TCONS_00026919 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026919
Unique NameTCONS_00026919
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1487

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026919 ID=TCONS_00026919|Name=TCONS_00026919|organism=Clytia hemisphaerica|type=transcript|length=1487bp
tgaaaacaaggGAATGACGTCAATAAACTTAATCATGAAGACCCTGCATT
GACGTTTTCTTTCTAACGtcaaaaatatctttgaaaattcaagaaattca
aaacaaattccTGCCTGGCTTAACCACGTGCCTTGCAAACTACGAGCTCG
AAAGATGCCAAACTTCCTGGGATGTTGCAAAAGCAGTGTAGCGCCAGATA
TTTCACTTAACCCTGCACCTAATCCCTTGTTTCTTGGTGAATTTGAGAAT
CGAGCAAAAGATGCACATGGTGCAAAGGACAACAAATGGAATTACGTCAC
CATCACATACGACCGAACAAAAGGTGTGTACACGTGGAAAAACAAAGCTG
GGAAGTCATGGACACTTTACCCAAGTGATCAAATAGATGAATTGACTGTT
GGTACCGATTGTGATTACTACGCATGCGCACAAGGAGGACCTGGTCATTG
GATTGCCAAATTTACATTTTCAGGTGTTTATGGTCCTGGTGATGAAATGT
ACCATCGAAAAGATGTAACACCACTTTATACCGGTGATTTTGTGTGTCAA
ATCTACGAGGTCAAGAATGATTATCATTACGTCACCATCGTGGAGGACCC
TGTACATACGAACTACAAATGGATGAACAGAGCAGGTTGCCAATGGTCAC
TAACACCTAAAGGTATTGACCATCAGATGGCAGTCGGGGAAGAATGTGTA
TATTACCAAGATGGACATCATAATGTTAAGTACACAGCCAAAGGTGTACA
CGGACCTGGAAATGAACTTTACTTCAGAAAATGTGGCAGTCCACTTCTGG
TAGGCGAATATCAAAACCATTTTTACGATCAGATCGGCAAAAACGATACA
CATTACGTCACTATTACATACAACATACATGATGATTCTTACACGTGGAC
TAATCGTGCAGGAGAAGAATGGACTTTGTACCCCACTGAGAATTTCAACG
TCTTGAAGGTTGGCGAGGATTGCCCGGCGTTCAAAAAAGGTTATGAAGTA
ACAGAGTTTTGTAGAACCGGTATCTTTGGACCGGGAATGGAATTCTTCGC
AAAGTCTGAGTGCAAACCGTGGAACATTGGCAAGTTTGTGCATGAAAAAA
CAACGGTTCATATTTCATACGATACTTCTGTCCATCGATATAAAGTGAAA
GTGGGTAAAGAAGTTGGCTTTGTAGATATAACGAATGACTTTCGAATCTT
AAACATTGATAAAGGATGCCCGTTGTTCGTGGAAGGCAAAAATAAACTTC
GTATTTCACACAAAGGTATTGACTATGATGGCAAACTGTATAAGcgaatt
ttataaaatatatttttaggtgATCTTTTATTgtacaaatttttatatta
aaGAAACAAATCTTTGTATTTATCTCATTTGGAAATttcaattaaagtct
gtctcgatataatttgcagtggagacaaaaaaagGCTGTAACAGATTTTA
CCCTTCAAGGCCTTCAAGAACGTTCCTTGAACTACCG
Run BLAST on NCBI

transcript from alignment at sc0000596:117234..122986-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026919 ID=TCONS_00026919|Name=TCONS_00026919|organism=Clytia hemisphaerica|type=transcript|length=5753bp|location=Sequence derived from alignment at sc0000596:117234..122986- (Clytia hemisphaerica)
TGAAAACAAGGGAATGACGTCAATAAACTTAATCATGAAGACCCTGCATT
GACGTTTTCTTTCTAACGTCAAAAATATCTTTGAAAATTCAAGAAATTCA
