TCONS_00027015 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027015
Unique NameTCONS_00027015
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2884

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027015 ID=TCONS_00027015|Name=TCONS_00027015|organism=Clytia hemisphaerica|type=transcript|length=2884bp
TCTTAGTTATGAATAAAAAAGAATtgtaaatgttttgaaaaaaatatggc
AGAATCGacTTGTTCGTTGGACAATAATTTGACGGCTATGGTTAACAGCC
AGAGTCTCGCCTTGCAAAAGGAGGTGGATCCATTGGCAAACCAACCGATG
CTTCAAGGAGTATTGAAGCATAACAAAAAGGATAATGTGGAGTCCTTAAA
GACCTTGGTAACAACCGAGGCAACAACCGAGAATGAAGAAGGTTCAGAAC
ATTTGATGAAGATTGAAACCAATCTACAAACTGTAGTTCTTGACAAGGAA
AACTTGGATATCGATGATGCTGGAGATGAGCAGATCACCACGAGCGACAC
TACAAAATTCAAATGTGTCGCTCGATTTCAAAGCTATTTTGGAGGATTGT
CATTGCAATTTGCACCTATCATAGCAATCGCATTGATGTTTATTATCACT
TTGGCAACAACTCTTTATTGGAAATTATACACACCGAAACGAGAACTAAG
CCAGACCGTACAAATACTGAATTTGATTGCATACTACTTAATTGAAGAAT
TTACTAGACCACTACTCCGAATTGGCCGCGGAATAATGGTTTATTCCTTC
CTATTTCACTGCCTATTCTTCCCTGTCCAAATTTGGATAGATTTTGAATT
CTCAAAACGTTTAAAGCCTACCTTTGATCGTATAAGACAACCGAATTTTC
TAATAATCTCATGTGCGATTATGAGCTTGGTTATTAGTCTGGCCTACCAC
TATATCGGAGATGACGAAATTTCACAAATAATATTCCTCGTTGAACAGGC
GGAGCACTTCGTCGAAATGATAAAACACTTTATCTTAAACGACCTGTGGT
ATTACTCCGGTATAATTCATGTTCCATGTATCCCGATTATTATTTGGTAT
GAATACATGGAAGAAGGAAATAGTATCAATTTTAACCCTTATAAACCGTT
CAAAGTTGACATAACTTGGGAAGATGTGTTCTTCGTTTGGGAATTATCAT
CAATTTTTGCTTTGGCGATATATTTCTACGATGATTTGGTGGTATTTTTC
GAACAATATTCAACACCCGAACCTACTTTACTAGAGAAAACCTCCACTTT
CATTTTCGGAGAACCCCAACCGGAGCAAGATTTAATTGAACATAGTTTTG
ATTGGATGTTACACACTCCAATGGTTGAATGGATAAGAGACAGCCCATTG
GTTGAATGCATAACAGACAACATTGAACCATTAATTGAATGGATGAAAGA
CAATATCGACATAATGACTGAATGGATAAAAGACAACATCGACCTATTGG
TTGAATGGATGAGAAACACCTCATTGGTTGAATGGATGTCAAATAACTTG
TTAATCTCACTTGAATTGTTTGTGTTGACTTCACCGATTATTATGTACCT
GGTTTTCTATACCATTGTTGTTGCCATGTCAACAACTCATTTTATTGGAT
TGATCATATTGGCTACATTCCGTTTTACCAGAACACTCACACAACAGATG
ACTTGGAAAACAATCATCCATAGCTTGNGTCATATTGGCTGCATTCCGTT
TTACCAGAACACTCACACAACAGATGACTTGGAAAACAATCATCCATAGC
TTGGTATTGAGTTTGATTTTGATGACTACAAGCTTCTACTTGTATACCTA
TCTACCATTGATGGCGATTTCAGGCTATATGCCACAATTGACAGGATTGA
ATACCGTTTTGGAGCTCGGAATCGGATTAGTTTTCAGCGTTATCAACATT
TGTGGCAGTTTCTTCTTGGCTGTCATCTCACCACTACTTCTGATCATGAT
TCATACTGACATCACCAATGGAATCGCACTATCAAAAATTCTTTACACAA
TAAAAAGAAATGTAACactcaaaaatatatatttggttCTACAAGTCACA
TTTGGAACACTTTGTGTGGCCATCTATTTCAAACCTGAATCAGCATTGGT
CATATACTCATTCATCCAATTGCACCTTCCAACACTGCTCCACCATATCA
TTTCTGGCATCTCATTCACTGTCAACTTGTACATCGGTCTCTTCTTCGGA
