TCONS_00027026 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027026
Unique NameTCONS_00027026
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length626

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027026 ID=TCONS_00027026|Name=TCONS_00027026|organism=Clytia hemisphaerica|type=transcript|length=626bp
TTTAAATAGTACTTTCTTGTTCACAAATAAAAATCTGTTTATAGTCCTCA
ATAGGCAAAGGCAGTTGCATGACTGTAACGCCCTAAAACGAACTTCACAC
ACGCAAATTCAAATCTGTTGATAGTTGTACTGTGCTATCTCGAACGAAAT
ACGTTTCGGTAACTCTTGGCGTCGAGCCAGGGTTAGGTGAGCATTATTGT
CCATTGTCAATATGTCGTATGATATCATGAGCGATAGGCGGTGTGGATGA
TTGTAGTAATCAACTAAAATTGCTCGGACTCGGTTACCGCAAACCCAATG
ATATTAGGTTCAAATTGAAGATACGTCATGTCGATCATCATCATCGGCAT
CCTGTTTTTCATTTACAAGTTTTGGAAGCAAAATAAGTTTGCCACGGAAT
GCTCGGTATATGTCTGATTATCGGCAAGTTAATAATTGGAAAGATTGCCT
AAGTTCGCCCAATCACATCCCTGTCATGGATATAGGCTGTTAACTGACGG
AATGTTAATATTATAGATTCCTTGCTTGTGGCTTCTCCGATGCCACTGAA
TTAGGATTCCTTCAATAGTTTTTGTTGCGTTTATGTTTTGACAGAATCTT
TTCTGTTGACGAAGTCACTACAGCCG
Run BLAST on NCBI

transcript from alignment at sc0000600:209265..209890

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027026 ID=TCONS_00027026|Name=TCONS_00027026|organism=Clytia hemisphaerica|type=transcript|length=626bp|location=Sequence derived from alignment at sc0000600:209265..209890 (Clytia hemisphaerica)
CGGCTGTAGTGACTTCGTCAACAGAAAAGATTCTGTCAAAACATAAACGC
AACAAAAACTATTGAAGGAATCCTAATTCAGTGGCATCGGAGAAGCCACA
AGCAAGGAATCTATAATATTAACATTCCGTCAGTTAACAGCCTATATCCA
TGACAGGGATGTGATTGGGCGAACTTAGGCAATCTTTCCAATTATTAACT
TGCCGATAATCAGACATATACCGAGCATTCCGTGGCAAACTTATTTTGCT
TCCAAAACTTGTAAATGAAAAACAGGATGCCGATGATGATGATCGACATG
ACGTATCTTCAATTTGAACCTAATATCATTGGGTTTGCGGTAACCGAGTC
CGAGCAATTTTAGTTGATTACTACAATCATCCACACCGCCTATCGCTCAT
GATATCATACGACATATTGACAATGGACAATAATGCTCACCTAACCCTGG
CTCGACGCCAAGAGTTACCGAAACGTATTTCGTTCGAGATAGCACAGTAC
AACTATCAACAGATTTGAATTTGCGTGTGTGAAGTTCGTTTTAGGGCGTT
ACAGTCATGCAACTGCCTTTGCCTATTGAGGACTATAAACAGATTTTTAT
TTGTGAACAAGAAAGTACTATTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015181XLOC_015181Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027026-exon-sc0000600-1491911889:209265..209890TCONS_00027026-exon-sc0000600-1491911889:209265..209890Clytia hemisphaericaexon
TCONS_00027026-exon-sc0000600-1510915933:209265..209890TCONS_00027026-exon-sc0000600-1510915933:209265..209890Clytia hemisphaericaexon
TCONS_00027026-exon-sc0000600-1575043694:209265..209890TCONS_00027026-exon-sc0000600-1575043694:209265..209890Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000600supercontigsc0000600:209265..209890 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.10602	1.24447	0.481651	0.848197	0.114733	0	0.218764	0	0.071694	0.0888046	0	0.0566618	0	0	0.144931	0.155533	0.255472	0.261851	0.180881	0.473197	0.164517	0.120369	0.195099	0.177373	0.091345	0	0.11666	0.124502	0.0944305	0.0962098
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027026 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top