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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027031 ID=TCONS_00027031|Name=TCONS_00027031|organism=Clytia hemisphaerica|type=transcript|length=2078bpRun BLAST on NCBI protein sequence of TCONS_00027031-protein >TCONS_00027031-protein ID=TCONS_00027031-protein|Name=TCONS_00027031-protein|organism=Clytia hemisphaerica|type=polypeptide|length=630bp MAKPKGKQGKVATNKKGGPSSKQNPNFKAKNKKGGAGFGGKGKQFKKKSQRun BLAST on NCBI transcript from alignment at sc0000601:83578..98569+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027031 ID=TCONS_00027031|Name=TCONS_00027031|organism=Clytia hemisphaerica|type=transcript|length=14992bp|location=Sequence derived from alignment at sc0000601:83578..98569+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000601:83578..98569+ >TCONS_00027031 ID=TCONS_00027031|Name=TCONS_00027031|organism=Clytia hemisphaerica|type=CDS|length=34074bp|location=Sequence derived from alignment at sc0000601:83578..98569+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027031 vs. Swiss-Prot (Human)
Match: PUM3 (Pumilio homolog 3 OS=Homo sapiens GN=PUM3 PE=1 SV=3) HSP 1 Score: 342.813 bits (878), Expect = 3.939e-107 Identity = 195/517 (37.72%), Postives = 308/517 (59.57%), Query Frame = 3
Query: 360 EIVTKMMGIYEKLRRKDVTAEEKTKLIDEAVIVAEGKENEVVFKHSTVRVLEMCVKYGKNEQREKIFKIFKDNLVTLLTSKYAKFLVEKFIEYGSKEQRKKIVESFYGKVKKLIKDKRAGSILEEIYCKYANASQRAALVEEFYGPEFAVFKVASGRTLEDILENDPDKKEKIMKHMKESLTLLCQKD-VLGLSVVHRALLDFFKYANTTQKSEIVEILKTNLVHVLHTKDGSKVAMNCIWLASTKDRKAITKSFKTFVMKICKEEFGHKVMFSLFDVMDDTVLLKKALFPEILINIEELMVDQYGRKVLLYILKPRNNSNFLPEVQKLLEQADDNKYSKKDSSVRQGELRDILLPNLLACLTQNAKDIMLNKSTVVVFLAALEVSKDSKQTTMLMEKVASIFAKPLKXXXXXXXXXXXXXXXXXXXXXXXXXXXGPKADHPVVDACGHWCLKSVIKQDKKRQENGYGTLFSTILCNHVTEGGFSDWATENRGAFVLVSLLESGIQSVTDRVKADLK 1907
+IV + ++E LRRKD E++ KL+ + + +GK + F H + RV++ ++YG EQR++ F+ +D+LV L +KY++ +V+KF+ YGSK Q +I+ SF G V+K+++ A +I+E Y A QR L EE YG F ++K A RTL+ +LE P+K E IM MK+ LT + QK+ V+ S+VH+ LDFF YA +SE++E ++ +V++ HT DG++VAM+C+W + KDRK I K+ KT+V K+ ++ H V+ + FD +DDT L+K+ + EI+ ++ ++ D+YGRKVLLY+L PR+ ++ + E+ ++L++ D N +SKKD+ VR+ EL + + P LL+ L ++A++++L+KS V+ L + Q T M +AS+ A L A+HP GH LK +I+QDKK +ENG F+ L HV WA+ NRGA +L SLL+S V ++VKA LK
Sbjct: 133 DIVVRAKQMWEILRRKDCDKEKRVKLMSDLQKLIQGKIKTIAFAHDSTRVIQCYIQYGNEEQRKQAFEELRDDLVELSKAKYSRNIVKKFLMYGSKPQIAEIIRSFKGHVRKMLRHAEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKSADHRTLDKVLEVQPEKLELIMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYAPPKLRSEMIEAIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKVANGQYSHLVLLAAFDCIDDTKLVKQIIISEIISSLPSIVNDKYGRKVLLYLLSPRDPAHTVREIIEVLQKGDGNAHSKKDTEVRRRELLESISPALLSYLQEHAQEVVLDKSACVLVSDILGSATGDVQPT--MNAIASLAATGLHPGGKDGELHI--------------------AEHP----AGHLVLKWLIEQDKKMKENGREGCFAKTLVEHVGMKNLKSWASVNRGAIILSSLLQSCDLEVANKVKAALK 623 The following BLAST results are available for this feature:
BLAST of TCONS_00027031 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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