TCONS_00027040 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027040
Unique NameTCONS_00027040
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2165

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027040 ID=TCONS_00027040|Name=TCONS_00027040|organism=Clytia hemisphaerica|type=transcript|length=2165bp
AGATAAGGGACAGTTTGGTGTTGTGAATAAAGGGACCTACGAAAAAAAGA
CTGTCGCTGTTAAAGTTATGGAATCCCATGTAACACAGGAACAATATTTG
AAGGAGGCGAAGCTAAATAAGCTAGCTTCAGAGTCATGTGAGAACATAGC
TTCATTTTTGGGCATCTCATATACATCGACGTACGCTATTATGCAAGAGT
TCTGTTCCTTCAAGTTTTCAATAATATGCTCTCTCCAAGAAGAAGTATCT
TCGCTTCAAAAACTCGTCAAAACAATCGACCAtaactttgatttcaaaga
atttgaacattttgctttcaaaattgTGAAAGATGTCGCAAATGGACTTT
CACATTTACACAGTCTTGGTATAGCACATCGAGATTTGAAGCCAGCCAAT
ATTCTAGTGTCCAACCAGCATTTCCATGAATCTAAGTTTGGTGAACCAGA
ATGGTATTCAAACCCTTTAGTCTGTAAATTAACTGATTTTGGAGAAAGTC
GTTCAACAGTTGTCCATACCAGAGCAATGCTTATGAATGAAACGGTCCGA
AAATCGACCGTCAATGATTTTAATCGTGGAACATTTTTCTACAACGCACC
TGAAATTACAGTACCAAGCAAAAGACCACAAGCCTTCACACAAGCGATGC
TTGAAAAAGCTGACGTTTGGTCGTTTGGTATGGTTATTTTTTCAGTCTTG
AATGCGGATTATGGTGGTATTCCATATCaagaaaacatcaaaaacgCCTT
AAAAGACAGACCAGAAATGATCGTTAAAGAACAAGTAATCGAATTAATGA
GAAATGAGATTCCGCCAACATGGAGCAAGAAGTATGCACACCTACACAAT
GCTCAATGGAGAGATCtggtgaaaattcaaaaaagttgcGCTGTTCATTT
TGGAGAACGCCCAACTATGGTGGAAGTTTTGCATAGTCTCGGAAAACAGG
AGCCAGAAAGTGATTGTTGGGCTTGTTTCAAGAATTCATCTTTAAATGAA
ATTGTTAGaaaaattgagatCATCAGTCTTCCGATAAGTCAAAACTCGGC
GATGGAACACTATAATGAAGAGCAGGCACTTGCGTTCGAAAATACTGGGC
TTCTCAGTGACCAACCACTAGAAAACGATGGTAGTAATGGTTGTACTTAT
CTTTGCCTGAAGATTGTTCAAAATTTGCTAAAAGAAGAATACACAGGAGA
AAAATTGGAAGAAATGGTAGCAAAGGTTATATGGACCTATCCAGCTATTC
TAAACAATTTTCGAAGCTTTTCCAGCATGTCTCCGATGGATGCATACAAA
GTTATGGTAGCTAATGATAAGAACTTCATTAAGATGAATTTCGAATATGT
GGTTGGAAGTTATCGCGCTCTTACAGATTCGGGAAAGGCAGATCTACATG
AAAAacttaactcactaaaagaagATTTTGTATCTGTTTTTGTTTGCCTT
CCTTACACAGTTGTGATATTTCGCTCAAAAGGAAAGCTACATCTTATTGA
CACACACTCAATTCCTGAAAAGTCGGGGGGAACTGGTACCGGGGTCATTG
TATCGTCGGAGACAGCACAAGATCTTTGTAATTGGTTACATCTCCGTTTG
GAAAACACAGAAATGGAAGTCAATACTCCACAATCATTGATTCTTCTAAA
AGAAAACACCGATGACATCCATTTCGATCTCAATATGGTGGATGACGATC
AACCTGTTATCAAAATTAGAGAACCAACGGGAAATTTGTCTAAAGCAGCA
GAGCCAGCTTCTTCGAAATCAAACGAAGCACATAAAACAAGAAACCCGTC
TAGAGTGGAAAAGAACTTTGTAAATCTGACTGAAGATCCGGATTCCTCGA
ATTCAAGCAAAGCAGAGAAGACTAAAAATTCTTCTAGTGATAGATCACCC
TTGGTAAATACGTTTAAAGAATCTGAGTCAACTTCTTCAAAACCGAACGA
GACAGAAAAACAAGGAGAATTCTCAGGAAAAAAGCCGTCAAGAAAAAAAA
GACCCTCTaaaaatctatCCAAAACAGCTGGACCAAGCTCTTCCAAATCA
AAGAAACCAAGACACCCGTCTAGTGATAGGACAAACTTTGTAAATCTGAC
TGAAGATCCAATTTCCTCGAATTCAAGCAAAGCAGAGAAGACTAAAAATT
