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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027009 ID=TCONS_00027009|Name=TCONS_00027009|organism=Clytia hemisphaerica|type=transcript|length=552bp
ATGCCAAGTTATTTGATTGTTGACTGGGCCGGTGAGAACTATTCGGATGT
TCTGTCAGCAGCAAAAGTTGCTGCACAAGATGGTATAGATGTTGGGAAAA
CTATACAAGTTCAAAATGGACAGGAAATATGGACTGGTGAAATTGCAAGC
ATTCATGCCTCCCAAAGCAAAGCAGAAAAAGCGTATCGTGAGCGTTTTCC
TAAAGCTTCATCAACACCAGCTGCTGATGGCAAACgccaaagaaagaaga
aaagttttggCGACGATTTTGAGGATGACGCAGCAGCAGAGAAAATAAAT
GAGGAACAATCAGAGGCATCAGAGAAGAAAATGGCACAGTCAGAAAAAGA
ACCGTCCGAAAAAGAACCGTctgaaaaggagaaaacaaaaacaGGGAAGA
TGAAAGTTAAAGCTGACAAGGAAAAAGCCAAAGCaaataaggaaaaagaa
aaggcaGAAAAGGAAAAAGCAAGAGCagagaaagaaaaggaaaaggaagC
AAAACAGAAAGAACGTGAAGAaagagagaagaagaaacaagaggaggaag
aa Run BLAST on NCBI protein sequence of TCONS_00027009-protein >TCONS_00027009-protein ID=TCONS_00027009-protein|Name=TCONS_00027009-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MPSYLIVDWAGENYSDVLSAAKVAAQDGIDVGKTIQVQNGQEIWTGEIAS
IHASQSKAEKAYRERFPKASSTPAADGKRQRKKKSFGDDFEDDAAAEKIN
EEQSEASEKKMAQSEKEPSEKEPSEKEKTKTGKMKVKADKEKAKANKEKE
KAEKEKARAEKEKEKEAKQKEREEREKKKQEEEE Run BLAST on NCBI transcript from alignment at sc0000600:146646..148388+ Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027009 ID=TCONS_00027009|Name=TCONS_00027009|organism=Clytia hemisphaerica|type=transcript|length=1743bp|location=Sequence derived from alignment at sc0000600:146646..148388+ (Clytia hemisphaerica)
ATGCCAAGTTATTTGATTGTTGACTGGGCCGGTGAGAACTATTCGGATGT
TCTGTCAGCAGCAAAAGTTGCTGCACAAGATGGTATAGATGTTGGGAAAA
CTATACAAGTTCAAAATGGACAGGAAATATGGACTGGTGAAATTGCAAGC
ATTCATGGTATATCCCTATCcctatgttttttttgttttagactcTAAAT
TATAGTTTAACTTACAGCCAGCTGTTTATTGCACTGTTTCGTTAGCATAG
TTAATATTGGGGTGTTCCAGAAATGAAATAAAGAGTGTCACACCCCCTAG
TGGACGACATAACATAGTTTTGTTACGGAAATCTTGGTATCGTTTAGACT
AAAGTAAAGGTGACATAATTCCAGAGATATCAGCCAAATCTTTGGACAGA
GCTAGTACCTTAagcttaaaggaagaaattttggcggaaagaaaatttgg
cggatttggcggatttgactgaaatccgccaaattaagttcccgccaaaa
tttcttttttccgccatccgccaaattaaatttccgccaaattaaacatt
ttgaaaatatgatctcttttgctattttttcgctgttttgacgccatctt
aaggttaaatttttaagcgaccgccaaattaaattcccgccaaatttagt
tttttcgtccatccgccaaattaaattccctctgaaaaaacttttttggc
cgtccgccaaattaaattcccgccaaatttagttttttcgtccatccgcc
aaattaaattccctctgaaaaaacttttttggccgtccgccaaattaaat
tcccgccaaaatttcttcctttaaggtattggAAATTTGCGTTTTTTGTA
ACAAAGAATTCCGTatattttgaaagctctttatAAAATAGTAAGGAAGA
TTTATATGTACTAAAAAGGCTGCCAGTTACAAATGACTTGTGTCATTTTC
ATGGTGAGAAAAATACACTCTGGACATGGCTATTATTGTTTAGACAGCAA
GAATCGTCTAGCTAGCATGTGGCCTGCAGTATATTCATTGTTACATGCAA
AGCGCTCGTAAACacaataaaactttgaaaaactgTGTAAGAATAAGCCG
TTTTAATACTCAATGATTACAAATAACATTTACCAGCACTAAATCACCAa
aaagttcttttaaaaattactGTATAAAATCCGACAAATTTCCCTAACTT
TCCGACTAAACGCTGTCAGATTTTTAGGATGAAAATTGAGTTGGTGGGAT
GTAgcaaacacaagttatttgtggttGAATTTAGGTTGCTTAGTAAGACT
AACTTTCTAGTCGGGTGTATATAAACTTGTATTGCACATTCCTTTTAGCC
TCCCAAAGCAAAGCAGAAAAAGCGTATCGTGAGCGTTTTCCTAAAGCTTC
