TCONS_00026920 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026920
Unique NameTCONS_00026920
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2082

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026920 ID=TCONS_00026920|Name=TCONS_00026920|organism=Clytia hemisphaerica|type=transcript|length=2082bp
ATGGAgtgttttggtcaattttgatATGTAGATGAGAAGAGTGTGCCAGT
CTATGCCCTTGTGTGTCTGTTGTCAGTCTGTCtacatcttctttttttta
tctcgtttTTTTAATGTTCTCGTAATTATTATTTTAGATCTGACATGGAA
AAGTTCTTTCGAAAGTGTTGGCTGTAGTCTGAATTTCAGACCTCTTaaaa
accacaggtagtataaTGTCAGCAGCCTAaatgtaacctgataacagctg
ttcataattttctcacgcgcacggtaaacctctaaaggcgcttgaaaatt
atacatctgaggaaaatagtcctcccgcggaaaattttacaacaagaatc
ttgttgtgcgccagaaagtcaaaaactgatacggcaccctattcataaac
acaatcacgcaactttgttgtcatccccagtccttttagacgaacgcggt
ccttacgatatcgagattgcatattcgtcagattgtatgttttcacccat
ccctttagagcttcagctaagtgggcagaaaacaatcacaatctgatctc
aggttacccAAATGTTGACTAAAATctctttcagattttttgttttgaaa
acaaggGAATGACGTCAATAAACTTAATCATGAAGACCCTGCATTGACGT
TTTCTTTCTAACGtcaaaaatatctttgaaaattcaagaaattcaaaaca
aattccTGCCTGGCTTAACCACGTGCCTTGCAAACTACGAGCTCGAAAGA
TGCCAAACTTCCTGGGATGTTGCAAAAGCAGTGTAGCGCCAGATATTTCA
CTTAACCCTGCACCTAATCCCTTGTTTCTTGGTGAATTTGAGAATCGAGC
AAAAGATGCACATGGTGCAAAGGACAACAAATGGAATTACGTCACCATCA
CATACGACCGAACAAAAGGTGTGTACACGTGGAAAAACAAAGCTGGGAAG
TCATGGACACTTTACCCAAGTGATCAAATAGATGAATTGACTGTTGGTAC
CGATTGTGATTACTACGCATGCGCACAAGGAGGACCTGGTCATTGGATTG
CCAAATTTACATTTTCAGGTGTTTATGGTCCTGGTGATGAAATGTACCAT
CGAAAAGATGTAACACCACTTTATACCGGTGATTTTGTGTGTCAAATCTA
CGAGGTCAAGAATGATTATCATTACGTCACCATCGTGGAGGACCCTGTAC
ATACGAACTACAAATGGATGAACAGAGCAGGTTGCCAATGGTCACTAACA
CCTAAAGGTATTGACCATCAGATGGCAGTCGGGGAAGAATGTGTATATTA
CCAAGATGGACATCATAATGTTAAGTACACAGCCAAAGGTGTACACGGAC
CTGGAAATGAACTTTACTTCAGAAAATGTGGCAGTCCACTTCTGGTAGGC
GAATATCAAAACCATTTTTACGATCAGATCGGCAAAAACGATACACATTA
CGTCACTATTACATACAACATACATGATGATTCTTACACGTGGACTAATC
GTGCAGGAGAAGAATGGACTTTGTACCCCACTGAGAATTTCAACGTCTTG
AAGGTTGGCGAGGATTGCCCGGCGTTCAAAAAAGGTTATGAAGTAACAGA
GTTTTGTAGAACCGGTATCTTTGGACCGGGAATGGAATTCTTCGCAAAGT
CTGAGTGCAAACCGTGGAACATTGGCAAGTTTGTGCATGAAAAAACAACG
GTTCATATTTCATACGATACTTCTGTCCATCGATATAAAGTGAAAGTGGG
