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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026996 ID=TCONS_00026996|Name=TCONS_00026996|organism=Clytia hemisphaerica|type=transcript|length=1413bp
TGAGGCCCTGGTATGAAATAATTGGGAAATTATGAAGCCCTCtggataaa
aagaaaaagaagaggatTGGAGAGGAATAAATGTTGATTATCTAAAAAAA
ATGCTTGATGATATAATGTATGGTTTAAGAATCAGAGGCGAACATCGAAA
CTGGATCAAAATCGGGATGGCCTCCATCATAGTGTTGTTTCTGTTTTATT
TCATGAACGTTTTACCATCTTTGGGTGGACAACAAATCTTCCAGGGAGGA
GAACAATCGATGAAAACATGCAAATCAAAAGATCTGGCACACCTTACGAA
ATCACAAGTTTGTGAGTATACATATCGGTACCCGTTAACACCGGCTCAGG
AGACGTCCGGTGGTAAGAGTTATCGTATCGCAATTATAGCGGACCTTGAT
GAGGAGCGGTCTAAGGTACCTGGTGAGAAATATCAATGGCGTAGCTATAT
CAGATACGGTCATTTAACACATTATCGGGATGAGAAATACTCGATCACGT
GGGATGAAAAGTATACTCTCAAATCAAAGTTGAATGAAAAAGGGCGTGGG
TTTGAGTTATCAGAATTATGTGCTTTCAATGGGAAATTGTATACGGTAGA
TGATCGTACGGGTATTGTGTACCATCTGTACGGACACCAAGACGCCACTA
AGCCAGTCCCCTGGGTCATTTTACAAGACGGTGATGGTATGGATACTAAA
GGGTTCAAAGGTGAATGGATGACGGTTAAAGATGGCGCACTCTACGTAGG
AGGGCTTGGTAAAGAATGGACAACGAAGGAGGGTGATTTTGTTAATTATC
ATCCGTTATTTGTTAAAAGTATCAGCCCGGACGGGCAAGTGGTCCATCAT
AATTGGACtgataattatttaaagataagagCTAAAGCTGGCATTCGGTT
TCCAGGCTATATGATCCACGAGGCTGTTATGTGGAGCACTTTTAAACGGC
GCTGGTATTTCTTACCGCGTCGTATGTCGACTTTCAAGTATAATGACGTC
GATGATGAGCGCCATGGAaccaatgttttgatttcatgTGATACCGATTT
TAACGACATTGCGTTGGTCCATGTCGGAGAATTAGATCCGACACACGGTT
TTTCGTCGTTTAAGTTTATCCCTGGGACGGATGATGACGTGGCGGTCGCG
TTAAAGTCACGCGAAGTTGACGGCGACATTTCGAGTTTTATTATGGTATT
CAATGTTGAGACGGGTCACGTGCTCTTACCAGAAACTAAAATTGCGACGG
ATAAGTTCGAGGGAATCGAATTTATTTAGTTAGTTTGTTTTTACTTAGGA
AGAATTTTTTTAGGCGTTAGAGATTCATTGAATAGTATTTTTGTAtgtga
atgaatgaatttatTTTAGGCATGAACTATTCAAACGtagttattttttg
aataagttctttt Run BLAST on NCBI protein sequence of TCONS_00026996-protein >TCONS_00026996-protein ID=TCONS_00026996-protein|Name=TCONS_00026996-protein|organism=Clytia hemisphaerica|type=polypeptide|length=392bp
MLDDIMYGLRIRGEHRNWIKIGMASIIVLFLFYFMNVLPSLGGQQIFQGG
EQSMKTCKSKDLAHLTKSQVCEYTYRYPLTPAQETSGGKSYRIAIIADLD
EERSKVPGEKYQWRSYIRYGHLTHYRDEKYSITWDEKYTLKSKLNEKGRG
FELSELCAFNGKLYTVDDRTGIVYHLYGHQDATKPVPWVILQDGDGMDTK
GFKGEWMTVKDGALYVGGLGKEWTTKEGDFVNYHPLFVKSISPDGQVVHH
NWTDNYLKIRAKAGIRFPGYMIHEAVMWSTFKRRWYFLPRRMSTFKYNDV
DDERHGTNVLISCDTDFNDIALVHVGELDPTHGFSSFKFIPGTDDDVAVA
LKSREVDGDISSFIMVFNVETGHVLLPETKIATDKFEGIEFI Run BLAST on NCBI transcript from alignment at sc0000597:183835..185247 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026996 ID=TCONS_00026996|Name=TCONS_00026996|organism=Clytia hemisphaerica|type=transcript|length=1413bp|location=Sequence derived from alignment at sc0000597:183835..185247 (Clytia hemisphaerica)
