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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026962 ID=TCONS_00026962|Name=TCONS_00026962|organism=Clytia hemisphaerica|type=transcript|length=5316bpRun BLAST on NCBI protein sequence of TCONS_00026962-protein >TCONS_00026962-protein ID=TCONS_00026962-protein|Name=TCONS_00026962-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1611bp QISKLVECLGRLSVAMGQTTVILDKPPVKVETKLFALALEKHIGTKYAGARun BLAST on NCBI transcript from alignment at sc0000597:21089..70855- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026962 ID=TCONS_00026962|Name=TCONS_00026962|organism=Clytia hemisphaerica|type=transcript|length=49767bp|location=Sequence derived from alignment at sc0000597:21089..70855- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000597:21089..70855- >TCONS_00026962 ID=TCONS_00026962|Name=TCONS_00026962|organism=Clytia hemisphaerica|type=CDS|length=91884bp|location=Sequence derived from alignment at sc0000597:21089..70855- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00026962 vs. Swiss-Prot (Human)
Match: PK1L2 (Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2 PE=1 SV=4) HSP 1 Score: 195.667 bits (496), Expect = 8.333e-50 Identity = 115/349 (32.95%), Postives = 195/349 (55.87%), Query Frame = 1
Query: 922 CMYWNKEKRLWDDSGVEIDVEMTTETRTYCKATHLTSFGGLY-IAPNPI----PTPSFQSLKEGXXXXXXXXXXXXXXXXXXXFVRKRDRNFADKEKIYYLQDNNKSDQYFYEIIVRTGIQRDAGTNSNVYLQLVGFKAQSTVHQLVDEDREVFQRASTDVFVLSSDRSLGDITCARLWHDNEEGD---WYLRDINVVDLQTNKKYKFVANRWVSIDKTNSTLYYTLTPHNEEELKSFLYIFKSKSMNDFSDRHLWFSIFNHPSKSNFTSCQRLSVAVSALFCVMTSSLMYFQNTPRTSIAVENSGVLHFTIEKLLIAFICMMVSVPINVLLVGLFRVIRPKSQKKRNS 1944
C++W++ + WDDSG ++ T+ +T+C HLT FG + + N I F + ++ ++ TV L +VY+L +++ R++D K K+ L+DN+ QY Y + V TG +R A T+S V + L G + H L D D VF+R + D F+LS+ LG++ RLWHDN GD WY+ + V DL ++K+ F+ N W+SI+ + L E++ K F ++F K+ F D H+W+SIF+ ++S+FT QR+S S L C M +S+M++ + + G + FT ++++I ++ PIN+L+V +F+ RP+ K++N+
Sbjct: 1282 CVFWDEVQETWDDSGCQVGPR-TSPYQTHCLCNHLTFFGSTFLVMSNAINIHQTAELFATFEDNPVVVTTVGCLCVVYVLVVIWARRKDAQDQAKVKVTVLEDNDPFAQYHYLVTVYTGHRRGAATSSKVTVTLYGLDGEREPHHLADPDTPVFERGAVDAFLLSTLFPLGELRSLRLWHDNS-GDRPSWYVSRVLVYDLVMDRKWYFLCNSWLSINVGDCVLDKVFPVATEQDRKQFSHLFFMKTSAGFQDGHIWYSIFSRCARSSFTRVQRVSCCFSLLLCTMLTSIMFWGVPKDPAEQKMDLGKIEFTWQEVMIGLESSILMFPINLLIVQIFQNTRPRVAKEQNT 1628 HSP 2 Score: 174.866 bits (442), Expect = 1.678e-43 Identity = 151/632 (23.89%), Postives = 265/632 (41.93%), Query Frame = 1
Query: 1966 SLPHWCIYPTWFLCIVSILGSGTLVTFYGMAFGNQRSLDWLLSTLLSFVQDIFLFQPAQXXXXXXXXXXXXXXXDD---------GVVEKFNLTQIWKRERRKSRAANSDVIDLPTSFVAGSTFDPPGEKEMESMRHESYKRQQFAATLRGIVYQICFAFVVFIIANDARRSSAYHLATGIRKMLKAHKNDIANYTAFEKVHSPRDVWPWLSNVILPEVFPEPWFSSPCKNGNSHQXXXXXXXXXXXXNEDPGIRDFPGRLYLNDLYSKVVTGMRLRHVRTENTSCVQFSLLNNNTNFKHCIGVFNLKNTEKGSYGTGWSKLTGEQKQHDHPTELPWIYKTSEELGSFPILATQHLYPGGGYAVQLFP-KSNWKSILGELKDHLWLDRYSRALILELDVYNAAEKQFISVRMVLEIEPFGGIIPFITVTPVTL----DNDSFWLICNKVAFFFLFMLFAYREYREILASGFSYLKSFWNIIE--ICLLAFICLAIYLEFTVEKYRSELTTRVNHRKPYTFIDFQVLAYTGLLFQITIGFVSFFVMIKVIRLLRFNRRISILTKTLKRALPDLAAMGLHLLIIYIASVIFSHMLLGVHLHQFSDFWKTAGTIISIMLNKFKVSEIIETKPILG 3813
LP WCI W L + + YG+ +G SL WL+S +SFV+ +F+ QP ++ A AL+ +R DD G + + +++ R SR DV + PP +E M+ K Q+ A +R I+ + F +++ ++A R SAYHL R + + + F R+ + W + ++ ++ P PG ++ D SK+V ++R VR + +SC C ++L + YG GW+ T + W Y++ ++ +PI +Y GGGY V L + IL L D+ WLD +RA+ +E VYNA F V + LE G + + L D +++ ++ +F + + + + + + Y S WN++E I L ++ LA++++ V R R NHR+ I F A I F+ +K+ LLR N +++++T L+RA D++ + +L + +A I S+++ G L + + A T++S+ L F E+++ P+LG
Sbjct: 1816 GLPWWCILVGWLLVAATSGVAAFFTMLYGLHYGRASSLRWLISMAVSFVESMFVTQPLKVLGFAAFFALVLKRVDDEEDTVAPLPGHLLGPDPYALFRARRNSSR----DV------------YQPPLTAAIEKMKTTHLKEQKAFALIREILAYLGFLWMLLLVAYGQRDPSAYHLN---RHLQHSFTRGFSGVLGF------REFFKWANTTLVSNLYGHP----------------------------------PG--FITDGNSKLVGSAQIRQVRVQESSCPLAQ--QPQAYLNGCRAPYSLDAEDMADYGEGWNATTLSE----------WQYQSQDQRQGYPIWGKLTVYRGGGYVVPLGTDRQKHVKILRYLFDNTWLDALTRAVFVESTVYNANVNLFCIVTLTLETSALGTFFTHAALQSLRLYPFTDGWHPFVVAAELIYFLFLLYYMVVQGKRMSKETWGYFCSKWNLLELAIILASWSALAVFVKRAVLAERDLQRCR-NHRE--EGISFSETAAADAALGYIIAFLVLLSTVKLWHLLRLNPKMNMITAALRRAWGDISGFMIVILTMLLAYSIASNLIFGWKLRSYKTLFDAAETMVSLQLGIFNYEEVLDYSPVLG 2371 The following BLAST results are available for this feature:
BLAST of TCONS_00026962 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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