AAACAAATTCCTGCCTGGCTTAACCACGTGCCTTGCAAACTACGAGCTCG
AAAGATGCCAAACTTCCTGGGATGTTGCAAAAGCAGTGTAGCGCCAGATA
TTTCACTTAACCGTAAGTTATATAACTTTTCTAACGGAAAAAGGCCAAAG
CTTCGGGTAGTAGAAAAATGAGCCTCGGAAAGTTGGACTGTTTGCTTCAC
TCGACACAGACAAAGCGGAAATTTTTCGGAAAAGTCAGTGGAATTTTACC
CCGAACGACGGTATTGAGTTGACATTTTGTTCTCTTTGATCCTGATACAA
ACATTTCCTTTATACTGTCGTTTTGCATAAGGTTTCTTTTCCCGCACCAA
GACTCCTCTGCCACCTTAAAAGTAACCGTAAAAGAACTAGAACTTAGAGT
ACTGTAGTTGAGAAATGAGCTTTGGAAAGTTAGGCAGTATCGTAAGTTTT
CCGTACCTTAGAAGAAAACCCTTTCCAATCCCATGCCGGTTACATATATC
CCGGAAAAAGTAGCGGATAAATCCCAGGAAAGTGTCGAGAATCTTAGTGT
GTAAATGGGAATTTTATTTTCATTTACTTTTTCAGCTGCACCTAATCCCT
TGTTTCTTGGTGAATTTGAGAATCGAGCAAAAGATGCACATGGTGCAAAG
GACAACAAATGGAATTACGTCACCATCACATACGACCGAACAAAAGGTAT
CCATTTCACTCTATTATCCTTACTGGTGCTGGTGGCATTTTAATTTCTAA
TGTTCAAAGTTACCGTAACTTGGTCTAATGTTGACATCCCTCTTCTAATC
CCGACACCCCTTTTGAGAGATAGGAATAGTAGAAAGGTCGGAATCGCTTA
TGGAAACTACTGTATATTTCTTTGCTTAGCGACTAAAGAGGAAAAAATAT
TTTGTCTAACAGTGATTTTGACCATACTATTATTCCTATCTCTAAAACTA
CATCGCTATTAATAATAGCATCCTATGTTTTAGGTGACATAGATGAAAGT
TTAAAAATATATAGAAAGTTCTAAAAAAATGCCAACGGGTGAGCGCTTTT
TTAGACGTAAGATTTTTCATTCTTCTTTTTATACTAATAGGTGTGTACAC
GTGGAAAAACAAAGCTGGGAAGTCATGGACACTTTACCCAAGTGATCAAA
TAGATGAATTGACTGTTGGTACCGATTGTGATTACTACGCATGCGCACAA
GGAGGACCTGGTCATTGGATTGCCAAATTTACATTTTCAGGTGTTTATGG
TCCTGGTGATGAAATGTACCATCGAAAAGGTAATTTTATTCATCTACTTG
TTCAGTCAAACATTCATCTGTAACGTGTACAACGGTTTGGTTTTTTGTGA
TGAGGTCTCGTTGAAATCTAGTAAAACATAAGTTATTGTCGTGCGATGGG
TCACATTTTTGGGGCTTATAAGTGAAATCTTTAGTTTAATTTTGTTATTT
TTCATTATATTATATCAAGAGAAATTTAAGGTAATTGACGTCCTAACGTC
CTATATGCATGAGCTGTGATTGTCAAATCCTATTTAAATTCTCAAGAATT
TACAGTAGCGTCATGTTCCAAGTTGGAATAAAAATCAGTATCCTTTTTTC
TAAAATGGGAAGAAATATTATCAGGGGTGTCCTAGTGGAAGAAACTGTGA
TATGATGGGGTATAATTAATGTGGTTCAAGGATCCCTGTATCATAAGCAA
CGTAACGTTTAAATCTTTATNGTATAATTAATGTGGTTCAAGGATCCCTG
TATTATAAGCAACGTAACGTTTACATCTTTAACTTTGCAATAGATGTAAC
ACCACTTTATACCGGTGATTTTGTGTGTCAAATCTACGAGGTCAAGAATG
ATTATCATTACGTCACCATCGTGGAGGACCCTGTACATACGAACTACAAA
TGGATGAACAGAGCAGGTTGCCAATGGTCACTAACACCTAAAGGTATTGA
CCATCAGATGGCAGTCGGGGAAGAATGTGTATATTACCAAGATGGACATC
ATAATGTTAAGTACACAGCCAAAGGTGTACACGGACCTGGAAATGAACTT
TACTTCAGAAAATGTGAGTAGATATCTCTCTTGCAATGTTGAGCTACACG
TTTTTTTATAAGAACATCAAAAATTTTTGAAGCCTAAAAATGTTCTTAAA
AAACTGTTCTTATTTATTTTCATCATTTTTTGAGAATTTTTTTCCATTTT
CCTAAGAACACAGGTGTTTTAGAGCCCACAAAGCCTTAAAATGTTCTTAA