TAAAGAAGTTGGCTTTGTAGATATAACGAATGACTTTCGAATCTTAAACA
TTGATAAAGGATGCCCGTTGTTCGTGGAAGGCAAAAATAAACTTCGTATT
TCACACAAAGGTATTGACTATGATGGCAAACTGTATAAGcgaattttata
aaatatatttttaggtgATCTTTTATTgtacaaatttttatattaaaGAA
ACAAATCTTTGTATTTATCTCATTTGGAAATttcaattaaagtctgtctc
gatataatttgcagtggagacaaaaaaagGCTGTAACAGATTTTACCCTT
CAAGGCCTTCAAGAACGTTCCTTGAACTACCG
Run BLAST on NCBI

transcript from alignment at sc0000596:117234..123581-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026920 ID=TCONS_00026920|Name=TCONS_00026920|organism=Clytia hemisphaerica|type=transcript|length=6348bp|location=Sequence derived from alignment at sc0000596:117234..123581- (Clytia hemisphaerica)
ATGGAGTGTTTTGGTCAATTTTGATATGTAGATGAGAAGAGTGTGCCAGT
CTATGCCCTTGTGTGTCTGTTGTCAGTCTGTCTACATCTTCTTTTTTTTA
TCTCGTTTTTTTAATGTTCTCGTAATTATTATTTTAGATCTGACATGGAA
AAGTTCTTTCGAAAGTGTTGGCTGTAGTCTGAATTTCAGACCTCTTAAAA
ACCACAGGTAGTATAATGTCAGCAGCCTAAATGTAACCTGATAACAGCTG
TTCATAATTTTCTCACGCGCACGGTAAACCTCTAAAGGCGCTTGAAAATT
ATACATCTGAGGAAAATAGTCCTCCCGCGGAAAATTTTACAACAAGAATC
TTGTTGTGCGCCAGAAAGTCAAAAACTGATACGGCACCCTATTCATAAAC
ACAATCACGCAACTTTGTTGTCATCCCCAGTCCTTTTAGACGAACGCGGT
CCTTACGATATCGAGATTGCATATTCGTCAGATTGTATGTTTTCACCCAT
CCCTTTAGAGCTTCAGCTAAGTGGGCAGAAAACAATCACAATCTGATCTC
AGGTTACCCAAATGTTGACTAAAATCTCTTTCAGATTTTTTGTTTTGAAA
ACAAGGGAATGACGTCAATAAACTTAATCATGAAGACCCTGCATTGACGT
TTTCTTTCTAACGTCAAAAATATCTTTGAAAATTCAAGAAATTCAAAACA
AATTCCTGCCTGGCTTAACCACGTGCCTTGCAAACTACGAGCTCGAAAGA
TGCCAAACTTCCTGGGATGTTGCAAAAGCAGTGTAGCGCCAGATATTTCA
CTTAACCGTAAGTTATATAACTTTTCTAACGGAAAAAGGCCAAAGCTTCG
GGTAGTAGAAAAATGAGCCTCGGAAAGTTGGACTGTTTGCTTCACTCGAC
ACAGACAAAGCGGAAATTTTTCGGAAAAGTCAGTGGAATTTTACCCCGAA
CGACGGTATTGAGTTGACATTTTGTTCTCTTTGATCCTGATACAAACATT
TCCTTTATACTGTCGTTTTGCATAAGGTTTCTTTTCCCGCACCAAGACTC
CTCTGCCACCTTAAAAGTAACCGTAAAAGAACTAGAACTTAGAGTACTGT
AGTTGAGAAATGAGCTTTGGAAAGTTAGGCAGTATCGTAAGTTTTCCGTA
CCTTAGAAGAAAACCCTTTCCAATCCCATGCCGGTTACATATATCCCGGA
AAAAGTAGCGGATAAATCCCAGGAAAGTGTCGAGAATCTTAGTGTGTAAA
TGGGAATTTTATTTTCATTTACTTTTTCAGCTGCACCTAATCCCTTGTTT
CTTGGTGAATTTGAGAATCGAGCAAAAGATGCACATGGTGCAAAGGACAA
CAAATGGAATTACGTCACCATCACATACGACCGAACAAAAGGTATCCATT
TCACTCTATTATCCTTACTGGTGCTGGTGGCATTTTAATTTCTAATGTTC