ATCAACACCAGCTGCTGATGGCAAACgccaaagaaagaagaaaagttttg
gCGACGATTTTGAGGATGACGCAGCAGCAGAGAAAATAAATGAGGAACAA
TCAGAGGCATCAGAGAAGAAAATGGCACAGTCAGAAAAAGAACCGTCCGA
AAAAGAACCGTctgaaaaggagaaaacaaaaacaGGGAAGATGAAAGTTA
AAGCTGACAAGGAAAAAGCCAAAGCaaataaggaaaaagaaaaggcaGAA
AAGGAAAAAGCAAGAGCagagaaagaaaaggaaaaggaagCAAAACAGAA
AGAACGTGAAGAaagagagaagaagaaacaagaggaggaagaa Coding sequence (CDS) from alignment at sc0000600:146646..148388+ >TCONS_00027009 ID=TCONS_00027009|Name=TCONS_00027009|organism=Clytia hemisphaerica|type=CDS|length=1104bp|location=Sequence derived from alignment at sc0000600:146646..148388+ (Clytia hemisphaerica)
ATGCCAAGTTATTTGATTGTTGACTGGGCCGGTGAGAACTATTCGGATGT
TCTGTCAGCAGCAAAAGTTGCTGCACAAGATGGTATAGATGTTGGGAAAA
CTATACAAGTTCAAAATGGACAGGAAATATGGACTGGTGAAATTGCAAGC
ATTCATGCCTCCCAAAGCAAAGCAGAAAAAGCGTATCGTGAGCGTTTTCC
TAAAGCTTCATCAACACCAGCTGCTGATGGCAAACgccaaagaaagaaga
aaagttttggCGACGATTTTGAGGATGACGCAGCAGCAGAGAAAATAAAT
GAGGAACAATCAGAGGCATCAGAGAAGAAAATGGCACAGTCAGAAAAAGA
ACCGTCCGAAAAAGAACCGTctgaaaaggagaaaacaaaaacaGGGAAGA
TGAAAGTTAAAGCTGACAAGGAAAAAGCCAAAGCaaataaggaaaaagaa
aaggcaGAAAAGGAAAAAGCAAGAGCagagaaagaaaaggaaaaggaagC
AAAACAGAAAGAACGTGAAGAaagagagaagaagaaacaagaggaggaag
aaATGCCAAGTTATTTGATTGTTGACTGGGCCGGTGAGAACTATTCGGAT
GTTCTGTCAGCAGCAAAAGTTGCTGCACAAGATGGTATAGATGTTGGGAA
AACTATACAAGTTCAAAATGGACAGGAAATATGGACTGGTGAAATTGCAA
GCATTCATGCCTCCCAAAGCAAAGCAGAAAAAGCGTATCGTGAGCGTTTT
CCTAAAGCTTCATCAACACCAGCTGCTGATGGCAAACgccaaagaaagaa
gaaaagttttggCGACGATTTTGAGGATGACGCAGCAGCAGAGAAAATAA
ATGAGGAACAATCAGAGGCATCAGAGAAGAAAATGGCACAGTCAGAAAAA
GAACCGTCCGAAAAAGAACCGTctgaaaaggagaaaacaaaaacaGGGAA
GATGAAAGTTAAAGCTGACAAGGAAAAAGCCAAAGCaaataaggaaaaag
aaaaggcaGAAAAGGAAAAAGCAAGAGCagagaaagaaaaggaaaaggaa
gCAAAACAGAAAGAACGTGAAGAaagagagaagaagaaacaagaggagga
agaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027009-exon-sc0000600-1491911889:146646..146802 | TCONS_00027009-exon-sc0000600-1491911889:146646..146802 | Clytia hemisphaerica | exon |
| TCONS_00027009-exon-sc0000600-1510915933:146646..146802 | TCONS_00027009-exon-sc0000600-1510915933:146646..146802 | Clytia hemisphaerica | exon |
| TCONS_00027009-exon-sc0000600-1575043694:146646..146802 | TCONS_00027009-exon-sc0000600-1575043694:146646..146802 | Clytia hemisphaerica | exon |
| TCONS_00027009-exon-sc0000600-1491911889:147994..148388 | TCONS_00027009-exon-sc0000600-1491911889:147994..148388 | Clytia hemisphaerica | exon |
| TCONS_00027009-exon-sc0000600-1510915933:147994..148388 | TCONS_00027009-exon-sc0000600-1510915933:147994..148388 | Clytia hemisphaerica | exon |
| TCONS_00027009-exon-sc0000600-1575043694:147994..148388 | TCONS_00027009-exon-sc0000600-1575043694:147994..148388 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000600 | supercontig | sc0000600:146646..148388 + |
Blast
The following BLAST results are available for this feature:
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