CGTCTAGTGATAGAA
Run BLAST on NCBI

transcript from alignment at sc0000601:10420..16202-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027040 ID=TCONS_00027040|Name=TCONS_00027040|organism=Clytia hemisphaerica|type=transcript|length=5783bp|location=Sequence derived from alignment at sc0000601:10420..16202- (Clytia hemisphaerica)
AGATAAGGGACAGTTTGGTGTTGTGAATAAAGGGACCTACGAAAAAAAGA
CTGTCGCTGTTAAAGTTATGGAATCCCATGTAACACAGGAACAATATTTG
AAGGAGGCGAAGCTAAATAAGCTAGCTTCAGAGTCATGTGAGAACATAGC
TTCATTTTTGGGCATCTCATATACATCGACGTACGCTATTATGCAAGAGT
TCTGTTCCTTCAAGTTTTCAATAATATGCTCTCTCCAAGAAGAAGTATCT
TCGCTTCAAAAACTCGTCAAAACAATCGACCATAACTTTGATTTCAAAGA
ATTTGAACATTTTGCTTTCAAAATTGTGAAAGATGTCGCAAATGGACTTT
CACATTTACACAGTCTTGGTATAGCACATCGAGATTTGAAGCCAGCCAAT
ATTCTAGTGTCCAACCAGCATTTCCATGAATCTAAGTTTGGTGAACCAGA
ATGGTATTCAAACCCTTTAGTCTGTAAATTAACTGATTTTGGAGAAAGTC
GTTCAACAGTTGTCCATACCAGAGCAATGCTTATGAATGAAACGGTCCGA
AAATCGACCGTCAATGATTTTAATCGTGGAACATTTTTCTACAACGCACC
TGAAATTACAGTACCAAGCAAAAGACCACAAGCCTTCACACAAGCGATGC
TTGAAAAAGCTGACGTTTGGTCGTTTGGTATGGTTATTTTTTCAGTCTTG
AATGCGGATTATGGTGGTATTCCATATCAAGAAAACATCAAAAACGCCTT
AAAAGACAGACCAGAAATGATCGTTAAAGAACAAGTAATCGAATTAATGA
GAAATGAGATTCCGCCAACATGGAGCAAGAAGTATGCACACCTACACAAT
GCTCAATGGAGAGATCTGGTGAAAATTCAAAAAAGTTGCGCTGTTCATTT
TGGAGAACGCCCAACTATGGTGGAAGTTTTGCATAGTCTCGGAAAACAGG
TAACAGGTCGAATTGTAGCTCAGTAAGCGCCCAGCGACATTGTATACTTG
CGTTTGATAATTTAGTACTATAAATTTTTAGAAAATTACAATCCACAAAA
TTTTCGAAAATTAACCTTTTATACTTTTATGCTAGAAACATTTTAGTGCG
TAGTATGTAGTTTCTTGATTTCTCCGAAATAGAGGTTTTACTCAATGAAG
TATAAGCCCATAGAAGCGAATCTTTAACCTTTCTCAGGCAAGAAAAAGTG
AAGCCTTAGAATATACGCCGTACTTTTGATGACGGATTGAATTTAGTGGT
TTCTTTCTTTTCGAGTGGCATTTTTTTAAATCTAGCTGAAAATTATACTT
TTAATATCCGGAATTTGTATAAAAACCACACGAGCCGCTCAAAGCTGCGT
AACTTTGGCGGGTAAGATTTAGGGGCTTCAAATCCTACTAAGGAGATTAG
CTTCCAGCCCTTCGGAATTATATTTCATTGGTTTTATTTGCATGTTATTT
AAAAAACTTATCAATTATAATTTCAGGAGCCAGAAAGTGATTGTTGGGCT
TGTTTCAAGAATTCATCTTTAAATGAAATTGTTAGGTGAGATAATTAATG
TGGTATAAATTTAAAAATTGATATTCAAGGTTTGGGATGAAAATCAAATT
GGAGGTAAATAAGTAACGGATAAATGGATCTAGAAAGCGCTGAAAGTGTT
AAACTTGCGATAGAAAACGGCTTTTTCTATGAGCTATTTTGACCGTGAAA
CAAAAGAGAGGTTTCAATCGAAAATTCTATTTTATTAACAGTTATTTAAG
TCATCTAGGATGAATATTCGAATCCACAGCGTGAACAATTTCACAATCGG
TATGAAAATTAATTATAATATGGACACTGTCAACTAGTTGTGAAAAAGTT
AACTGAAAAAGTTCATTCAAATTTCTATTTTAGAAAAATTGAGATCATCA
GTCTTCCGATAAGTCAAAACTCGGCGATGGAACACTATAATGAAGAGCAG
GCACTTGCGTTCGAAAATACTGGGCTTCTCAGTGACCAACCACTAGAAAA
CGATGGTAGTAATGGTTGTACTTATCTTTGCCTGAAGATTGTTCAAAATT
TGCTAAAAGAAGAATACACAGGAGAAAAATTGGAAGGTAATCGAAGTATA
TTTGTTAGCGCTATCAAGGTCGTGTTTTTTGAGGAATTGTAATCCGGGTT