AAAGTTACCGTAACTTGGTCTAATGTTGACATCCCTCTTCTAATCCCGAC
ACCCCTTTTGAGAGATAGGAATAGTAGAAAGGTCGGAATCGCTTATGGAA
ACTACTGTATATTTCTTTGCTTAGCGACTAAAGAGGAAAAAATATTTTGT
CTAACAGTGATTTTGACCATACTATTATTCCTATCTCTAAAACTACATCG
CTATTAATAATAGCATCCTATGTTTTAGGTGACATAGATGAAAGTTTAAA
AATATATAGAAAGTTCTAAAAAAATGCCAACGGGTGAGCGCTTTTTTAGA
CGTAAGATTTTTCATTCTTCTTTTTATACTAATAGGTGTGTACACGTGGA
AAAACAAAGCTGGGAAGTCATGGACACTTTACCCAAGTGATCAAATAGAT
GAATTGACTGTTGGTACCGATTGTGATTACTACGCATGCGCACAAGGAGG
ACCTGGTCATTGGATTGCCAAATTTACATTTTCAGGTGTTTATGGTCCTG
GTGATGAAATGTACCATCGAAAAGGTAATTTTATTCATCTACTTGTTCAG
TCAAACATTCATCTGTAACGTGTACAACGGTTTGGTTTTTTGTGATGAGG
TCTCGTTGAAATCTAGTAAAACATAAGTTATTGTCGTGCGATGGGTCACA
TTTTTGGGGCTTATAAGTGAAATCTTTAGTTTAATTTTGTTATTTTTCAT
TATATTATATCAAGAGAAATTTAAGGTAATTGACGTCCTAACGTCCTATA
TGCATGAGCTGTGATTGTCAAATCCTATTTAAATTCTCAAGAATTTACAG
TAGCGTCATGTTCCAAGTTGGAATAAAAATCAGTATCCTTTTTTCTAAAA
TGGGAAGAAATATTATCAGGGGTGTCCTAGTGGAAGAAACTGTGATATGA
TGGGGTATAATTAATGTGGTTCAAGGATCCCTGTATCATAAGCAACGTAA
CGTTTAAATCTTTATNGTATAATTAATGTGGTTCAAGGATCCCTGTATTA
TAAGCAACGTAACGTTTACATCTTTAACTTTGCAATAGATGTAACACCAC
TTTATACCGGTGATTTTGTGTGTCAAATCTACGAGGTCAAGAATGATTAT
CATTACGTCACCATCGTGGAGGACCCTGTACATACGAACTACAAATGGAT
GAACAGAGCAGGTTGCCAATGGTCACTAACACCTAAAGGTATTGACCATC
AGATGGCAGTCGGGGAAGAATGTGTATATTACCAAGATGGACATCATAAT
GTTAAGTACACAGCCAAAGGTGTACACGGACCTGGAAATGAACTTTACTT
CAGAAAATGTGAGTAGATATCTCTCTTGCAATGTTGAGCTACACGTTTTT
TTATAAGAACATCAAAAATTTTTGAAGCCTAAAAATGTTCTTAAAAAACT
GTTCTTATTTATTTTCATCATTTTTTGAGAATTTTTTTCCATTTTCCTAA
GAACACAGGTGTTTTAGAGCCCACAAAGCCTTAAAATGTTCTTAACTTGT
TCTTAAGATTTTGACCACCAAAGACTTATGTTCTTATATAGTTTGTTCTT
ATAAAAAAACGTGTATACAATTTTAATATTGTTACATGGATCACACCAAT
TTTGAAAATGTGAAAAATCGCTGTGTTCAAAGCAATTCTATATATTCCTT
TTGAAAATTCCACTCAGTGTGTTAACCTTGTTTGTCTTCATTCATTAAGG
TGCCGGTGCCATTCTTTGGTACTTCTAGGTACTAACATGATTACCACACC
CCCTTCTCACAGATCCACTGGAAAAGTCGTTCCCGGTCGAAAATTATCCT
CCAACTTTTGTCTCCACTATGAAAATAATCAAATAAATCAATCCTCACTG
CAAAACATTACGCTATATTTCTCATCCCCATTGAAAATTGAAAAGATTGA
AATCCCCTGGCATATAAAATATTGAAATACCAATCCCCATCGAGTTTCAG
TCCGTTATTTTTATCCCCACCGGCTGAAAAAATCCTACCGGGTCTGCGAG
AAGGGAGTGTGTTACCCTATACACGCTTTTTTTTTTATAAGAATGGTGTA