ATCTTGCTACCATTATTGATCACGTGGGCTCATGTTATATTGGCAAATTT
TGCTGTCTcctcaaaacaataaaaatcttTACTTTAGTATTTTACCGTAT
atgaattttgttaaaaaattcaaaaaaaattttgactttgacttaatatt
tatctttttaaacactttgatattttgatatttttatttttttggacatt
ttgaaTACATTTTTATGTATTTCATATATTTTATTGATGAGTAGACAAAA
CGCAAAAAATGACAGTAAACATAATAGTAACGACACCCTGATTGACATTG
ACGACACATAATGAGAGACTATAAAGAATAAGAAAAGTGCAtggaaaaat
caaattgaatGCAGAAAGATATGCTAATCAGCAAAAAGACCTATGCGAAG
AGAATTTGATAAAGACTTTCAGATTCGAAACAGCAGCTCGGCAGAAATGA
AAATGATGAGATGGACTGACCTGGAGCTATGTTGAGAATTGATGAGAATT
TATTGACGGAAGAAAAGGACAAAATGAGATCAATGCTACGAGAACAGGTT
AAACTGGGCACAATGAACAGCTTGTTTGAGGAGGATTTGACCGTTATACG
ATGATACGATGAATGGATAGCTAGGTTAATGTTGAAGAGATCTGGTGGAC
GTATAACGCTTGTAGAGTTATGAAAAGGCTAACATATTCAGATTCACTCC
TTTCTTATTTTCGATCAATAAATATTTGGTGAGGCAGATCGGGAAAAAAT
AAACGAGAGAATTAAAAAGATGACGAAAATCAATTGAGAAAAGGATTACC
ATCGAGGAAAGTTGCTGTATTGTAAATAGAAAac
Run BLAST on NCBI

transcript from alignment at sc0000600:44281..49497-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027015 ID=TCONS_00027015|Name=TCONS_00027015|organism=Clytia hemisphaerica|type=transcript|length=5217bp|location=Sequence derived from alignment at sc0000600:44281..49497- (Clytia hemisphaerica)
TCTTAGTTATGAATAAAAAAGAATTGTAAATGTTTTGAAAAAAATATGGC
AGAATCGGTAAGTCTCTCTACTCCAGTAAGAGCTAGGGTTTTAAAGTTTC
TTATTAAATGGACAGCCTGGAACATCGCACGATCTTAGTATACCGCAATA
ACAGTTTATACTTCTCCAGCTGGTACANGCATCGTGCGATCTTAGTATAC
CGCAATAACAGCTTATGCTTCTGTTCTTCGAAATGATGATTTTCGTCCGT
ACGGGCGGTATGAAATTTAAAGTTCTAAATAATGAATCAAAGTCTCTTTC
TTTTAATTTGAACAAGCTCTGATATTATCGAGCACTTTCGGCAGATAGAA
GAAAATAGACTTATACTTCTGTTCTTCTATTTTTATATCACAATCCGCTA
TATCGTGATATTGCTTATCGATGATAAAGAGCGATAAAAAAATATCCAAA
AAGAAAACGTTCCACGGTGTGAAATCACGGCATAGGAAGAATATTGTCAA
TATTCCCCTATACCCTTACATTTTTGTTTAAGAAGTTTGATCTAGTTTGA
GTAAATCAAGTCAAATTTAATTTGTATTTCTAATTGCACTCAATTGATAC
ATTTGATAATAGATTTGATATATATCCCCCTAATAGTTGGGACCGAATTT
TCCAAAAAAAACTGAATATCGGTTCCCAGCTGGCATACAACGTTGTTTCA
ACGTTCATCTAACGTTATATGAACGTTGTGAACGTTAGATAAACGTTGAA
ACAATGTTATGTGTCAGCTGGGTTAGCCAAATATCTCAATGCCAAACTTA
ATTATAAATATCTTGTTCCCCCTCTCTGCCTAGTTGATAAAAACTAAGTA
TTGTCATCTGTAATTTCACTTTTTACATTTTTAGACTTGTTCGTTGGACA
ATAATTTGACGGCTATGGTTAACAGCCAGGTAAATATTCTTTTTATTTCT
GAATCAAACCAGAAAACCGACGGAGCACTGTGTGGCATATTGATATGGTG
GTTTAACGTTTTTTATAAGAACAAACTATAACAACAGAGCTTCAATGGCC
AAAATGTTAAGAACATGCTAAGAATATTTTAAGGGTTCAAAAACTTTGGA
TGTTCTTTAAAAAAAACTTGTATTGACCTTGTTTGCTGCGTAGGTAACTG