AATTAAAAAAAAAACATTCAGATTGGATAACTTTTTTATGAATTATTTAG
AAAGATATGTAATGAAAAAAAGTTAAAGGTCAAAAGGTTAGGTCAAGTTA
AAAGGCCTAAGGTAACTGAAGTATTCTATTTATTCAATTTAGAAATGGTA
GCAAAGGTTATATGGACCTATCCAGCTATTCTAAACAATTTTCGAAGCTT
TTCCAGCATGTCTCCGATGGATGCATACAAAGTTATGGTAGCTAATGATA
AGAACTTCATTAAGATGAATTTCGAATATGTGGTTGGAAGTTATCGCGCT
CTTACAGATTCGGGAAAGGCAGATCTACATGAAAAACTTAACTCACTAAA
AGAAGATTTTGTATCTGTTTTTGTTTGCCTTCCTTACACAGTTGTGATAT
TTCGCTCAAAAGGAAAGCTACATCTTATTGACACACACTCAATTCCTGAA
AAGTCGGGGGGAACTGGTACCGGGGTCATTGTATCGTCGGAGACAGCACA
AGATCTTTGTAATTGGTTACATCTCCGTTTGGAAAACACAGAAATGGAAG
TCAATACTCCACAATCATTGATTCTTCTAAAAGAAAAGTAAGGCTTCAGC
TCGGTAAACTTTTTCAATTTACACCATAGAGACCACAATGAACAGACATT
TTTTTTATTTTTGAAAAAGACTAAGAAGACTGGAAAAACAAAACCCTGTA
AATTCTTCCCTGGCTACCCCATACTTTAAAATATTTAACCATCTTTAATA
CACACTTCACTTTAGCACCGATGACATCCATTTCGATCTCAATATGGTGG
ATGACGATCAACCTGTTATCAAAATTAGAGAACCAACGGTAAGTTTTAAA
ATTATTATTTTAATAGAATACTGGGTTTACTAATGCAGTGAAAAGATAAT
TAGTAACTTTCGTTTTCAAACAAAGTTAAGATTTAGCGATCCCCCACCTC
ATCTGCTCGACTCTTAGAACATCGACAGAGTTCGTAAACCTTTGTACACC
TCTTTCGTGGCATGGTTTAGTCGCAGGAGAAGGTATATTATCTATCAAGT
GAATCGGTCATGATGCGGGAGTTGGGTCAGACCTTGACACCTTAAACGTT
AGTTAACATTGTACCCGTCACAGTACGCAACATTTTTGCCCTTAGGATTT
ATAGTACGTATTTTATTAATTTAGGGAAATTTGTCTAAAGCAGCAGAGCC
AGCTTCTTCGAAATCAAACGAAGCACATAAAACAAGAAACCCGTCTAGAG
TGGAAAAGAACTTTGTAAGAATTCAATTTAATTTAATTGCAGCGATCGCA
GTACTATGAAAAATAACCAAAGTCCTATAAAATAAAATTGAAACGTAAAC
TAATTTCATTTACAGCTTTGCGAGTAAGAGACTGATCAATTTTCAAACCT
CGAATTTACTTAATTACTTACTTTAGGTAAATCTGACTGAAGATCCGGAT
TCCTCGAATTCAAGCAAAGCAGAGAAGACTAAAAATTCTTCTAGTGATAG
ATCACCCTTGGTAAGATTGTCATTGGATTTGAAATGTAACCGATTCACAA
TTTGTTTTCGTGAACTCAATAAAACATTTAAAATTGAATCATACAAAAGC
TTTTTTTAGAACAATCTTTACGAAACACGATTTTCTAACGGAGTTTGTGT
AATATCCAGGATCTGTTCGGAGATAAAGGTTAAACCCATTCAAGCCCATT
CAATAAAGTGAAAATGAATCAAGAGTTGATAAAACAATAGTTTACATTCA
AATGCTTTTTGTTGGTTTTAGGTAAATACGTTTAAAGAATCTGAGTCAAC
TTCTTCAAAACCGAACGAGACAGAAAAACAAGGAGAATTCTCAGGAAAAA
AGCCGTCAAGAAAAAAAAGACCCTCTGTAAGATAATAACATTGCCAACAA
ATAAATGACCAGGATTTTCAATTTAATCTCTCATATTGAAACCTCCAATA
AATGATCCTGTGTAAAATAATTTAACCAAGACATTACTGAGCATCACCAT
TTGACCTATTTTTTAAATATAGTCTGTGAGGAGACCCTGTAAGAATGTTA
TCGCGCATGTCTCGATTTAACTATCTAAAAATTAACGAACAGAGAGCATG
CATCCATCTTTCTATTAAGGTGAAACAGATTATAACCGAGGGGGGGGGGG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
GTTGGAAAATTTTCGAAAAATTAACAAGCGGGGGGGCCGTTTATTTGGAA
CCTAAGAGTAGTTACCAAAATTTTAATTTACTAATCTACTTCATTAATTT
CAAATTTAAGAAAGACCTTTCTGATATCTTTTGATGATGACACTTTTTCT
GTGTTTATGAGTTGTAATTTGACAATTTGACCCTCATCAATTGACAACAT
ATACGCTTTGTGTTACACGTCATACCATACTATGAGACGATGCCTTGTAG