AATCCATTTCATCATGGATATTCTTAACTTTTTGGGGAAAATCATCCTAA
AATATTCTTACAGCATTCTTAGTACTTGGGGGTAATTGGCAATTTATAAT
TTAAAATGCTCTAAAATTGACATTCTTTGCTTGAAAAGCAAAATTCCATG
ATGGTGATATTCTTAGCATATTCTAAATTTTTTGGCCATTTTCATCATGG
ACATTCTTATAAAGTGTATTCTTATAAAAAAAAAAGCGTGTATCTTACAC
CGAATCTTAGTTCGACTTATTTTTACATGGGTTTGGGCGAAGAAACCTTA
TTAAGCTTATGAATCTAAATGTCCCATAAATTTTTCTCATAGGTGGCAGT
CCACTTCTGGTAGGCGAATATCAAAACCATTTTTACGATCAGATCGGCAA
AAACGATACACATTACGTCACTATTACATACAACATACATGATGATTCTT
ACACGTGGTCTAATCGTGCAGGAGAAGAATGGACTTTGTACCCCACTGAG
AATTTCAACGTCTTGAAGGTTGGCGAGGATTGCCCGGCGTTCAAAAAAGG
TTATGAAGTAACAGAGTTTTGTAGAACCGGTATCTTTGGACCGGGAATGG
AATTCTTCGCAAAGTCTGGTGAGTTTGCAAGACCCCTATTTTATTTTCAG
TCAAAACAACACCTATCTTTCTTTATCTGAATGTTATTAAAAAGTTTTAT
GACTCGATCTTAACAACACCCCTGTCTCACAGCCCCGGTGGAACTTTTTT
CTTCAGTGGGGATAAAAATCCCAATCGAAATCTAAATGGGGATAGAAATT
TTATTGTTCCAAGGTTCAAAAATCCAGTGGGGATGGTTTTGGAGTGCAAT
TTTTAGACATTGATTGTCGAGTGAGTGAATCAAAGTCATTTTTCCAGTGG
GGCTGAAATTCCAGGGTATTTTCCAACCGGGGACTAAATTTTTGCCAAAT
TTTCCAGTGGGGATGGGGTCTCAGTGGGTCTGTGATACAGGGGTGTTTAA
TATCCTATTTTTTGAAGATTTGACGATGATTTATTTTGAAAATGCACGAG
TTGTTGTTTTCAACACGTTAAACTCATGGTTGAGACAGGGGTATCTAAAC
ACAAACAAAGTTCAAGTGAGTACACCTGTNCACTTCTGGTAGGCGAATAT
CAAAACCATTTTTACGATCAGATCGGCAAAAACGATACACATTACGTCAC
TATTACATACAACATACATGATGATTCTTACACGTGGACTAATCGTGCAG
GAGAAGAATGGACTTTGTACCCCACTGAGAATTTCAACGTCTTGAAGGTT
GGCGAGGATTGCCCGGCGTTCAAAAAAGGTTATGAAGTAACAGAGTTTTG
TAGAACCGGTATCTTTGGACCGGGAATGGAATTCTTCGCAAAGTCTGGTG
AGTTTGCAAGACCCCTATTTTATTTTCAGTCAAAACAACACCTATCTTTC
TTTATCTGAATGTTATTAAAAAGTTTTATGACTCGATCTTAACAACACCC
CTGTCTCACAGCCCCGGTGGAACTTTTTTCTTCAGTGGGGATAAAAATCC
CAATCGAAATCTAAATGGGGATAGAAATTTTATTGTTCCAAGGTTCAAAA
ATCCAGTGGGGATGGTTTTGGAGTGCAATTTTTAGACATTGATTGTCGAG
TGAGTGAATCAAAGTCATTTTTCCAGTGGGGCTGAAATTCCAGGGTATTT
TCCAACCGGGGACTAAATTTTTGCCAAATTTTCCAGTGGGGATGGGGTCT
CAGTGGGTCTGTGATACAGGGGTGTTTAATATCCTATTTTTTGAAGATTT
GACGATGATTTATTTTGAAAATGCACGAGTTGTTGTTTTCAACACGTTAA
ACTCATGGTTGAGACAGGGGTATCTAAACACAAACAAAGTTCAAGTGAGT
ACACCTGTCAACCCTTAGCCGCGCAGTCAGGGACTGGTAACGAATAATAC
AAGGTAAATTCTTTTAGACGACAGTATCGAAGACACATGCGTAGGAGCAG
TTTTGTGAAAATTGTAAGGGTATCTTTACATTGAAGCGATAAAGTAACGT
CAATATAGTTGAGGTATTCGAATATGCTAAAATCAGTTTGCACTTCACCA
