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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026997 ID=TCONS_00026997|Name=TCONS_00026997|organism=Clytia hemisphaerica|type=transcript|length=1942bp
CTTATTGTTTACCGCAGTCgtgtttaaaattttacttagcTTAGTAACCG
AGCTCTATTTTATAGAACACGTAGTCTTACACTAGGAGTTACTAAGTTAC
TAATCTATGTTAACTTTTTTGTCAATAATATTCTCATTATCATTCTTTGT
TGTCGTGAACACAAACTTTATCTAttctcattttctttatttttcagaaa
gaaaaaaattaacgatagaaaacaaaaatcatttagaatcgaaaacaaca
acaaatatcTATTGTGGATAATCTTTGGTTGTCTTTGTGGCTATACTGGT
TGAAAAGGTATTCAAATATTTGAATCCTTGTTGATTTGAATTTTCGAATT
GGAAGAAGATTAGCGACAAACATATCGttgttttgggattttacaTTTGG
AGTTAATAAGCATTGGATTTTAATTGGTAAACCTTGAGAGGATCAAGTGT
TATTTGGTGGTTTTGGATATTTACCAACCATATTCGTTCTGAGTATAATc
ttatattttaaaaagattcaaACCACCACTTTCTGGAAAttacatatata
tatatatctttaTACCGTCTTCGTCCTGAGTTTATTCTGAAATAATTGCA
ATAAACACTTTTTGAAATTACGTATTGAAGAATAAATTATGGCTGGTAAT
TTTTGGTTATCTTCACACCGTCAACAATGGTTGCTAACACGCGAAGAACT
ATCTTCAGAAATTTCTAATGATCTACGTTATCTAACTACTGAAGAATATC
AAAAGCTTCATATCTTTTTTTCTCACTTTATACAAAGTCTCGGCGAATGT
ATGAAACTACGTCAGCAAGTTATCGCGACGGCTATTGTCTATTTTCGACG
TTTTTATACACGGATTTCTTTTAAAAGTGTCGATCCCCTGTTACTGGCAC
CAACTTGTATCTACGTCGCTTGTAAGGTCGAAGAATATGGTCCAGCACCC
AATTCTCGTTTCCTCAACTTCTGTACAAACGTATGCAAATCGAAATTCAG
TTACGTTTTTCCGACTGAGTTCCCGTACCGTATTAACCAGATTTTAGAAT
GTGAATTTTATTTATTGGAAGTTATGGACTGTTGTCTGATTGTATTTCAT
CCTTATAGACCTTTAACTAAATATGTTACTGATATGGGTCAAGAATCGAA
TATAATGCAGTTTGCTTGGAAAGTCTGTAATGATTGTTTACGCTCTGAAA
TTCCTTTACTTTTCCCGCCCTACCTCATAGCTTTGTCTGCCATTTACATG
GCGTGTGTTTTCGAAAAACGTGATTGCCAGCAATGGTTTGGTGAACTGAA
TGTGGATATGGATCGCGTTTTAGAAGTTGTTCGTGAAATTTTAACTTTGT
ATGAATTATGGAAAGGTTTTGATGAAAAGAAGGAAGTACCCTTATTAATT
AAGAAGATGCCCAAACCTAAAAGTGCACCTAATTCAAGACCATCGTCGGC
CACGCCCATGTTGAGACAACACACGCCTTCACCTAATCTGCAATGATGAC
AACGCCCATCTCGAGGTAACACACGATCTCTTCCTTATCTGCAATGATGG
CAACGCTCATGTCGAAGAAACACACACCCTCACATTGAATACGATATAGC
CATGCCCATGCGGAGGCAACACAAGCCTTCACCTAATCTGCAACGATGGC
AAGGCCTATATCAAGGGCAACTCACGCCCTCTCCTTATCTGCAATATAGG
TCACGCCCATGTCAAGACGTTATTCTCCCTCGACTTATTTGCAATGAGGT
GTTGCCTATTGAAAAAGTCTGTTATTGTGTCTTATTGATTGACCGAACCC
AAAAGAAGCTAAAAGCTTTGATTGGACAAATCCATTCACATATTTTAATG
TGATCTGAAAATCAACTAACTGTCTATGCGATAATTTGCATTTATCTCCT
CCAATGAAGTGACGAATACAGTAGACTCTTGCTTAAtggaac Run BLAST on NCBI protein sequence of TCONS_00026997-protein >TCONS_00026997-protein ID=TCONS_00026997-protein|Name=TCONS_00026997-protein|organism=Clytia hemisphaerica|type=polypeptide|length=285bp
MAGNFWLSSHRQQWLLTREELSSEISNDLRYLTTEEYQKLHIFFSHFIQS
LGECMKLRQQVIATAIVYFRRFYTRISFKSVDPLLLAPTCIYVACKVEEY
GPAPNSRFLNFCTNVCKSKFSYVFPTEFPYRINQILECEFYLLEVMDCCL