CTTGTTCTTAAGATTTTGACCACCAAAGACTTATGTTCTTATATAGTTTG
TTCTTATAAAAAAACGTGTATACAATTTTAATATTGTTACATGGATCACA
CCAATTTTGAAAATGTGAAAAATCGCTGTGTTCAAAGCAATTCTATATAT
TCCTTTTGAAAATTCCACTCAGTGTGTTAACCTTGTTTGTCTTCATTCAT
TAAGGTGCCGGTGCCATTCTTTGGTACTTCTAGGTACTAACATGATTACC
ACACCCCCTTCTCACAGATCCACTGGAAAAGTCGTTCCCGGTCGAAAATT
ATCCTCCAACTTTTGTCTCCACTATGAAAATAATCAAATAAATCAATCCT
CACTGCAAAACATTACGCTATATTTCTCATCCCCATTGAAAATTGAAAAG
ATTGAAATCCCCTGGCATATAAAATATTGAAATACCAATCCCCATCGAGT
TTCAGTCCGTTATTTTTATCCCCACCGGCTGAAAAAATCCTACCGGGTCT
GCGAGAAGGGAGTGTGTTACCCTATACACGCTTTTTTTTTTATAAGAATG
GTGTAAATCCATTTCATCATGGATATTCTTAACTTTTTGGGGAAAATCAT
CCTAAAATATTCTTACAGCATTCTTAGTACTTGGGGGTAATTGGCAATTT
ATAATTTAAAATGCTCTAAAATTGACATTCTTTGCTTGAAAAGCAAAATT
CCATGATGGTGATATTCTTAGCATATTCTAAATTTTTTGGCCATTTTCAT
CATGGACATTCTTATAAAGTGTATTCTTATAAAAAAAAAAGCGTGTATCT
TACACCGAATCTTAGTTCGACTTATTTTTACATGGGTTTGGGCGAAGAAA
CCTTATTAAGCTTATGAATCTAAATGTCCCATAAATTTTTCTCATAGGTG
GCAGTCCACTTCTGGTAGGCGAATATCAAAACCATTTTTACGATCAGATC
GGCAAAAACGATACACATTACGTCACTATTACATACAACATACATGATGA
TTCTTACACGTGGTCTAATCGTGCAGGAGAAGAATGGACTTTGTACCCCA
CTGAGAATTTCAACGTCTTGAAGGTTGGCGAGGATTGCCCGGCGTTCAAA
AAAGGTTATGAAGTAACAGAGTTTTGTAGAACCGGTATCTTTGGACCGGG
AATGGAATTCTTCGCAAAGTCTGGTGAGTTTGCAAGACCCCTATTTTATT
TTCAGTCAAAACAACACCTATCTTTCTTTATCTGAATGTTATTAAAAAGT
TTTATGACTCGATCTTAACAACACCCCTGTCTCACAGCCCCGGTGGAACT
TTTTTCTTCAGTGGGGATAAAAATCCCAATCGAAATCTAAATGGGGATAG
AAATTTTATTGTTCCAAGGTTCAAAAATCCAGTGGGGATGGTTTTGGAGT
GCAATTTTTAGACATTGATTGTCGAGTGAGTGAATCAAAGTCATTTTTCC
AGTGGGGCTGAAATTCCAGGGTATTTTCCAACCGGGGACTAAATTTTTGC
CAAATTTTCCAGTGGGGATGGGGTCTCAGTGGGTCTGTGATACAGGGGTG
TTTAATATCCTATTTTTTGAAGATTTGACGATGATTTATTTTGAAAATGC
ACGAGTTGTTGTTTTCAACACGTTAAACTCATGGTTGAGACAGGGGTATC
TAAACACAAACAAAGTTCAAGTGAGTACACCTGTNCACTTCTGGTAGGCG
AATATCAAAACCATTTTTACGATCAGATCGGCAAAAACGATACACATTAC
GTCACTATTACATACAACATACATGATGATTCTTACACGTGGACTAATCG
TGCAGGAGAAGAATGGACTTTGTACCCCACTGAGAATTTCAACGTCTTGA
AGGTTGGCGAGGATTGCCCGGCGTTCAAAAAAGGTTATGAAGTAACAGAG
TTTTGTAGAACCGGTATCTTTGGACCGGGAATGGAATTCTTCGCAAAGTC
TGGTGAGTTTGCAAGACCCCTATTTTATTTTCAGTCAAAACAACACCTAT
CTTTCTTTATCTGAATGTTATTAAAAAGTTTTATGACTCGATCTTAACAA
CACCCCTGTCTCACAGCCCCGGTGGAACTTTTTTCTTCAGTGGGGATAAA
AATCCCAATCGAAATCTAAATGGGGATAGAAATTTTATTGTTCCAAGGTT
CAAAAATCCAGTGGGGATGGTTTTGGAGTGCAATTTTTAGACATTGATTG
TCGAGTGAGTGAATCAAAGTCATTTTTCCAGTGGGGCTGAAATTCCAGGG