CAGAGGCCCGGGACAATGTCTTTCATATGACATGAATTTTGGCAGAGATT
TTCCTGGTTTGTTTTCAGAGTCAGCCTAAAAATGCCGTACGCCGAGCCGC
GCCGCTAAGGTTTGATAGGCGTATTTGTAATGTCTTTAGTTTTCTATTGG
TCATAACCTCGGGCATAGTTGGCCATCCATAGAATTAAAAATTTCTAAAA
CTAAAGAAAGTGAGTTTGAGAAAATAATCTATTTTCTTAGCAGAAGCTTC
TGGTTTTTTTAAGACATCAACTGGTTCAAAATTAAGGTCAAATATCTTCT
TTTTTCTTCATTTTGGTAGAGTGCAAACCGTGGAACATTGGCAAGTTTGT
GCATGAAAAAACAACGGTTCATATTTCATACGATACTTCTGTCCATCGAT
ATAAAGTGAAAGTGGGTAAAGAAGTTGGCTTTGTAGATATAACGAATGAC
TTTCGAATCTTAAACATTGATAAAGGATGCCCGTTGTTCGTGGAAGGCAA
AAATAAACTTCGTATTTCACACAAAGGTATTGACTATGATGGCAAACTGT
ATAAGCGAATTTTATAAAATATATTTTTAGGTGATCTTTTATTGTACAAA
TTTTTATATTAAAGAAACAAATCTTTGTATTTATCTCATTTGGAAATTTC
AATTAAAGTCTGTCTCGATATAATTTGCAGTGGAGACAAAAAAAGGCTGT
AACAGATTTTACCCTTCAAGGCCTTCAAGAACGTTCCTTGAACTACCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015118XLOC_015118Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026920-exon-sc0000596-1575043694:122775..123581TCONS_00026920-exon-sc0000596-1575043694:122775..123581Clytia hemisphaericaexon
TCONS_00026920-exon-sc0000596-1575043694:122191..122301TCONS_00026920-exon-sc0000596-1575043694:122191..122301Clytia hemisphaericaexon
TCONS_00026920-exon-sc0000596-1575043694:121608..121796TCONS_00026920-exon-sc0000596-1575043694:121608..121796Clytia hemisphaericaexon
TCONS_00026920-exon-sc0000596-1575043694:120824..121093TCONS_00026920-exon-sc0000596-1575043694:120824..121093Clytia hemisphaericaexon
TCONS_00026920-exon-sc0000596-1575043694:119719..119739TCONS_00026920-exon-sc0000596-1575043694:119719..119739Clytia hemisphaericaexon
TCONS_00026920-exon-sc0000596-1575043694:118685..118939TCONS_00026920-exon-sc0000596-1575043694:118685..118939Clytia hemisphaericaexon
TCONS_00026920-exon-sc0000596-1575043694:117234..117662TCONS_00026920-exon-sc0000596-1575043694:117234..117662Clytia hemisphaericaexon
TCONS_00026920-exon-sc0000596-1510915933:122775..123581TCONS_00026920-exon-sc0000596-1510915933:122775..123581Clytia hemisphaericaexon
TCONS_00026920-exon-sc0000596-1510915933:122191..122301TCONS_00026920-exon-sc0000596-1510915933:122191..122301Clytia hemisphaericaexon
