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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026986 ID=TCONS_00026986|Name=TCONS_00026986|organism=Clytia hemisphaerica|type=transcript|length=1926bp
aaaataaaataaataagagCGTCTACCTACAATGTACagtaaaaatttcg
tttttaaggtaaaataaaaaaataatcctATCTATGGGGCTATGGGGCCT
ATCCATGCATAACTGGAGACCACTTCAGGCAACTCTAGCACTACAGGTAA
TCCTGATAGGAGGGAAATCGCCCTAAAAAGGGGGAATGGAAAGGGGACCA
AAAGGAAAGGTAGGCAAAAAAAATGTGATAAAGTCAAAAAGACCCTGACC
TACACTACACTAACAAAATATACATAAAATATAAGTTTCGTTTTAATTAT
CATGaatatattttaatatattttaatgtttaaaaactgaaaatagaCAG
CCTCAATCATACCGACAAGCCAGAAAAGGGGCTAAAGGAACTGGCGAGCT
AAAGGACTGGCAAGGAGTATAAACCTCAAGGAAAGAATGTGACCAAACAA
AGGGAGAAGGAGGAGACTAAGGGAGGTTGTGAACTACTAGCGAAAGAAAG
GGGAGTGGACCGGGAGTGGAGCAGGGGAAATTCACAACCTCAACACGTTC
TCCTCCAACTTAGCTCTAAATAAAATCCTATTTTCTAACAAGTGCCAATT
ACCAATCAAGTCCACACAATAGTCAACCTCAACCGATGGTTCTGCAACAA
TAGATTTAACGTTTCTCTTAACATAATTTTTGTctaataaaacatgaaaa
atgtcCAGGTTCAAACAGTTCACTGTGATGTTTGCTGAGTAGGTGAAACT
ATGGGATATGTTGTCCCCAGACGACAACATATGGTGCATGTATGAAGCTA
TTGAGGGATTCTTGATTGCCTGGTGAAGAAGTGACAATTTGCGTTTGTTG
ATTTGAGTGGTAACATCTTGGAGGTTGAAGATAGTGCTCAGGAGGTTCCT
CGATTTTTTGGACATACCAGAAAGCGCCTTTAAGCATATGCGGGCTTGCG
TGTTCAATAAGACTGTATCTGACTTATTCAGATATTAACAAGTTCGAGAC
CATATAGTAGCTTGGGAATAACGATGGATGTAAATATGGTCACGATCTGG
TTTGGATGACATTTTCGGATTCCAGCACTGATGAGGGAGGTAGTCACTGA
CCACATGCATGCTATGCAATCCAACATATGTCTTTTGAGAGATAGAATGT
TTTTATCAATCTCCCATTGAAAACCAAGGTGCTTTAGGGTCTCCTGCTTC
TGAACGACAGTGTTGTTGAATCGAATGACGGGATTACTGATAGGTGGTTT
GCCGGATATTGCGAACTGAGTTTTGATCTGATTGTATTTGAGGCCTTTAT
TAACACCGTGATCAATACAATGATCAATCATCTTTTGAAGGTGAGAGAGA
GTAGGACTCATTAGTATAATGTCGTCGGCATATGCGATAATTCCCGTGTG
GAGATTGCTTGGCAAGAAGGTTCAAATCTGTAGAGATTTCACATGGAGAA
GGAGATCTTCAATGTAAATGCTGTACAGAAAAGGAGATAAAATACTTCCT
TGGCGGACGCCTTGGGTCATACAAGTTCTTTTGAGTAATTCGCGGCGTAG
TGGANTTCACATGGAGAAGGAGATCTTCAATGTAAATGCTGTACAGAAAA
GGAGATAAAATACTTCCTTGGCGGACGCCTTGGGTCAATACAAGTTCTTT
TGAGTAATTCGCGGCGTAGTGGACTATAGCAGAACCATTCAAATAAAGTT
TTATCAACATGGCTAGGACCTGGTTTGGAATGTCCCTATTTTGCAGTTTG
GAGAAAAGGGTGTACCAATTACACGAATCAAACGCCTTTTCCGCGTCCAG
GCTGCATACATATACAGAACTGCCTCGACTGTTGTAATATTTCAAGGTGT
CTGAGATCAATAGTTCTGCATGAAGGGTTGATGAACCAGCCACAAAACCA
AATTGAGAGTCTGTGTGGTTAGAGAT Run BLAST on NCBI protein sequence of TCONS_00026986-protein >TCONS_00026986-protein ID=TCONS_00026986-protein|Name=TCONS_00026986-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
ISNHTDSQFGFVAGSSTLHAELLISDTLKYYNSRGSSVYVCSLDAEKAFD
SCNWYTLFSKLQNRDIPNQVLAMLIKLYLNGSAIVHYAANYSKELVLTQG
VRQGSILSPFLYSIYIEDLLLHVXSTTPRITQKNLYDPRRPPRKYFISFS
VQHLH Run BLAST on NCBI transcript from alignment at sc0000597:120006..121931 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026986 ID=TCONS_00026986|Name=TCONS_00026986|organism=Clytia hemisphaerica|type=transcript|length=1926bp|location=Sequence derived from alignment at sc0000597:120006..121931 (Clytia hemisphaerica)
ATCTCTAACCACACAGACTCTCAATTTGGTTTTGTGGCTGGTTCATCAAC
CCTTCATGCAGAACTATTGATCTCAGACACCTTGAAATATTACAACAGTC
GAGGCAGTTCTGTATATGTATGCAGCCTGGACGCGGAAAAGGCGTTTGAT
TCGTGTAATTGGTACACCCTTTTCTCCAAACTGCAAAATAGGGACATTCC
AAACCAGGTCCTAGCCATGTTGATAAAACTTTATTTGAATGGTTCTGCTA