TATTTTCCAACCGGGGACTAAATTTTTGCCAAATTTTCCAGTGGGGATGG
GGTCTCAGTGGGTCTGTGATACAGGGGTGTTTAATATCCTATTTTTTGAA
GATTTGACGATGATTTATTTTGAAAATGCACGAGTTGTTGTTTTCAACAC
GTTAAACTCATGGTTGAGACAGGGGTATCTAAACACAAACAAAGTTCAAG
TGAGTACACCTGTCAACCCTTAGCCGCGCAGTCAGGGACTGGTAACGAAT
AATACAAGGTAAATTCTTTTAGACGACAGTATCGAAGACACATGCGTAGG
AGCAGTTTTGTGAAAATTGTAAGGGTATCTTTACATTGAAGCGATAAAGT
AACGTCAATATAGTTGAGGTATTCGAATATGCTAAAATCAGTTTGCACTT
CACCACAGAGGCCCGGGACAATGTCTTTCATATGACATGAATTTTGGCAG
AGATTTTCCTGGTTTGTTTTCAGAGTCAGCCTAAAAATGCCGTACGCCGA
GCCGCGCCGCTAAGGTTTGATAGGCGTATTTGTAATGTCTTTAGTTTTCT
ATTGGTCATAACCTCGGGCATAGTTGGCCATCCATAGAATTAAAAATTTC
TAAAACTAAAGAAAGTGAGTTTGAGAAAATAATCTATTTTCTTAGCAGAA
GCTTCTGGTTTTTTTAAGACATCAACTGGTTCAAAATTAAGGTCAAATAT
CTTCTTTTTTCTTCATTTTGGTAGAGTGCAAACCGTGGAACATTGGCAAG
TTTGTGCATGAAAAAACAACGGTTCATATTTCATACGATACTTCTGTCCA
TCGATATAAAGTGAAAGTGGGTAAAGAAGTTGGCTTTGTAGATATAACGA
ATGACTTTCGAATCTTAAACATTGATAAAGGATGCCCGTTGTTCGTGGAA
GGCAAAAATAAACTTCGTATTTCACACAAAGGTATTGACTATGATGGCAA
ACTGTATAAGCGAATTTTATAAAATATATTTTTAGGTGATCTTTTATTGT
ACAAATTTTTATATTAAAGAAACAAATCTTTGTATTTATCTCATTTGGAA
ATTTCAATTAAAGTCTGTCTCGATATAATTTGCAGTGGAGACAAAAAAAG
GCTGTAACAGATTTTACCCTTCAAGGCCTTCAAGAACGTTCCTTGAACTA
CCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015118XLOC_015118Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026919-exon-sc0000596-1575043694:122775..122986TCONS_00026919-exon-sc0000596-1575043694:122775..122986Clytia hemisphaericaexon
TCONS_00026919-exon-sc0000596-1575043694:122191..122301TCONS_00026919-exon-sc0000596-1575043694:122191..122301Clytia hemisphaericaexon
TCONS_00026919-exon-sc0000596-1575043694:121608..121796TCONS_00026919-exon-sc0000596-1575043694:121608..121796Clytia hemisphaericaexon
TCONS_00026919-exon-sc0000596-1575043694:120824..121093TCONS_00026919-exon-sc0000596-1575043694:120824..121093Clytia hemisphaericaexon
TCONS_00026919-exon-sc0000596-1575043694:119671..119739TCONS_00026919-exon-sc0000596-1575043694:119671..119739Clytia hemisphaericaexon
TCONS_00026919-exon-sc0000596-1575043694:118685..118891TCONS_00026919-exon-sc0000596-1575043694:118685..118891Clytia hemisphaericaexon
TCONS_00026919-exon-sc0000596-1575043694:117234..117662TCONS_00026919-exon-sc0000596-1575043694:117234..117662Clytia hemisphaericaexon