ATATTAACAAAATCGAGGACACTCGCTTACCGCCAAAGTAGCCTTCATTT
AGTGAATCAAGTCGCAAGTGGGGTCAAATAAACCCTAACACCTTATAAGA
TAACACTGTACCCCGCAAGGTACTAAACCGCTCAAAACATTTACACTTAA
GTTTTACAGTACGTGTTTTTTATTAAATTTAGAAAAATCTATCCAAAACA
GCTGGACCAAGCTCTTCCAAATCAAAGAAACCAAGACACCCGTCTAGTGA
TAGGACAAACTTTGTAAGATTTCAATTAAATTTAATTGCAGTACCAAACA
ACAAAGTCTTTGCTGAACTAAACCTGTACAATCAGCGCAATAAAATAAAG
TATAATCAATGTAGTCAAATTAAATCTTATTTACGATTTTTAACAACTTT
GCGAGCAAGAGACTGATCAATTTTCAAATCTCGAAGTTACTTAATTACTT
ATTTTAGGTAAATCTGACTGAAGATCCAATTTCCTCGAATTCAAGCAAAG
CAGAGAAGACTAAAAATTCGTCTAGTGATAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015189XLOC_015189Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027040-exon-sc0000601-1575043694:15254..16202TCONS_00027040-exon-sc0000601-1575043694:15254..16202Clytia hemisphaericaexon
TCONS_00027040-exon-sc0000601-1575043694:14668..14726TCONS_00027040-exon-sc0000601-1575043694:14668..14726Clytia hemisphaericaexon
TCONS_00027040-exon-sc0000601-1575043694:14117..14319TCONS_00027040-exon-sc0000601-1575043694:14117..14319Clytia hemisphaericaexon
TCONS_00027040-exon-sc0000601-1575043694:13466..13910TCONS_00027040-exon-sc0000601-1575043694:13466..13910Clytia hemisphaericaexon
TCONS_00027040-exon-sc0000601-1575043694:13215..13287TCONS_00027040-exon-sc0000601-1575043694:13215..13287Clytia hemisphaericaexon
TCONS_00027040-exon-sc0000601-1575043694:12789..12878TCONS_00027040-exon-sc0000601-1575043694:12789..12878Clytia hemisphaericaexon
TCONS_00027040-exon-sc0000601-1575043694:12543..12626TCONS_00027040-exon-sc0000601-1575043694:12543..12626Clytia hemisphaericaexon
TCONS_00027040-exon-sc0000601-1575043694:12177..12281TCONS_00027040-exon-sc0000601-1575043694:12177..12281Clytia hemisphaericaexon
TCONS_00027040-exon-sc0000601-1575043694:10690..10770TCONS_00027040-exon-sc0000601-1575043694:10690..10770Clytia hemisphaericaexon
TCONS_00027040-exon-sc0000601-1575043694:10420..10495TCONS_00027040-exon-sc0000601-1575043694:10420..10495Clytia hemisphaericaexon
TCONS_00027040-exon-sc0000601-1510915933:15254..16202TCONS_00027040-exon-sc0000601-1510915933:15254..16202Clytia hemisphaericaexon
TCONS_00027040-exon-sc0000601-1510915933:14668..14726TCONS_00027040-exon-sc0000601-1510915933:14668..14726Clytia hemisphaericaexon
TCONS_00027040-exon-sc0000601-1510915933:14117..14319TCONS_00027040-exon-sc0000601-1510915933:14117..14319Clytia hemisphaericaexon
TCONS_00027040-exon-sc0000601-1510915933:13466..13910TCONS_00027040-exon-sc0000601-1510915933:13466..13910Clytia hemisphaericaexon
