF + +S D + A ++Y D+ + + Y S + SL S ++ I+N GP+P+ +++ +G W WW LA LPL A+L L
Sbjct: 585 RCIETGTRQFGMCLGDPVKGFAEYGCILEIRNVQFFADGRSVVDSIGKRRFRVLHQSQRDGYNTADIEYIEDQKVQGEDCAELMGLHNCVYQQASLWFHSLKLSLKNRILNHFGPMPEKDADPQMNPNGPAWCWWMLAVLPLESRAQLPFL 735
The following BLAST results are available for this feature:
|