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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026901 ID=TCONS_00026901|Name=TCONS_00026901|organism=Clytia hemisphaerica|type=transcript|length=2081bpRun BLAST on NCBI protein sequence of TCONS_00026901-protein >TCONS_00026901-protein ID=TCONS_00026901-protein|Name=TCONS_00026901-protein|organism=Clytia hemisphaerica|type=polypeptide|length=646bp MSGRDFKNFLSAHQKQIGQQDPKLVQRFLAGHKPNYKPVNYEKVQLLTQIRun BLAST on NCBI transcript from alignment at sc0000596:107101..112151+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026901 ID=TCONS_00026901|Name=TCONS_00026901|organism=Clytia hemisphaerica|type=transcript|length=5051bp|location=Sequence derived from alignment at sc0000596:107101..112151+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000596:107101..112151+ >TCONS_00026901 ID=TCONS_00026901|Name=TCONS_00026901|organism=Clytia hemisphaerica|type=CDS|length=19410bp|location=Sequence derived from alignment at sc0000596:107101..112151+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00026901 vs. Swiss-Prot (Human)
Match: CC148 (Coiled-coil domain-containing protein 148 OS=Homo sapiens GN=CCDC148 PE=1 SV=2) HSP 1 Score: 152.525 bits (384), Expect = 4.420e-39 Identity = 162/609 (26.60%), Postives = 291/609 (47.78%), Query Frame = 1
Query: 106 YKPVNYEKVQLLTQIRKSSANRGLKRVEKLEQNVKKSREEQMIQEHRRLWEIEMRKLKESEEKVLREIELLHPLAPNLNEKTSAKEELYEEITDYEDHLRYELKRFGKGTVDTVLMLREDLLSWLKTNRHKLAIGH-HDSQQEDGIIKTIESVKQQQSHLMEDLADQRREIEEEIFSMVYEQDLQPTDHGYETDRPSSSCSAMSAHTIASTSCYSTFGKLPRIELGPPLHLNELYCPDEQLRENCLLEFDVLDERYSIELETLEEQYHDVISNMPNNGWSDDDCLRFRHTINQYNSISNNRRQMYLHRLAIEFPEKTPRDIKNFEQFAFRHKSLQRRMKALLLAWRRDREDLILRVTAIFHEATLQYKKKQKDMIEHTKQKFVCNFLREKLNDYREERLELMKLEADEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXIQEYKERQNIHTAQLEELDQLRLMELQERRAMQRCHDMERVRYRDEVRTEKLEDFRQEKLNEEMEQVEKEKRMKKITEQINSNVKEDANRIYEPTQTTLAHARVEDHVERDAKAPLFNVYTYNVNQVAQDKRVKIEAALRRANLHMTDYGRNMIANAQPPSKPRPDMQSTAF 1929
YKPV+Y++++ LT+ +K ++ ++ K K S+E+ +I++H+++W E ++L E K+ EI+ L LNE+ E L ++T++E L + + K ++ + LR DL H L H H +++ ++ VK+Q + E L +++ IE ++ + ++ DH E P EL P+ L L CP L+ + L EF ++Y +L+ Q D+ N S++D ++ ++QY RR +YL L FP K+ D+ E++ +++ + L+ W ++++D I + EA ++ + + KQ+ +C L+ K+ +R + E+ +LE + R E E K K +KKE +R ++K+KI++Y ++ ++E D RL EL++ A Q D ERV+YR E+ +L + ++ L E E E+ +R++ + +Q+ + D R+ T + A +E E + PLF + TYN Q+ D R++ E ALR A LH T Y + ++ P PR DM+ST F
Sbjct: 24 YKPVDYQQLRALTEAKKLASASAKLKIRKAMLTSKLSKEQTLIKQHKQVWWQEYQRLNEVRCKMESEIKSL------LNEENIGNECLC-DLTNFEQELSEQQCTYLKNVINPIQQLRADLKY---RQHHTLQHSHPHIEFNSMKVLEEVDFVKKQLKTVFERLRLEQQRIENDL----SDWSIKILDHSLEEKTN------------------------PLSEL--PIELESLECPYPDLKSSILSEFYKFTQKYQKKLQDFNLQLEDIYRNC---QLSEEDHWIYQAILDQYPGDLFGRRTLYLDMLQRYFPHKSRHDLVEHEKYCDQYRFAIEQQNILISNWNKNKKDFIQKAVLTLTEACATHEMESMLAKDKKKQQELCADLKAKVRQWRAHQEEVARLEMEISARRREKEEEKEKLWKKKELLQRAEKKKKIKKYWAKKKQKWQEMEMRDLQRLEELKKLIAEQSLKDRERVKYRQELLERRLMEKKEVALQEAHEDKERARRLEALRKQVAVVAQFDPVRMMSDTMASKARMGIEIEEEFILQKPLFTLNTYNEQQIISDPRLRFELALREAGLHRTLYAKEILPKISPQKPPRKDMESTVF 589 The following BLAST results are available for this feature:
BLAST of TCONS_00026901 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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