TCONS_00027040-exon-sc0000601-1510915933:13215..13287TCONS_00027040-exon-sc0000601-1510915933:13215..13287Clytia hemisphaericaexon
TCONS_00027040-exon-sc0000601-1510915933:12789..12878TCONS_00027040-exon-sc0000601-1510915933:12789..12878Clytia hemisphaericaexon
TCONS_00027040-exon-sc0000601-1510915933:12543..12626TCONS_00027040-exon-sc0000601-1510915933:12543..12626Clytia hemisphaericaexon
TCONS_00027040-exon-sc0000601-1510915933:12177..12281TCONS_00027040-exon-sc0000601-1510915933:12177..12281Clytia hemisphaericaexon
TCONS_00027040-exon-sc0000601-1510915933:10690..10770TCONS_00027040-exon-sc0000601-1510915933:10690..10770Clytia hemisphaericaexon
TCONS_00027040-exon-sc0000601-1510915933:10420..10495TCONS_00027040-exon-sc0000601-1510915933:10420..10495Clytia hemisphaericaexon
TCONS_00027040-exon-sc0000601-1491911889:15254..16202TCONS_00027040-exon-sc0000601-1491911889:15254..16202Clytia hemisphaericaexon
TCONS_00027040-exon-sc0000601-1491911889:14668..14726TCONS_00027040-exon-sc0000601-1491911889:14668..14726Clytia hemisphaericaexon
TCONS_00027040-exon-sc0000601-1491911889:14117..14319TCONS_00027040-exon-sc0000601-1491911889:14117..14319Clytia hemisphaericaexon
TCONS_00027040-exon-sc0000601-1491911889:13466..13910TCONS_00027040-exon-sc0000601-1491911889:13466..13910Clytia hemisphaericaexon
TCONS_00027040-exon-sc0000601-1491911889:13215..13287TCONS_00027040-exon-sc0000601-1491911889:13215..13287Clytia hemisphaericaexon
TCONS_00027040-exon-sc0000601-1491911889:12789..12878TCONS_00027040-exon-sc0000601-1491911889:12789..12878Clytia hemisphaericaexon
TCONS_00027040-exon-sc0000601-1491911889:12543..12626TCONS_00027040-exon-sc0000601-1491911889:12543..12626Clytia hemisphaericaexon
TCONS_00027040-exon-sc0000601-1491911889:12177..12281TCONS_00027040-exon-sc0000601-1491911889:12177..12281Clytia hemisphaericaexon
TCONS_00027040-exon-sc0000601-1491911889:10690..10770TCONS_00027040-exon-sc0000601-1491911889:10690..10770Clytia hemisphaericaexon
TCONS_00027040-exon-sc0000601-1491911889:10420..10495TCONS_00027040-exon-sc0000601-1491911889:10420..10495Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000601supercontigsc0000601:10420..16202 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.151834	0.366363	0.742257	0.600123	0.492239	0	0.990539	1.23042	1.74132	0	0	0	0	0.347058	0.322819	0	0.0256614	0	0	1.69423	3.94525	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027040 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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