TCONS_00026969 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026969
Unique NameTCONS_00026969
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length947

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026969 ID=TCONS_00026969|Name=TCONS_00026969|organism=Clytia hemisphaerica|type=transcript|length=947bp
ttagAATACTAGTGagctaaattttgaaattttagatgATTTGGTTTTTG
AAAACTCTGTCAGCAAATAATTTTAGTCAAATGCCTATAATgtcaaaatt
ttaatcaaagAGTAGGAACTGAAATGAATTGGCTACCTTCATATTTATGg
TTTGTAATTCACTTCATCGATCTAGTAATTGGACGACTAGTCATTGAAAA
TCACCACATTTTCACCCAATGTCGCGAGGTGAAGGAAAATGTATTCCACG
ACCAAACAAATACTTTGACATTTATTAGCTCTTACAATTACAACGATAGC
AGCTGCGAAAGAAACTGCAATGATCATCAAGCATCGGTGCGGCTACTTTT
ACCATCTTTTCCCGCCTGTTTTTGTACGGATGACAAAAATATTGGAGAGC
TTTATAAGCAACATTATCTACCTTGTGACAATCAAGTGAATACAACATGT
GACATTATTTCAAAGGCGTGCCCCTTCGACTCGACGTTCACTATATCTGA
CATCaaaattcaaactttgaaagatGCTACAGTTTCGGTGGAACAAGAAA
TCGATTTTACTGGCTTTCAGAAAGAATGCTTGGAGTTCATGACGGCCCTT
TTAATGTTTCTGAAGACCAATTACATGATTTCAAAGTGAAGGCACCTGAC
TATGCTGCAGTTGGTGAAAGCTTTCATTGCACCATGAGTGTTGGACCTGC
TGTCGATTTCAGTGTCGTTTTCCGATTGGATTCCGAAATACAAGAatttg
aatcagCTGATGCTATCGAATTTGAATTAAAAGACAATCCAATGTATGGA
AGTATTACACATCAGGAGTGTGTTCAATCTTCAGTCTATAAGAATGATAC
AAAATCAGATGATGAAACATATGTTGCTGAAACAAGTCAGGATATGTTAG
ATGTTTGTGGCCAGAATGCTGACTTTCCAATCAATAGACCATTTCCG
Run BLAST on NCBI

transcript from alignment at sc0000597:103465..110559-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026969 ID=TCONS_00026969|Name=TCONS_00026969|organism=Clytia hemisphaerica|type=transcript|length=7095bp|location=Sequence derived from alignment at sc0000597:103465..110559- (Clytia hemisphaerica)
TTAGAATACTAGTGAGCTAAATTTTGAAATTTTAGATGATTTGGTTTTTG
AAAACTCTGTCAGCAAATAATTTTAGTCAAATGCCTATAATGTCAAAATT
TTAATCAAAGAGTAGGAACTGAAATGAATTGGCTACCTTCATATTTATGG
TACAGTATAAGATACAATTTAAAGAGTTTGAGATAATATTGGATCTGTAG
ATTACTTCTATGACCTTTTATGATCCTAAGCCGAACAATTTTAGCTTTAA
AATGTCATAAACAACAACGTTTATGGGCATAAAATCTCATGCGTAGTAAG
ATAATTACTGTCAACTGCTCTAACTTGGGACGATTGGTCGAAACATGGGA
CTGGTTGATGTCTGGCCTGTATTTTCACTTACTTTTAAATCTCTTTGACA
ACAAATTTGTATTTTGATAGCTCCACCAAGTTTATCAATCATACTTTTTC
GTTCCTCTTAGAGTGCACAGACACTCGCGTGTGTTCCACTACGGTTTTTT
TCATATTTCGATTTAAAAGCCTACTCGGTGCGAAAGAGAAATCGTGTATT
TTTTAATACGCCGTTCATTTACTCAAATCAAATGACTTTGGAGGTTCGGT
GAAATTGTGGCCGAATTGCCGTCCCATGTTTTGTCAGATAGTCCCAAGTT