AGGTTCTATTCCCACTCGCAGTGGTTCAATTGGCAAGTGAAATGAATCTT
CTCCCGGGTTGAGCAATGCCATGTAAGGTAATTGGGTAGCGAGTCCGAAT
TGTGACAGGGCGCCAATCGAATACGTCCATACTATAATTGTAAAAATCAG
ACCTCAGAGCGTCCTTCACCTCAACTAAATAGAAATAGAATCAGAGGTCT
GTTTACTTAAATTAAAAGTATTTCTTTATTATGCAACTATTTTTACCCTT
TTCAGAGTCTCGCCTTGCAAAAGGAGGTGGATCCATTGGCAAACCAACCG
ATGCTTCAAGGAGTATTGAAGCATAACAAAAAGGATAATGTGGAGTCCTT
AAAGACCTTGGTAACAACCGAGGCAACAACCGAGAATGAAGAAGGTTCAG
AACATTTGATGAAGATTGAAACCAATCTACAAACTGTAGTTCTTGACAAG
GAAAACTTGGATATCGATGATGCTGGAGATGAGCAGATCACCACGAGCGA
CACTACAAAATTCAAATGTGTCGCTCGATTTCAAAGCTATTTTGGAGGAT
TGTCATTGCAATTTGCACCTATCATAGCAATCGCATTGATGTTTATTATC
ACTTTGGCAACAACTCTTTATTGGAAATTATACACACCGAAACGAGAACT
AAGCCAGACCGTACAAATACTGAATTTGATTGCATACTACTTAATTGAAG
AATTTACTAGACCACTACTCCGAATTGGCCGCGGAATAATGGTTTATTCC
TTCCTATTTCACTGCCTATTCTTCCCTGTCCAAATTTGGATAGATTTTGA
ATTCTCAAAACGTTTAAAGCCTACCTTTGATCGTATAAGACAACCGAATT
TTCTAATAATCTCATGTGCGATTATGAGCTTGGTTATTAGTCTGGCCTAC
CACTATATCGGAGATGACGAAATTTCACAAATAATATTCCTCGTTGAACA
GGCGGAGCACTTCGTCGAAATGATAAAACACTTTATCTTAAACGACCTGT
GGTATTACTCCGGTATAATTCATGTTCCATGTATCCCGATTATTATTTGG
TATGAATACATGGAAGAAGGAAATAGTATCAATTTTAACCCTTATAAACC
GTTCAAAGTTGACATAACTTGGGAAGATGTGTTCTTCGTTTGGGAATTAT
CATCAATTTTTGCTTTGGCGATATATTTCTACGATGATTTGGTGGTATTT
TTCGAGTAAGTTAAGGAACTTTGCTTTGTTTAATTTGCCACTTCTGTATA
TTATTCTAAGGCTTCCCTGAATCGCATGCCCCACCAGTAACGAAGTTAAG
CTTAACTGTCAAGCTGTTGATCAAACTGTTGATATTAGTTCAGTAAATCA
AATACTACAAACCATTGGTAAACCGCATCCCTTAGAAAATCCCTCTTAGT
AAAGGACCATTCCCAGCTGGCACACAACGTTGTTTCTAACCGAGTCACTA
AAACAGGAATATTGTATCAAAGATTCAGCTCACAATGAAAATTGGAAAAT
CATGAGATTGTCACTACTTCTAGAAACTAATCAATTCATATTAATTCTTT
TCACTTTAGACAATATTCAACACCCGAACCTACTTTACTAGAGAAAACCT
CCACTTTCATTTTCGGAGAACCCCAACCGGAGCAAGATTTAATTGAACAT
AGTTTTGATTGGATGTTACACACTCCAATGGTTGAATGGATAAGAGACAG
CCCATTGGTTGAATGCATAACAGACAACATTGAACCATTAATTGAATGGA
TGAAAGACAATATCGACATAATGACTGAATGGATAAAAGACAACATCGAC
CTATTGGTTGAATGGATGAGAAACACCTCATTGGTTGAATGGATGTCAAA
TAACTTGTTAATCTCACTTGAATTGTTTGTGTTGACTTCACCGATTATTA
TGTACCTGGTTTTCTATACCATTGTTGTTGCCATGTCAACAACTCATTTT
ATTGGATTGATCATATTGGCTACATTCCGTTTTACCAGAACACTCACACA
ACAGATGACTTGGAAAACAATCATCCATAGCTTGNGTCATATTGGCTGCA
TTCCGTTTTACCAGAACACTCACACAACAGATGACTTGGAAAACAATCAT
CCATAGCTTGGTATTGAGTTTGATTTTGATGACTACAAGCTTCTACTTGT
ATACCTATCTACCATTGATGGCGATTTCAGGGTAATATTTTTTGTGTGTG
TACAACACGCTATGTTTGTTGTTTCTTTTCTTTGAAAAGCGTTGTATGAT
GGTAAGAGATAACCCTTGAATTATAATCACTATATCCTACAAGATCAGTG
GCACATCCCTGTACACCCTGCCCAAGTCCTCACCCTGAGACCTGTGTTTC