aaaagaacttattcaaaaaataactaCGTTTGAATAGTTCATGCCTAAAa
taaattcattcattcacaTACAAAAATACTATTCAATGAATCTCTAACGC
CTAAAAAAATTCTTCCTAAGTAAAAACAAACTAACTAAATAAATTCGATT
CCCTCGAACTTATCCGTCGCAATTTTAGTTTCTGGTAAGAGCACGTGACC
CGTCTCAACATTGAATACCATAATAAAACTCGAAATGTCGCCGTCAACTT
CGCGTGACTTTAACGCGACCGCCACGTCATCATCCGTCCCAGGGATAAAC
TTAAACGACGAAAAACCGTGTGTCGGATCTAATTCTCCGACATGGACCAA
CGCAATGTCGTTAAAATCGGTATCAcatgaaatcaaaacattggtTCCAT
GGCGCTCATCATCGACGTCATTATACTTGAAAGTCGACATACGACGCGGT
AAGAAATACCAGCGCCGTTTAAAAGTGCTCCACATAACAGCCTCGTGGAT
CATATAGCCTGGAAACCGAATGCCAGCTTTAGctcttatctttaaataat
tatcaGTCCAATTATGATGGACCACTTGCCCGTCCGGGCTGATACTTTTA
ACAAATAACGGATGATAATTAACAAAATCACCCTCCTTCGTTGTCCATTC
TTTACCAAGCCCTCCTACGTAGAGTGCGCCATCTTTAACCGTCATCCATT
CACCTTTGAACCCTTTAGTATCCATACCATCACCGTCTTGTAAAATGACC
CAGGGGACTGGCTTAGTGGCGTCTTGGTGTCCGTACAGATGGTACACAAT
ACCCGTACGATCATCTACCGTATACAATTTCCCATTGAAAGCACATAATT
CTGATAACTCAAACCCACGCCCTTTTTCATTCAACTTTGATTTGAGAGTA
TACTTTTCATCCCACGTGATCGAGTATTTCTCATCCCGATAATGTGTTAA
ATGACCGTATCTGATATAGCTACGCCATTGATATTTCTCACCAGGTACCT
TAGACCGCTCCTCATCAAGGTCCGCTATAATTGCGATACGATAACTCTTA
CCACCGGACGTCTCCTGAGCCGGTGTTAACGGGTACCGATATGTATACTC
ACAAACTTGTGATTTCGTAAGGTGTGCCAGATCTTTTGATTTGCATGTTT
TCATCGATTGTTCTCCTCCCTGGAAGATTTGTTGTCCACCCAAAGATGGT
AAAACGTTCATGAAATAAAACAGAAACAACACTATGATGGAGGCCATCCC
GATTTTGATCCAGTTTCGATGTTCGCCTCTGATTCTTAAACCATACATTA
TATCATCAAGCATTTTTTTTAGATAATCAACATTTATTCCTCTCCAatcc
tcttctttttctttttatccaGAGGGCTTCATAATTTCCCAATTATTTCA
TACCAGGGCCTCA Coding sequence (CDS) from alignment at sc0000597:183835..185247 >TCONS_00026996 ID=TCONS_00026996|Name=TCONS_00026996|organism=Clytia hemisphaerica|type=CDS|length=1179bp|location=Sequence derived from alignment at sc0000597:183835..185247 (Clytia hemisphaerica)
CTAAATAAATTCGATTCCCTCGAACTTATCCGTCGCAATTTTAGTTTCTG
GTAAGAGCACGTGACCCGTCTCAACATTGAATACCATAATAAAACTCGAA
ATGTCGCCGTCAACTTCGCGTGACTTTAACGCGACCGCCACGTCATCATC
CGTCCCAGGGATAAACTTAAACGACGAAAAACCGTGTGTCGGATCTAATT
CTCCGACATGGACCAACGCAATGTCGTTAAAATCGGTATCAcatgaaatc
aaaacattggtTCCATGGCGCTCATCATCGACGTCATTATACTTGAAAGT
CGACATACGACGCGGTAAGAAATACCAGCGCCGTTTAAAAGTGCTCCACA
TAACAGCCTCGTGGATCATATAGCCTGGAAACCGAATGCCAGCTTTAGct
cttatctttaaataattatcaGTCCAATTATGATGGACCACTTGCCCGTC
CGGGCTGATACTTTTAACAAATAACGGATGATAATTAACAAAATCACCCT
CCTTCGTTGTCCATTCTTTACCAAGCCCTCCTACGTAGAGTGCGCCATCT
TTAACCGTCATCCATTCACCTTTGAACCCTTTAGTATCCATACCATCACC
GTCTTGTAAAATGACCCAGGGGACTGGCTTAGTGGCGTCTTGGTGTCCGT
ACAGATGGTACACAATACCCGTACGATCATCTACCGTATACAATTTCCCA
TTGAAAGCACATAATTCTGATAACTCAAACCCACGCCCTTTTTCATTCAA
CTTTGATTTGAGAGTATACTTTTCATCCCACGTGATCGAGTATTTCTCAT
CCCGATAATGTGTTAAATGACCGTATCTGATATAGCTACGCCATTGATAT
TTCTCACCAGGTACCTTAGACCGCTCCTCATCAAGGTCCGCTATAATTGC
