TCONS_00026981 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026981
Unique NameTCONS_00026981
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length804

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026981 ID=TCONS_00026981|Name=TCONS_00026981|organism=Clytia hemisphaerica|type=transcript|length=804bp
cggcgcatccctgtaacccattttgccctagtacccctccccctTTGGAA
TGATAACATATTTTGACGAGCTCCCACACGGCCTTTGTTATTTGTTTACA
GAAGTTAAAACGGTCTTTAAGGCTAATAATTAATCATTGATAGAAAATGA
ACCCCCGGGAGGGAGTACTTAAGTAAATGGAGAGTACGGGTAACCCCTTC
TAAGGGTCATAAAAATCACATTATCAGTAACAATTTCAGTCCGCTCAAGG
GTTACAATACAAACCAAAAACTGCAATATTTATCCCTAAAAAAGATAAGT
TGTAGAAAAAAAAGGCCCggtaagggtcccaaaattcattaaatttcGGT
TTTTTACTCGATTTTAGCACTTTAGATTTTATTCATCACCATTTTAACTT
TAATTCGCATGCTTgagtttgagttttttgaatGAAGGAGCCTGTTATTT
TCGAGCAAATTGAGCAAATTTTCGTTGTTAATCGTTTGTTTTAAGACCTC
TCATATTGTAACCAGCACTATTTAAAATAATTATTCCAGTTATTGTTGCC
CGTTGCACTAAGGCTCGCGAAGATCTGAGAGATACGTTGAAAATAGGATA
TCATCCTTCGTGAGTACTATTTAGGGGCTTAACTGATAGTCTGTAATTTA
AAATAATTACACTGTATTTATATTTCATTGCACTTATTATGAACCAAAAA
CGAAATCTATTTTAGCTGTATAAAATCATTTCAGAAAATGTACAGAGATG
GATATATGAATCTTGAAAATTTCCaacttaaaatttaatttatttgaaAT
GCAC
Run BLAST on NCBI

transcript from alignment at sc0000597:20211..21014

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026981 ID=TCONS_00026981|Name=TCONS_00026981|organism=Clytia hemisphaerica|type=transcript|length=804bp|location=Sequence derived from alignment at sc0000597:20211..21014 (Clytia hemisphaerica)
GTGCATttcaaataaattaaattttaagttGGAAATTTTCAAGATTCATA
TATCCATCTCTGTACATTTTCTGAAATGATTTTATACAGCTAAAATAGAT
TTCGTTTTTGGTTCATAATAAGTGCAATGAAATATAAATACAGTGTAATT
ATTTTAAATTACAGACTATCAGTTAAGCCCCTAAATAGTACTCACGAAGG
ATGATATCCTATTTTCAACGTATCTCTCAGATCTTCGCGAGCCTTAGTGC
AACGGGCAACAATAACTGGAATAATTATTTTAAATAGTGCTGGTTACAAT
ATGAGAGGTCTTAAAACAAACGATTAACAACGAAAATTTGCTCAATTTGC
TCGAAAATAACAGGCTCCTTCattcaaaaaactcaaactcAAGCATGCGA
ATTAAAGTTAAAATGGTGATGAATAAAATCTAAAGTGCTAAAATCGAGTA
AAAAACCgaaatttaatgaattttgggacccttaccGGGCCTTTTTTTTC
TACAACTTATCTTTTTTAGGGATAAATATTGCAGTTTTTGGTTTGTATTG
TAACCCTTGAGCGGACTGAAATTGTTACTGATAATGTGATTTTTATGACC
CTTAGAAGGGGTTACCCGTACTCTCCATTTACTTAAGTACTCCCTCCCGG
GGGTTCATTTTCTATCAATGATTAATTATTAGCCTTAAAGACCGTTTTAA
CTTCTGTAAACAAATAACAAAGGCCGTGTGGGAGCTCGTCAAAATATGTT
ATCATTCCAAagggggaggggtactagggcaaaatgggttacagggatgc
gccg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015147XLOC_015147Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026981-exon-sc0000597-1491911889:20211..21014TCONS_00026981-exon-sc0000597-1491911889:20211..21014Clytia hemisphaericaexon
TCONS_00026981-exon-sc0000597-1510915933:20211..21014TCONS_00026981-exon-sc0000597-1510915933:20211..21014Clytia hemisphaericaexon
TCONS_00026981-exon-sc0000597-1575043694:20211..21014TCONS_00026981-exon-sc0000597-1575043694:20211..21014Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000597supercontigsc0000597:20211..21014 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0847165	0.160819	0.127082	0.306637	0.28707	0.526829	0.248951	0	0.158844	0.159472	0.247097	0.0338579	0	0.134284	0.137637	0.253537	0.066327	0.345901	0.337437	0.0683665	0.12431	0.832238	0.971291	0.163519	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026981 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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