AGAGCAGTTGACGGTAAAGGTTTTAAGAGAAATTTTCCAGGGGGCAAATT
TTGATCATTGATAATGAGGGTTTTCATTTATCTTTTTTTTAGCATAATGA
AGAATCTAATTTGTTTCCCAGGACCTTAATGGTTATAACTGGGTTAATTA
TACTTCATAGGCTAAAGTTTTAGTCTGTACGGATATTAATTTACATAGAT
TCTGACCTCTATTCACTTCATCACTTCATTCACTTCTATACGTTTTTTGT
CGTCCGCCAACAACAGTTTCTGCCCTTAAAGCTGTTTATAACATTTTCAT
CCGACTTGAAAAGTTATGTGAAATGTAAATTGGTAATTTTCCAAGGTTTT
TGCATGCTAAGGAGAGAGAATCGAACTACATCTCTGTACTACAAATGTCT
ACAAATGTAAATTTGATATTATTGATATATATTGAAACTTTTCGGCTTAA
GCCATCATCAGTTATCATGCAAGTAAAACCAATTGTAAATTTTTTTATAG
GTTTGTAATTCACTTCATCGATCTAGTAATTGGACGTAAGTTTAAATACT
TTATCTCTCACTCTTTCTTTATTCGCGTCTACTCGTTCGTCCGTCCGTCC
GTCCGTCCGTCCGTCCGTCCGTCCGTTCGTTCGTTCGTTCGTTCGTTCGT
TCGTTCGTTCGTTCGTTCGTTCGTTCGCTCGTTCGTCCGTTCGTTCGTTC
GTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGT
TCGTTCGTTCGCTCGCAACTTTTTTGTCATTCCCAGTTCAGTCTAACCGA
TGTACGGTCCTTATGATGAAACCAAGATAACTTATTCATCAGGTCGTGTA
TTTTCAACTATTGTAGGTTAACTAAGGGTCGATGTACTTGTTCTCTTATT
TGATTTAGGACTAGTCATTGAAAATCACCACATTTTCACCCAATGTCGCG
AGGTGAAGGAAAATGTATTCCACGACCAAACAAATACTTTGACATTTATT
AGCTCTTACAATTACAACGATAGCAGCTGCGAAAGAAACTGCAATGATCA
TCAAGCATCGGTGCGGCTACTTTTACCATCTTTTCCCGCCTGTTTTTGTA
CGGATGACAAAAATATTGGAGAGCTTTATAAGCAACATTATCTACCTTGT
GACAATCAAGTGAATACAACATGTGACATTATTTCAAAGGCGTGCCCCTT
CGACTCGACGTTCACTATATCTGACATCAAAATTCAAACTTTGAAAGATG
CTACAGTTTCGGTGGAACAAGAAATCGATTTTACTGGCTTTCAGAAAGGT
ACGTGTGTTTAGTCCGTTGGTAATTCATGATATTCATGACGTAATCTTTT
ATACGGAAGCACCCGAGATAACCCGGAACTAGTGGCAAAATAACAAAAGA
CTAGTGGAAAATTTTGCCACTAGTTCCGGATTATTTTGTGTGCTTCCGTA
TAAAAGATTACATCATGAATATCATGAATACACATTTTTTCTTTTATAGG
ATGTACTCTATGATGAAATTTTCACCATAATTTTCTTATTTTTTTGCATA
AAGATAAAGGGCAAGGTTTTTTTTTAGCGTGACTGAAGACGTTTTTTCTG
GGGATTTTTTTTCTTATTTGGGGGAAATTCCCTTTTGTCATTTTTAGGGG
AAATGAGCATTTCTCGAGATTTGGTATTTGTTTCAGATTTTTTGCACAAT
GATGTAAAATGGAAATTTTTAAAATTAGGAGCCTGATTTTCGAAAAACAA
ATTTGGGTTAAAAATTGCCTAAAAATTGGGATTTGTGGAAATTGTTTTAT
TAGATTTTACCTTTAAAGAGGTAGAGTTATCTTTACAAGAAAGAAAGGGT
TGTTTTTGTTTATGCCCAAAACTGAGCATGGTTTGATTTCAATTTTATAT
GGGACTCCTTAGCTCTAAAACATCGGAAAGCCAGCGTGAAACAAGTTTCA
TCATGTTTTTCAAGCTTTACGCATCTCTATGCTGTGTCTTTCCCTTTTCG
TTTGTACATTTTCATCTTCATTCAGTATGTTTCCTACTACCTATATCAGG
TAGGTCCATTCGGCATGTTGCTTGTTTAACTTAAAACTGCCAATTATTCT
GCTCTATATAGCCTGGTTTTAGTCTATAATTACCTTATCATTATTAGTTG
ACCCGGGCGAAAGTACATTCACTTGCAAAGTGAATTGTAGTTAACAAGGC
TGAAACGAGAAGAAGTCGAAGAACGGTTTCTACCAAAGAACTACAGTATG