IVFHPYRPLTKYVTDMGQESNIMQFAWKVCNDCLRSEIPLLFPPYLIALS
AIYMACVFEKRDCQQWFGELNVDMDRVLEVVREILTLYELWKGFDEKKEV
PLLIKKMPKPKSAPNSRPSSATPMLRQHTPSPNLQ Run BLAST on NCBI transcript from alignment at sc0000597:186102..188043 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026997 ID=TCONS_00026997|Name=TCONS_00026997|organism=Clytia hemisphaerica|type=transcript|length=1942bp|location=Sequence derived from alignment at sc0000597:186102..188043 (Clytia hemisphaerica)
gttccaTTAAGCAAGAGTCTACTGTATTCGTCACTTCATTGGAGGAGATA
AATGCAAATTATCGCATAGACAGTTAGTTGATTTTCAGATCACATTAAAA
TATGTGAATGGATTTGTCCAATCAAAGCTTTTAGCTTCTTTTGGGTTCGG
TCAATCAATAAGACACAATAACAGACTTTTTCAATAGGCAACACCTCATT
GCAAATAAGTCGAGGGAGAATAACGTCTTGACATGGGCGTGACCTATATT
GCAGATAAGGAGAGGGCGTGAGTTGCCCTTGATATAGGCCTTGCCATCGT
TGCAGATTAGGTGAAGGCTTGTGTTGCCTCCGCATGGGCATGGCTATATC
GTATTCAATGTGAGGGTGTGTGTTTCTTCGACATGAGCGTTGCCATCATT
GCAGATAAGGAAGAGATCGTGTGTTACCTCGAGATGGGCGTTGTCATCAT
TGCAGATTAGGTGAAGGCGTGTGTTGTCTCAACATGGGCGTGGCCGACGA
TGGTCTTGAATTAGGTGCACTTTTAGGTTTGGGCATCTTCTTAATTAATA
AGGGTACTTCCTTCTTTTCATCAAAACCTTTCCATAATTCATACAAAGTT
AAAATTTCACGAACAACTTCTAAAACGCGATCCATATCCACATTCAGTTC
ACCAAACCATTGCTGGCAATCACGTTTTTCGAAAACACACGCCATGTAAA
TGGCAGACAAAGCTATGAGGTAGGGCGGGAAAAGTAAAGGAATTTCAGAG
CGTAAACAATCATTACAGACTTTCCAAGCAAACTGCATTATATTCGATTC
TTGACCCATATCAGTAACATATTTAGTTAAAGGTCTATAAGGATGAAATA
CAATCAGACAACAGTCCATAACTTCCAATAAATAAAATTCACATTCTAAA
ATCTGGTTAATACGGTACGGGAACTCAGTCGGAAAAACGTAACTGAATTT
CGATTTGCATACGTTTGTACAGAAGTTGAGGAAACGAGAATTGGGTGCTG
GACCATATTCTTCGACCTTACAAGCGACGTAGATACAAGTTGGTGCCAGT
AACAGGGGATCGACACTTTTAAAAGAAATCCGTGTATAAAAACGTCGAAA
ATAGACAATAGCCGTCGCGATAACTTGCTGACGTAGTTTCATACATTCGC
CGAGACTTTGTATAAAGTGAGAAAAAAAGATATGAAGCTTTTGATATTCT
TCAGTAGTTAGATAACGTAGATCATTAGAAATTTCTGAAGATAGTTCTTC
GCGTGTTAGCAACCATTGTTGACGGTGTGAAGATAACCAAAAATTACCAG
CCATAATTTATTCTTCAATACGTAATTTCAAAAAGTGTTTATTGCAATTA
TTTCAGAATAAACTCAGGACGAAGACGGTAtaaagatatatatatatatg
taaTTTCCAGAAAGTGGTGGTttgaatctttttaaaatataagATTATAC
TCAGAACGAATATGGTTGGTAAATATCCAAAACCACCAAATAACACTTGA
TCCTCTCAAGGTTTACCAATTAAAATCCAATGCTTATTAACTCCAAAtgt
aaaatcccaaaacaaCGATATGTTTGTCGCTAATCTTCTTCCAATTCGAA
AATTCAAATCAACAAGGATTCAAATATTTGAATACCTTTTCAACCAGTAT
AGCCACAAAGACAACCAAAGATTATCCACAATAgatatttgttgttgttt
tcgattctaaatgatttttgttttctatcgttaatttttttctttctgaa
aaataaagaaaatgagaaTAGATAAAGTTTGTGTTCACGACAACAAAGAA
TGATAATGAGAATATTATTGACAAAAAAGTTAACATAGATTAGTAACTTA
GTAACTCCTAGTGTAAGACTACGTGTTCTATAAAATAGAGCTCGGTTACT
AAgctaagtaaaattttaaacacGACTGCGGTAAACAATAAG Coding sequence (CDS) from alignment at sc0000597:186102..188043 >TCONS_00026997 ID=TCONS_00026997|Name=TCONS_00026997|organism=Clytia hemisphaerica|type=CDS|length=858bp|location=Sequence derived from alignment at sc0000597:186102..188043 (Clytia hemisphaerica)