CCTTCCCTTACTTGTTTTTCTTTTTTTGAGGTGTTTTAACATTTTTATAT
GATATGATGATATGATATGATATCGTGGTATATGACCAGCAATTTTGCTT
TTATCATTTCGTTTAGCTATATGCCACAATTGACAGGATTGAATACCGTT
TTGGAGCTCGGAATCGGATTAGTTTTCAGCGTTATCAACATTTGTGGCAG
TTTCTTCTTGGCTGTCATCTCACCACTACTTCTGATCATGATTCATACTG
ACATCACCAATGGAATCGCACTATCAAAAATTCTTTACACAATAAAAAGA
AATGTAACACTCAAAAATATATATTTGGTTCTACAAGTCACATTTGGAAC
ACTTTGTGTGGCCATCTATTTCAAACCTGAATCAGCATTGGTCATATACT
CGTAAGAATAAATCTTTTATTGTTTCAATTTTTTTTTAAACACTCCTGCA
TCATGTATCATAGATCTGCCTTGCTCACACTGGAAGAAACACCCTATAAT
TTCATCCTCGCTGAAAAAAGATATTCCCATCCACATTGAGAATGATGCTC
TATCACATAAACCCAATTCTTTAGAACAGATGTCATTTTAAGCCTCGTAT
TGTTCCTATTCTGTTCTCATTCTTAAGATGAAACTGGAATATGAAAAGCT
TTCATCTTCTTATCTAATTAGAGTTCAGCCGTTCTATGCTCAAATGTATT
CATATATTCTCATTTTTCGGCATTTTTGAGCCTCATTGTTCTGATGAAAT
TATTCTTGAAATAAAAAAATATATTCCTCCTTTCTCTTATAGATTCATCC
AATTGCACCTTCCAACACTGCTCCACCATATCATTTCTGGCATCTCATTC
ACTGTCAACTTGTACATCGGTCTCTTCTTCGGAATCTTGCTACCATTATT
GATCACGTGGGCTCATGTTATATTGGCAAATTTTGCTGTCTCCTCAAAAC
AATAAAAATCTTTACTTTAGTATTTTACCGTATATGAATTTTGTTAAAAA
ATTCAAAAAAAATTTTGACTTTGACTTAATATTTATCTTTTTAAACACTT
TGATATTTTGATATTTTTATTTTTTTGGACATTTTGAATACATTTTTATG
TATTTCATATATTTTATTGATGAGTAGACAAAACGCAAAAAATGACAGTA
AACATAATAGTAACGACACCCTGATTGACATTGACGACACATAATGAGAG
ACTATAAAGAATAAGAAAAGTGCATGGAAAAATCAAATTGAATGCAGAAA
GATATGCTAATCAGCAAAAAGACCTATGCGAAGAGAATTTGATAAAGACT
TTCAGATTCGAAACAGCAGCTCGGCAGAAATGAAAATGATGAGATGGACT
GACCTGGAGCTATGTTGAGAATTGATGAGAATTTATTGACGGAAGAAAAG
GACAAAATGAGATCAATGCTACGAGAACAGGTTAAACTGGGCACAATGAA
CAGCTTGTTTGAGGAGGATTTGACCGTTATACGATGATACGATGAATGGA
TAGCTAGGTTAATGTTGAAGAGATCTGGTGGACGTATAACGCTTGTAGAG
TTATGAAAAGGCTAACATATTCAGATTCACTCCTTTCTTATTTTCGATCA
ATAAATATTTGGTGAGGCAGATCGGGAAAAAATAAACGAGAGAATTAAAA
AGATGACGAAAATCAATTGAGAAAAGGATTACCATCGAGGAAAGTTGCTG
TATTGTAAATAGAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015173XLOC_015173Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027015-exon-sc0000600-1575043694:49441..49497TCONS_00027015-exon-sc0000600-1575043694:49441..49497Clytia hemisphaericaexon
TCONS_00027015-exon-sc0000600-1575043694:48569..48613TCONS_00027015-exon-sc0000600-1575043694:48569..48613Clytia hemisphaericaexon
TCONS_00027015-exon-sc0000600-1575043694:47143..48092TCONS_00027015-exon-sc0000600-1575043694:47143..48092Clytia hemisphaericaexon
TCONS_00027015-exon-sc0000600-1575043694:46167..46788TCONS_00027015-exon-sc0000600-1575043694:46167..46788Clytia hemisphaericaexon