CCTAATTATAATTATATTCACGATATTCATGATGTAATTTTTTCTACGGG
ATCATCCTGGTTTATACAATAGTAGTGGCAATTTAAGCTAGAGAAAAATT
GTTTAGAATTTGCCATTGCTGGCGAAAACCGAGGTGTTTTCTAAGAAAAT
ATTACGTAATGCATATTCATGATATGCACCACTGCAATGTCTTCTGACAT
TACGTCACGGAACCAATAGCTGATTGGTTGGAAGTGACGTAAAGTCAGTC
AATACGTCACTTACAACCAATCAGCTATTGGGTGGAACGGAAGACATTGC
TGGCGAAAACCGAGGTGTTTTCTAAGAAAATATTACGTAATGCATATTGA
GAAGTAAAGAACTAACTTACATAATGAATATTATGAATTCTAGTGCGAGA
ATCTATTCCATTTTAGATGACTTCACCAGCTTTCCCTATAGTTTTTGGAA
CGATGACATATCTCCGAGGATTGGCCGAATACCTAAATATTTTATGAATT
TTCGAATCAGCGGATGGCATCTGGTTTCTTATCAAGGCGAATCTGCTTTT
TTCAACACCAGAATGCTTGGAGTTCATGACGGCCCTTTTAATGTTTCTGA
AGACCAATTACATGATTTCAAAGTGAAGGTATTGTTCCTTTTTTAAATAG
AAATAAAACTCTTAGGTTGTCAAAACCGTAGTGCAGTGGTAGAGCATCAA
GCTACAGTGCGCAAGGTTGTGACTTCGTATTTAATACAAAAATGGTACTT
GATGCCTCTAAAAAGCCCGATGTTCAGCAATTAAGAGAAGAATCAAGAGT
AGGTGGAGCAATTGGAGAAAGAGAGGCGCCCTCCTCTACCTTAGGGTAGA
TAGCTATTAAAAGAGGAGCCGTCGGGGCACCTCCGACTGCGGTCTTAGTC
TTATTCACTACTTCATTTTAAAGATCAAGAGTAGGTGGAGCAATCGGAGA
AAGATAGGCGACCTCCCCTACCTTAGAGTAGATAGCTATCGAAAGAGGAA
GGCCCCGACTGCGGTCGTAGACTCACTCAGACTCACTTACTACTTCATTT
TAAGGATCAAGAGTAGGTGGAGCAATCGGAGAATAAGAGGCGCCCTCCCC
TACCTTAGAGTAAATAGCTATCGAAAGAGGAAGGCTCTGACTGCGGTCGT
AGACTCACTCAGACTCACTTACTACTTCATTTTATTGATCAAGAGTAGGT
GGAGCAATCGGAGGATAAGAGGCGCCCTCCCCTACCTTAGAGTAGATAGC
TATCGAAAGAGGAGTCCTCGGGTCGCCTCCGACTGCGGTCTTAGACTTAC
TTACTACTTCATTTTATTACGTACAGGCACCTGACTATGCTGCAGTTGGT
GAAAGCTTTCATTGCACCATGAGTGTTGGACCTGCTGTCGATTTCAGTGT
CGTTTTCCGATTGGATTCCGAAATACAAGAATTTGAATCAGGTAATATCA
AGCATAGGGGGGTACTAGGGTTGCAAGCTGACGGGGGTGCGCCGCCCGAC
TTTCGACCCTCGATTTTTAGGGAAGATCTAAATCTTCCTTTTGGTCTCGT
AAATCAATGAAAACTCTTTATAAGATCGAAGAAATTCCCATAGGACAGTC
TTACGAACGATTTTACGTAAGGTGTTTTACTAGACAGATTTAACGTGCAC
GTGCATTTGAAAAATGCTTAAGTGAAAACAGAAAAGGAAGCGTGCAAGAA
AAAGATGCCTTACGGTCTGCAATCCATATTGCTGAATGAGCTATTTCAGA
AAAAAACTTGTAGTTGAGGAGATCTTTTTTTGGATGAACCCCCTGGATTT
TTTATCAATTTTTCAGGACCTTGGATTTTTTTTTTCGTTTTTTGGACTAC
CCTGGATTTTCCATCTCATTTTTTTTTAACCATCATAGATTTTTATACGC
GAGAAACCAGACCCCCTGGATTTTTTTATTTCCCAGACCATCATGGACGT
CCCACCTCCTAACATAGGGTGTACAGACTAGTTCTGGAATAGTCCAATAT
TATTCTCTAATTTATCAAATATACACGCTTTTTTTATAAGAATACACTTT
ATAAGAATGTCCATGATGAAAATGGCCAAAAAATTAAGAATAATGCTAAG
AATATCACCACCATGGAAGTTTGCTACTCATGCTAAGAATGCCATTTTTA
GACCATTTTCAATTATAAATTGACAATTACCCCCAAGTAAAGCTCGCCCC