TCATTGCAGATTAGGTGAAGGCGTGTGTTGTCTCAACATGGGCGTGGCCG
ACGATGGTCTTGAATTAGGTGCACTTTTAGGTTTGGGCATCTTCTTAATT
AATAAGGGTACTTCCTTCTTTTCATCAAAACCTTTCCATAATTCATACAA
AGTTAAAATTTCACGAACAACTTCTAAAACGCGATCCATATCCACATTCA
GTTCACCAAACCATTGCTGGCAATCACGTTTTTCGAAAACACACGCCATG
TAAATGGCAGACAAAGCTATGAGGTAGGGCGGGAAAAGTAAAGGAATTTC
AGAGCGTAAACAATCATTACAGACTTTCCAAGCAAACTGCATTATATTCG
ATTCTTGACCCATATCAGTAACATATTTAGTTAAAGGTCTATAAGGATGA
AATACAATCAGACAACAGTCCATAACTTCCAATAAATAAAATTCACATTC
TAAAATCTGGTTAATACGGTACGGGAACTCAGTCGGAAAAACGTAACTGA
ATTTCGATTTGCATACGTTTGTACAGAAGTTGAGGAAACGAGAATTGGGT
GCTGGACCATATTCTTCGACCTTACAAGCGACGTAGATACAAGTTGGTGC
CAGTAACAGGGGATCGACACTTTTAAAAGAAATCCGTGTATAAAAACGTC
GAAAATAGACAATAGCCGTCGCGATAACTTGCTGACGTAGTTTCATACAT
TCGCCGAGACTTTGTATAAAGTGAGAAAAAAAGATATGAAGCTTTTGATA
TTCTTCAGTAGTTAGATAACGTAGATCATTAGAAATTTCTGAAGATAGTT
CTTCGCGTGTTAGCAACCATTGTTGACGGTGTGAAGATAACCAAAAATTA
CCAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026997-exon-sc0000597-1491911889:186102..188043 | TCONS_00026997-exon-sc0000597-1491911889:186102..188043 | Clytia hemisphaerica | exon |
| TCONS_00026997-exon-sc0000597-1510915933:186102..188043 | TCONS_00026997-exon-sc0000597-1510915933:186102..188043 | Clytia hemisphaerica | exon |
| TCONS_00026997-exon-sc0000597-1575043694:186102..188043 | TCONS_00026997-exon-sc0000597-1575043694:186102..188043 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000597 | supercontig | sc0000597:186102..188043 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00026997 vs. Swiss-Prot (Human)
Match: CCNC (Cyclin-C OS=Homo sapiens GN=CCNC PE=1 SV=2) HSP 1 Score: 345.895 bits (886), Expect = 1.478e-113 Identity = 157/271 (57.93%), Postives = 213/271 (78.60%), Query Frame = 3
Query: 639 MAGNFWLSSHRQQWLLTREELSSEISNDLRYLTTEEYQKLHIFFSHFIQSLGECMKLRQQVIATAIVYFRRFYTRISFKSVDPLLLAPTCIYVACKVEEYGPAPNSRFLNFCTNVCKSKFSYVFPTEFPYRINQILECEFYLLEVMDCCLIVFHPYRPLTKYVTDMGQESNIMQFAWKVCNDCLRSEIPLLFPPYLIALSAIYMACVFEKRDCQQWFGELNVDMDRVLEVVREILTLYELWKGFDEKKEVPLLIKKMPKPKSAPNSRPSSA 1451
MAGNFW SSH QW+L +++L E DL++L+ EEY KL IFF++ IQ+LGE +KLRQQVIATA VYF+RFY R S KS+DP+L+APTC+++A KVEE+G N+R + T+V K++FSY FP EFPYR+N ILECEFYLLE+MDCCLIV+HPYRPL +YV DMGQE ++ AW++ ND R+++ LL+PP++IAL+ +++ACV +++D +QWF EL+VDM+++LE++R IL LYE WK FDE+KE+ ++ KMPKPK PNS
Sbjct: 1 MAGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERKEMATILSKMPKPKPPPNSEGEQG 271
The following BLAST results are available for this feature:
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