GATACGATAACTCTTACCACCGGACGTCTCCTGAGCCGGTGTTAACGGGT
ACCGATATGTATACTCACAAACTTGTGATTTCGTAAGGTGTGCCAGATCT
TTTGATTTGCATGTTTTCATCGATTGTTCTCCTCCCTGGAAGATTTGTTG
TCCACCCAAAGATGGTAAAACGTTCATGAAATAAAACAGAAACAACACTA
TGATGGAGGCCATCCCGATTTTGATCCAGTTTCGATGTTCGCCTCTGATT
CTTAAACCATACATTATATCATCAAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026996-exon-sc0000597-1491911889:183835..185247 | TCONS_00026996-exon-sc0000597-1491911889:183835..185247 | Clytia hemisphaerica | exon |
| TCONS_00026996-exon-sc0000597-1510915933:183835..185247 | TCONS_00026996-exon-sc0000597-1510915933:183835..185247 | Clytia hemisphaerica | exon |
| TCONS_00026996-exon-sc0000597-1575043694:183835..185247 | TCONS_00026996-exon-sc0000597-1575043694:183835..185247 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000597 | supercontig | sc0000597:183835..185247 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009283 | Apyrase |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005509 | calcium ion binding |
| GO:0017110 | nucleoside-diphosphatase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005509 |
calcium ion binding |
| molecular_function |
GO:0017110 |
nucleoside-diphosphatase activity |
Blast
BLAST of TCONS_00026996 vs. Swiss-Prot (Human)
Match: CANT1 (Soluble calcium-activated nucleotidase 1 OS=Homo sapiens GN=CANT1 PE=1 SV=1) HSP 1 Score: 350.903 bits (899), Expect = 3.503e-116 Identity = 182/331 (54.98%), Postives = 228/331 (68.88%), Query Frame = 2
Query: 293 LTKSQVCEYTYRYPLTPAQETSGGKSYRIAIIADLD-EERSKVPGEKYQWRSYIRYGHLT-HYRDEKYSITWDEKY-TLKSKLNEKGRGFELSELCAFNGKLYTVDDRTGIVYHLYGHQDATKPVPWVILQDGDGMDTKGFKGEWMTVKDGALYVGGLGKEWTTKEGDFVNYHPLFVKSISPDGQVVHHNWTDNYLKIRAKAGIRFPGYMIHEAVMWSTFKRRWYFLPRRMSTFKYNDVDDERHGTNVLISCDTDFNDIALVHVGELDPTHGFSSFKFIPGTDDDVAVALKSREVDGDISSFIMVFNVETGHVLLPETKIATDKFEGIEFI 1276
L ++ Y YPL+P Q T G YRIA+IADLD E R++ E+ W SY++ G+LT +K ++ WD+ + L+S L EKGRG ELS+L FNGKLY+VDDRTG+VY + G +K VPWVIL DGDG KGFK EW+ VKD LYVGGLGKEWTT GD VN +P +VK + G V H NW NY +RA AGI+ PGY+IHE+ WS +RW+FLPRR S +Y++ DDER G N+L+S DF DIA+ HVG + PTHGFSSFKFIP TDD + VALKS E G ++S+IM F ++ G LLPETKI + K+EGIEFI
Sbjct: 79 LGQAPANWYNDTYPLSPPQRTPAGIRYRIAVIADLDTESRAQ---EENTWFSYLKKGYLTLSDSGDKVAVEWDKDHGVLESHLAEKGRGMELSDLIVFNGKLYSVDDRTGVVYQIEG----SKAVPWVILSDGDGTVEKGFKAEWLAVKDERLYVGGLGKEWTTTTGDVVNENPEWVKVVGYKGSVDHENWVSNYNALRAAAGIQPPGYLIHESACWSDTLQRWFFLPRRASQERYSEKDDERKGANLLLSASPDFGDIAVSHVGAVVPTHGFSSFKFIPNTDDQIIVALKSEEDSGRVASYIMAFTLD-GRFLLPETKIGSVKYEGIEFI 401
The following BLAST results are available for this feature:
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