TTTCACAAAAATGCCATTTTAAGCTTGAGATGTATGTACTAAATGTTAAA
TCTAGTCTGAATTAGGATCCTAACCTAAGAATGCTGTAAGAATATTTTAG
GATGATTTTCTCAAAAAAGTTAAGAATATCCATGATGAAATGGATTTACA
CCATTCTTATAAAAAAGCGTGTACTACATATTCTTTGTAATGAATCTTTT
TAGCTGATGCTATCGAATTTGAATTAAAAGACAATCCAATGTATGGAAGT
ATTACACATCAGGAGTGTGTTCAATCTTCAGTCTATAAGAATGATACAAA
ATCAGATGATGAAACATATGTTGCTGAAACAAGTCAGGTATGTTATTAAA
ATGGGACTTGGAGACCCAGCTGGCACACAACGTTGTTTCAACGTTTAACG
TTATATGGACGTTGTGAATGTTAGATAAACGTTGAAAAAATGTTGTGTGC
CAGCTAGGGAAGTATTTCGATTTCTCAAAGTCTCTGTAAGGTAACTTTTT
CGCCGATTTATCTTTCTAAGGGTCACTCTTCGGTTAAAATTATCACTTAA
TCGTTGTTCTCCGTGATAGCTCTGTCTTGAAAAGCTTAGAATCACTATCT
CACTATTGAGTCTGTTAAATGACGCGCCTTACGTGCCCACGCGTCTTCAA
TTTATTGACGCGCCCACGCGCCTTACGCGCCTGAATTTTGACGCGCCCTC
TTACGCGCCTTATTATCAACGCGCCCTAAATTTTTGACGTGCCTTACAGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCCTAGCTTTCGGGTTAGCCTGTAGAAAAGTGCCGTAGCGCGAA
CGAAGGCTTCAAAAATTCGTCCGTCGTCCTGAGTTATCTACTGATACTTA
ACCTCAGAGCGCGTCGGTAATAAGGCAAGTAAGTAAGGCGCGTCAAAAAT
TTAGGGCACATCGATAATAAGGCGCGTAAGAAGGTGTGTCAAAACTTAAA
GCCGCGTCGAAATTCAGGCGCGTAAGGCGCGTCATTTAACAGACTCCTCA
CTATTGCTAGAAGCGAGCTGTTTTTGAGTCAATCTTATCTCTCCAGGAGC
CAAAAAAGCATTAAAAAAGCATTCTAATATTTTCTTAGGATATGTTAGAT
GTTTGTGGCCAGAATGCTGACTTTCCAATCAATAGACCATTTCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015139XLOC_015139Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026969-exon-sc0000597-1575043694:110411..110559TCONS_00026969-exon-sc0000597-1575043694:110411..110559Clytia hemisphaericaexon
TCONS_00026969-exon-sc0000597-1575043694:109375..109409TCONS_00026969-exon-sc0000597-1575043694:109375..109409Clytia hemisphaericaexon
TCONS_00026969-exon-sc0000597-1575043694:108612..109001TCONS_00026969-exon-sc0000597-1575043694:108612..109001Clytia hemisphaericaexon
TCONS_00026969-exon-sc0000597-1575043694:107032..107098TCONS_00026969-exon-sc0000597-1575043694:107032..107098Clytia hemisphaericaexon
TCONS_00026969-exon-sc0000597-1575043694:106219..106333TCONS_00026969-exon-sc0000597-1575043694:106219..106333Clytia hemisphaericaexon
TCONS_00026969-exon-sc0000597-1575043694:105123..105256TCONS_00026969-exon-sc0000597-1575043694:105123..105256Clytia hemisphaericaexon
TCONS_00026969-exon-sc0000597-1575043694:103465..103521TCONS_00026969-exon-sc0000597-1575043694:103465..103521Clytia hemisphaericaexon
