TCONS_00027054 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027054
Unique NameTCONS_00027054
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length458

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027054 ID=TCONS_00027054|Name=TCONS_00027054|organism=Clytia hemisphaerica|type=transcript|length=458bp
TCTTTTAGCACCATCGACAGATAGCTTGAAAGCCACACCTTCTCCTTCTC
CTACCACCACTACCACAACAAAGAAGCCAACAACCTTTCATTCTAGCTCT
GAAACCACACTCCCAAACACTAAAGACGACAGTCCGAAAAATGATCTAGA
AACGATAGATTCGTTAGCTCAAGACTTGAACAAGAGAAGAAGGTCTATTT
ATAAAAANCTTTAAATGACTCTGGCACCCTTTATAAATAATCTTTATCAA
GAAAAGTCAAACGGCGAAACTAACTATATggtataccgtattacttcgaa
taaacgtcccgggcgtttattatttttttgggtgtttaatgaaaattttt
tctttaatggGGGCGTTAATTCGAGTAAGTTAAGCAAAGTAATACGGTAA
ATGGGTTATAATTATATATCAGTCGAAGTAATGCCACAGTGTTGAAATTA
TAACTTTT
Run BLAST on NCBI

transcript from alignment at sc0000601:189866..190323

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027054 ID=TCONS_00027054|Name=TCONS_00027054|organism=Clytia hemisphaerica|type=transcript|length=458bp|location=Sequence derived from alignment at sc0000601:189866..190323 (Clytia hemisphaerica)
AAAAGTTATAATTTCAACACTGTGGCATTACTTCGACTGATATATAATTA
TAACCCATTTACCGTATTACTTTGCTTAACTTACTCGAATTAACGCCCcc
attaaagaaaaaattttcattaaacacccaaaaaaataataaacgcccgg
gacgtttattcgaagtaatacggtataccATATAGTTAGTTTCGCCGTTT
GACTTTTCTTGATAAAGATTATTTATAAAGGGTGCCAGAGTCATTTAAAG
NTTTTTATAAATAGACCTTCTTCTCTTGTTCAAGTCTTGAGCTAACGAAT
CTATCGTTTCTAGATCATTTTTCGGACTGTCGTCTTTAGTGTTTGGGAGT
GTGGTTTCAGAGCTAGAATGAAAGGTTGTTGGCTTCTTTGTTGTGGTAGT
GGTGGTAGGAGAAGGAGAAGGTGTGGCTTTCAAGCTATCTGTCGATGGTG
CTAAAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015201XLOC_015201Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027054-exon-sc0000601-1491911889:189866..190323TCONS_00027054-exon-sc0000601-1491911889:189866..190323Clytia hemisphaericaexon
TCONS_00027054-exon-sc0000601-1510915933:189866..190323TCONS_00027054-exon-sc0000601-1510915933:189866..190323Clytia hemisphaericaexon
TCONS_00027054-exon-sc0000601-1575043694:189866..190323TCONS_00027054-exon-sc0000601-1575043694:189866..190323Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000601supercontigsc0000601:189866..190323 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.79942	9.2093	4.8226	3.10948	0	0	0	0.171492	5.06373	5.1398	12.0073	4.60732	6.46898	3.10345	3.57081	5.82799	5.9315	6.28685	5.58848	6.46029	6.49182	5.38443	13.6404	13.4089	0.458926	0	4.48989	5.10694	7.48916	7.7527
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027054 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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