TAGTCCACTACGCCGCGAATTACTCAAAAGAACTTGTATTGACCCAAGGC
GTCCGCCAAGGAAGTATTTTATCTCCTTTTCTGTACAGCATTTACATTGA
AGATCTCCTTCTCCATGTGAANTCCACTACGCCGCGAATTACTCAAAAGA
ACTTGTATGACCCAAGGCGTCCGCCAAGGAAGTATTTTATCTCCTTTTCT
GTACAGCATTTACATTGAAGATCTCCTTCTCCATGTGAAATCTCTACAGA
TTTGAACCTTCTTGCCAAGCAATCTCCACACGGGAATTATCGCATATGCC
GACGACATTATACTAATGAGTCCTACTCTCTCTCACCTTCAAAAGATGAT
TGATCATTGTATTGATCACGGTGTTAATAAAGGCCTCAAATACAATCAGA
TCAAAACTCAGTTCGCAATATCCGGCAAACCACCTATCAGTAATCCCGTC
ATTCGATTCAACAACACTGTCGTTCAGAAGCAGGAGACCCTAAAGCACCT
TGGTTTTCAATGGGAGATTGATAAAAACATTCTATCTCTCAAAAGACATA
TGTTGGATTGCATAGCATGCATGTGGTCAGTGACTACCTCCCTCATCAGT
GCTGGAATCCGAAAATGTCATCCAAACCAGATCGTGACCATATTTACATC
CATCGTTATTCCCAAGCTACTATATGGTCTCGAACTTGTTAATATCTGAA
TAAGTCAGATACAGTCTTATTGAACACGCAAGCCCGCATATGCTTAAAGG
CGCTTTCTGGTATGTCCAAAAAATCGAGGAACCTCCTGAGCACTATCTTC
AACCTCCAAGATGTTACCACTCAAATCAACAAACGCAAATTGTCACTTCT
TCACCAGGCAATCAAGAATCCCTCAATAGCTTCATACATGCACCATATGT
TGTCGTCTGGGGACAACATATCCCATAGTTTCACCTACTCAGCAAACATC
ACAGTGAACTGTTTGAACCTGgacatttttcatgttttattagACAAAAA
TTATGTTAAGAGAAACGTTAAATCTATTGTTGCAGAACCATCGGTTGAGG
TTGACTATTGTGTGGACTTGATTGGTAATTGGCACTTGTTAGAAAATAGG
ATTTTATTTAGAGCTAAGTTGGAGGAGAACGTGTTGAGGTTGTGAATTTC
CCCTGCTCCACTCCCGGTCCACTCCCCTTTCTTTCGCTAGTAGTTCACAA
CCTCCCTTAGTCTCCTCCTTCTCCCTTTGTTTGGTCACATTCTTTCCTTG
AGGTTTATACTCCTTGCCAGTCCTTTAGCTCGCCAGTTCCTTTAGCCCCT
TTTCTGGCTTGTCGGTATGATTGAGGCTGtctattttcagtttttaaaca
ttaaaatatattaaaatatattCATGATAATTAAAACGAAACTTATATTT
TATGTATATTTTGTTAGTGTAGTGTAGGTCAGGGTCTTTTTGACTTTATC
ACATTTTTTTTGCCTACCTTTCCTTTTGGTCCCCTTTCCATTCCCCCTTT
TTAGGGCGATTTCCCTCCTATCAGGATTACCTGTAGTGCTAGAGTTGCCT
GAAGTGGTCTCCAGTTATGCATGGATAGGCCCCATAGCCCCATAGATagg
attatttttttattttaccttaaaaacgaaatttttactGTACATTGTAG
GTAGACGctcttatttattttatttt Coding sequence (CDS) from alignment at sc0000597:120006..121931 >TCONS_00026986 ID=TCONS_00026986|Name=TCONS_00026986|organism=Clytia hemisphaerica|type=CDS|length=468bp|location=Sequence derived from alignment at sc0000597:120006..121931 (Clytia hemisphaerica)
ATCTCTAACCACACAGACTCTCAATTTGGTTTTGTGGCTGGTTCATCAAC
CCTTCATGCAGAACTATTGATCTCAGACACCTTGAAATATTACAACAGTC
GAGGCAGTTCTGTATATGTATGCAGCCTGGACGCGGAAAAGGCGTTTGAT
TCGTGTAATTGGTACACCCTTTTCTCCAAACTGCAAAATAGGGACATTCC
AAACCAGGTCCTAGCCATGTTGATAAAACTTTATTTGAATGGTTCTGCTA
TAGTCCACTACGCCGCGAATTACTCAAAAGAACTTGTATTGACCCAAGGC
GTCCGCCAAGGAAGTATTTTATCTCCTTTTCTGTACAGCATTTACATTGA
AGATCTCCTTCTCCATGTGAANTCCACTACGCCGCGAATTACTCAAAAGA
ACTTGTATGACCCAAGGCGTCCGCCAAGGAAGTATTTTATCTCCTTTTCT
GTACAGCATTTACATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026986-exon-sc0000597-1491911889:120006..121931 | TCONS_00026986-exon-sc0000597-1491911889:120006..121931 | Clytia hemisphaerica | exon |
| TCONS_00026986-exon-sc0000597-1510915933:120006..121931 | TCONS_00026986-exon-sc0000597-1510915933:120006..121931 | Clytia hemisphaerica | exon |
| TCONS_00026986-exon-sc0000597-1575043694:120006..121931 | TCONS_00026986-exon-sc0000597-1575043694:120006..121931 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000597 | supercontig | sc0000597:120006..121931 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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