TCONS_00026969-exon-sc0000597-1510915933:110411..110559TCONS_00026969-exon-sc0000597-1510915933:110411..110559Clytia hemisphaericaexon
TCONS_00026969-exon-sc0000597-1510915933:109375..109409TCONS_00026969-exon-sc0000597-1510915933:109375..109409Clytia hemisphaericaexon
TCONS_00026969-exon-sc0000597-1510915933:108612..109001TCONS_00026969-exon-sc0000597-1510915933:108612..109001Clytia hemisphaericaexon
TCONS_00026969-exon-sc0000597-1510915933:107032..107098TCONS_00026969-exon-sc0000597-1510915933:107032..107098Clytia hemisphaericaexon
TCONS_00026969-exon-sc0000597-1510915933:106219..106333TCONS_00026969-exon-sc0000597-1510915933:106219..106333Clytia hemisphaericaexon
TCONS_00026969-exon-sc0000597-1510915933:105123..105256TCONS_00026969-exon-sc0000597-1510915933:105123..105256Clytia hemisphaericaexon
TCONS_00026969-exon-sc0000597-1510915933:103465..103521TCONS_00026969-exon-sc0000597-1510915933:103465..103521Clytia hemisphaericaexon
TCONS_00026969-exon-sc0000597-1491911889:110411..110559TCONS_00026969-exon-sc0000597-1491911889:110411..110559Clytia hemisphaericaexon
TCONS_00026969-exon-sc0000597-1491911889:109375..109409TCONS_00026969-exon-sc0000597-1491911889:109375..109409Clytia hemisphaericaexon
TCONS_00026969-exon-sc0000597-1491911889:108612..109001TCONS_00026969-exon-sc0000597-1491911889:108612..109001Clytia hemisphaericaexon
TCONS_00026969-exon-sc0000597-1491911889:107032..107098TCONS_00026969-exon-sc0000597-1491911889:107032..107098Clytia hemisphaericaexon
TCONS_00026969-exon-sc0000597-1491911889:106219..106333TCONS_00026969-exon-sc0000597-1491911889:106219..106333Clytia hemisphaericaexon
TCONS_00026969-exon-sc0000597-1491911889:105123..105256TCONS_00026969-exon-sc0000597-1491911889:105123..105256Clytia hemisphaericaexon
TCONS_00026969-exon-sc0000597-1491911889:103465..103521TCONS_00026969-exon-sc0000597-1491911889:103465..103521Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000597supercontigsc0000597:103465..110559 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0101628	0	0.0783963	0	0	0	0	0.331206	0	0	0	0	0	0	0	0.0222018	0	0.445084	0	0	0.540816	0	0	0.11303	0	0	0	0.155229	0	0.256752
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026969 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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