TCONS_00027015-exon-sc0000600-1575043694:45597..45881TCONS_00027015-exon-sc0000600-1575043694:45597..45881Clytia hemisphaericaexon
TCONS_00027015-exon-sc0000600-1575043694:44281..45205TCONS_00027015-exon-sc0000600-1575043694:44281..45205Clytia hemisphaericaexon
TCONS_00027015-exon-sc0000600-1510915933:49441..49497TCONS_00027015-exon-sc0000600-1510915933:49441..49497Clytia hemisphaericaexon
TCONS_00027015-exon-sc0000600-1510915933:48569..48613TCONS_00027015-exon-sc0000600-1510915933:48569..48613Clytia hemisphaericaexon
TCONS_00027015-exon-sc0000600-1510915933:47143..48092TCONS_00027015-exon-sc0000600-1510915933:47143..48092Clytia hemisphaericaexon
TCONS_00027015-exon-sc0000600-1510915933:46167..46788TCONS_00027015-exon-sc0000600-1510915933:46167..46788Clytia hemisphaericaexon
TCONS_00027015-exon-sc0000600-1510915933:45597..45881TCONS_00027015-exon-sc0000600-1510915933:45597..45881Clytia hemisphaericaexon
TCONS_00027015-exon-sc0000600-1510915933:44281..45205TCONS_00027015-exon-sc0000600-1510915933:44281..45205Clytia hemisphaericaexon
TCONS_00027015-exon-sc0000600-1491911889:49441..49497TCONS_00027015-exon-sc0000600-1491911889:49441..49497Clytia hemisphaericaexon
TCONS_00027015-exon-sc0000600-1491911889:48569..48613TCONS_00027015-exon-sc0000600-1491911889:48569..48613Clytia hemisphaericaexon
TCONS_00027015-exon-sc0000600-1491911889:47143..48092TCONS_00027015-exon-sc0000600-1491911889:47143..48092Clytia hemisphaericaexon
TCONS_00027015-exon-sc0000600-1491911889:46167..46788TCONS_00027015-exon-sc0000600-1491911889:46167..46788Clytia hemisphaericaexon
TCONS_00027015-exon-sc0000600-1491911889:45597..45881TCONS_00027015-exon-sc0000600-1491911889:45597..45881Clytia hemisphaericaexon
TCONS_00027015-exon-sc0000600-1491911889:44281..45205TCONS_00027015-exon-sc0000600-1491911889:44281..45205Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000600supercontigsc0000600:44281..49497 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0265254	0.0646661	0.0750836	0.0881491	0.178855	0.113067	0.0511539	0.111743	0.122939	0.138436	0.188117	0.167825	0.0970267	0.137404	0.07531	0.218212	0.0995626	0	0.095368	0.453867	0.320578	0.243932	0.0456203	0.0414755	0.0996771	0.343129	0.327344	0.11645	0.0441617	0.0449938
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027015 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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