TCONS_00026919-exon-sc0000596-1510915933:122775..122986TCONS_00026919-exon-sc0000596-1510915933:122775..122986Clytia hemisphaericaexon
TCONS_00026919-exon-sc0000596-1510915933:122191..122301TCONS_00026919-exon-sc0000596-1510915933:122191..122301Clytia hemisphaericaexon
TCONS_00026919-exon-sc0000596-1510915933:121608..121796TCONS_00026919-exon-sc0000596-1510915933:121608..121796Clytia hemisphaericaexon
TCONS_00026919-exon-sc0000596-1510915933:120824..121093TCONS_00026919-exon-sc0000596-1510915933:120824..121093Clytia hemisphaericaexon
TCONS_00026919-exon-sc0000596-1510915933:119671..119739TCONS_00026919-exon-sc0000596-1510915933:119671..119739Clytia hemisphaericaexon
TCONS_00026919-exon-sc0000596-1510915933:118685..118891TCONS_00026919-exon-sc0000596-1510915933:118685..118891Clytia hemisphaericaexon
TCONS_00026919-exon-sc0000596-1510915933:117234..117662TCONS_00026919-exon-sc0000596-1510915933:117234..117662Clytia hemisphaericaexon
TCONS_00026919-exon-sc0000596-1491911889:122775..122986TCONS_00026919-exon-sc0000596-1491911889:122775..122986Clytia hemisphaericaexon
TCONS_00026919-exon-sc0000596-1491911889:122191..122301TCONS_00026919-exon-sc0000596-1491911889:122191..122301Clytia hemisphaericaexon
TCONS_00026919-exon-sc0000596-1491911889:121608..121796TCONS_00026919-exon-sc0000596-1491911889:121608..121796Clytia hemisphaericaexon
TCONS_00026919-exon-sc0000596-1491911889:120824..121093TCONS_00026919-exon-sc0000596-1491911889:120824..121093Clytia hemisphaericaexon
TCONS_00026919-exon-sc0000596-1491911889:119671..119739TCONS_00026919-exon-sc0000596-1491911889:119671..119739Clytia hemisphaericaexon
TCONS_00026919-exon-sc0000596-1491911889:118685..118891TCONS_00026919-exon-sc0000596-1491911889:118685..118891Clytia hemisphaericaexon
TCONS_00026919-exon-sc0000596-1491911889:117234..117662TCONS_00026919-exon-sc0000596-1491911889:117234..117662Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000596supercontigsc0000596:117234..122986 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.000708004	0.058315	0	0	1.75413	2.2741	3.44174	1.63745	0.223345	2.69534	0	0	0	0	0	0	0	0	0	0	0	0	0.632142	0.0665338	177.082	75.425	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026919 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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