TCONS_00026920-exon-sc0000596-1510915933:121608..121796TCONS_00026920-exon-sc0000596-1510915933:121608..121796Clytia hemisphaericaexon
TCONS_00026920-exon-sc0000596-1510915933:120824..121093TCONS_00026920-exon-sc0000596-1510915933:120824..121093Clytia hemisphaericaexon
TCONS_00026920-exon-sc0000596-1510915933:119719..119739TCONS_00026920-exon-sc0000596-1510915933:119719..119739Clytia hemisphaericaexon
TCONS_00026920-exon-sc0000596-1510915933:118685..118939TCONS_00026920-exon-sc0000596-1510915933:118685..118939Clytia hemisphaericaexon
TCONS_00026920-exon-sc0000596-1510915933:117234..117662TCONS_00026920-exon-sc0000596-1510915933:117234..117662Clytia hemisphaericaexon
TCONS_00026920-exon-sc0000596-1491911889:122775..123581TCONS_00026920-exon-sc0000596-1491911889:122775..123581Clytia hemisphaericaexon
TCONS_00026920-exon-sc0000596-1491911889:122191..122301TCONS_00026920-exon-sc0000596-1491911889:122191..122301Clytia hemisphaericaexon
TCONS_00026920-exon-sc0000596-1491911889:121608..121796TCONS_00026920-exon-sc0000596-1491911889:121608..121796Clytia hemisphaericaexon
TCONS_00026920-exon-sc0000596-1491911889:120824..121093TCONS_00026920-exon-sc0000596-1491911889:120824..121093Clytia hemisphaericaexon
TCONS_00026920-exon-sc0000596-1491911889:119719..119739TCONS_00026920-exon-sc0000596-1491911889:119719..119739Clytia hemisphaericaexon
TCONS_00026920-exon-sc0000596-1491911889:118685..118939TCONS_00026920-exon-sc0000596-1491911889:118685..118939Clytia hemisphaericaexon
TCONS_00026920-exon-sc0000596-1491911889:117234..117662TCONS_00026920-exon-sc0000596-1491911889:117234..117662Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000596supercontigsc0000596:117234..123581 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.83636	1.8637	2.27316	2.11391	4.87211	3.84953	3.08959	4.2098	3.23884	3.2158	2.74945	2.47752	0.528954	0.468157	0.358965	0.625634	0.323538	1.07604	0.48125	1.19706	1.21675	0.830661	1.30946	2.27741	4.96701	4.29611	1.00331	0.577649	0.680092	1.3168
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026920 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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