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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027036 ID=TCONS_00027036|Name=TCONS_00027036|organism=Clytia hemisphaerica|type=transcript|length=3250bpRun BLAST on NCBI protein sequence of TCONS_00027036-protein >TCONS_00027036-protein ID=TCONS_00027036-protein|Name=TCONS_00027036-protein|organism=Clytia hemisphaerica|type=polypeptide|length=585bp MADSSFMSSNNGLRSPTIRQQRLFSKNGLECRICDESFALQGEKVPRLLARun BLAST on NCBI transcript from alignment at sc0000601:148880..169977+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027036 ID=TCONS_00027036|Name=TCONS_00027036|organism=Clytia hemisphaerica|type=transcript|length=21098bp|location=Sequence derived from alignment at sc0000601:148880..169977+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000601:148880..169977+ >TCONS_00027036 ID=TCONS_00027036|Name=TCONS_00027036|organism=Clytia hemisphaerica|type=CDS|length=14064bp|location=Sequence derived from alignment at sc0000601:148880..169977+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027036 vs. Swiss-Prot (Human)
Match: TRI23 (E3 ubiquitin-protein ligase TRIM23 OS=Homo sapiens GN=TRIM23 PE=1 SV=1) HSP 1 Score: 543.117 bits (1398), Expect = 2.016e-180 Identity = 285/556 (51.26%), Postives = 394/556 (70.86%), Query Frame = 2
Query: 119 LECRICDESFALQGEKVPRLLACGHSVCHSCLCNIHVDGGHVCCPFDRTPTEIGDSGVWGLKKNFALLELLEQIECSKT--ILPNDESNKEDISNLTKCDEDESHVAQXXXXXXXXXXXXXXAEMIHKSKTLSQHSIVPISEKTKINPPCQLHRSHVLEFACLEESCRDNPLMCYTCKDYGAHKGHKHVLIELEADTIRKSISNAVLHVKTFSGEVSEFVKKLVRITESIEGG-IVFEQPSRSSHNERXXXXXXXXXXXEIMARQTIGTAEKARLSVRQYFDDLRDTIQQQESEALSVINLYVREKLHSLRQQQEDMAVLISQVSNVCSQCDRALKRSDAEVIQARSNIVKLLDTVQQQQQLFTDLYELCKEDPTIPFVFTKDNRVHIGQKMEMRVVALGLDNGGKTSILFKLKQNEFVSTITTIGFNVETIEHQNIKFTIWDVGGVQKLRPLWRHYYLNTQAVIFVIDSTNSERLCEAHXXXXXXXXXXXXXXXXILIYANKQDLPNAVSMDTLSERIGIHRLCSGRTWTMIPCSAHTGDGLQRGLDWLANQFLS 1777
LEC +C++ F+LQG+KVPRLL CGH+VCH CL + + G + CPFDR T++GDSGVWGLKKNFALLELLE+++ +ES ++ +CDEDE+H+A ++CT C T+LC C+++ H +KTL++H VP+++K C H+ H +EF CLEE C+ +PLMC CK+YG H+GHKH ++E EA+ IR SI + ++TF+ E+S++ +KLV I + IEGG + E +H E GTAE AR +R YF DL +T+ +QE ALSV++ +VREKL LRQQQEDM +L+S+VS C C++ L++ D V+ A+ I +LL+T+Q+QQQ FT++ + + D +IP FTKDNRVHIG KME+RVV LGLD GKT+ILFKLKQ+EF+ I TIGFNVET+E++N+KFTIWDVGG KLRPLW+HYYLNTQAV+FV+DS++ +R+ EAH ELAKLL EK L DAL+LI+ANKQD+ A+S++ ++E + +H+LC GR+W + C A +G GL GLDWL+ Q ++
Sbjct: 29 LECGVCEDVFSLQGDKVPRLLLCGHTVCHDCLTRLPLHGRAIRCPFDRQVTDLGDSGVWGLKKNFALLELLERLQNGPIGQYGAAEESIGISGESIIRCDEDEAHLASVYCTVCATHLCSECSQVTHSTKTLAKHRRVPLADKPHEKTMCSQHQVHAIEFVCLEEGCQTSPLMCCVCKEYGKHQGHKHSVLEPEANQIRASILDMAHCIRTFTEEISDYSRKLVGIVQHIEGGEQIVEDGIGMAHTE-----------------HVPGTAENARSCIRAYFYDLHETLCRQEEMALSVVDAHVREKLIWLRQQQEDMTILLSEVSAACLHCEKTLQQDDCRVVLAKQEITRLLETLQKQQQQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA 567 The following BLAST results are available for this feature:
BLAST of TCONS_00027036 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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