TCONS_00026872 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026872
Unique NameTCONS_00026872
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length499

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026872 ID=TCONS_00026872|Name=TCONS_00026872|organism=Clytia hemisphaerica|type=transcript|length=499bp
GTCATATTGTTCATGTGCAAGTACATTGAGAAAGAGACATAGctgttcaa
taaaaaaatataaagaaatccACAATGTAAAGATGTCGTCACTAAGGCCA
AAAGTTATTCAACTTTACAAACAgctGCTATTTTATGGCAAAGAATATCC
TCTTGGTTTTGACTACTTTAAGCCAAAATTGAAGAATgcttttatgaaaa
ataaagatgTTACAGATCCAGAGAAAATCCAAAAACTTATAGATCATGGT
GATTATATTGTGAAGGAATTAGAAGCGTTGTATATGTTACGCAAGTACAG
GACATTGAAAAGAAGATATTACAATGACTAAATTAAACCgcacaattttt
tgtttttaactatTATTAAATCATGAGTTGTATTATAGtataattgattt
tttttatattaaataAAGTGTAATAGTACTGTTATTTTTGGGTTCATTGT
ATTACTTCTGTAATTTCTTGTTTCTGATGTATGACTTCTTTGCTTATTG
Run BLAST on NCBI

protein sequence of TCONS_00026872-protein

>TCONS_00026872-protein ID=TCONS_00026872-protein|Name=TCONS_00026872-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
SYCSCASTLRKRHSCSIKKYKEIHNVKMSSLRPKVIQLYKQLLFYGKEYP
LGFDYFKPKLKNAFMKNKDVTDPEKIQKLIDHGDYIVKELEALYMLRKYR
TLKRRYYND
Run BLAST on NCBI

transcript from alignment at sc0000594:74625..77372+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026872 ID=TCONS_00026872|Name=TCONS_00026872|organism=Clytia hemisphaerica|type=transcript|length=2748bp|location=Sequence derived from alignment at sc0000594:74625..77372+ (Clytia hemisphaerica)
GTCATATTGTTCATGTGCAAGTACATTGAGAAAGAGGTAACAGATGTTGT
TTTGCCTTTTCTTCACTTCATCATTTGCACCACTTGCcaaaattttgagt
tatttCTCTGGCAGGTTGCATGAAAATTAACATAATCTGGGCCATTCcac
cagaatttgtctgtaacacagccagatgatctcaatcgaacaaacggaat
tgacgatcgaaccagttgaaccaaatcgaacacaatcgactgattgaaat
tcaattgtcgaatgcaatcgaatctcaatcgaacgtcaaaattctgggta
atattcgattggttcgattgttgttcgatcgactggtttgatcgtcgatt
ccgttcgattgatgagatcgtctggctttattcttgcagcttcccaacat
ccaagctctcaaacatcacaagccgaatgaaattactttcgatttctcgt
agaaattatgcaatgaacaagctgggggtcaatgaatcgacgatcgaacg
cacaatcgaacatcaattgaaggcaatcgaatatcaattgaATCTAAAAA
TTGTGGTAATAtacgattgagattcgattgcgtttgacaatcgaatttca
atcggtcgattgcgttcgatttggttcgattggttcgatcgtcgattccg
ttcgattgagatcgtgtGGTAACAGGTCAGGGctatcattattgattact
tcaatCACAATCAAACGTTCAAAtagtaccgtaacttggtctaatgtcag
tTAGGGAAACCGACAAGGGGACAAAGACAGGGGCGCCTGctagcttcgag
ggtggtaacgccaaaacgcccaatacgATCTTCCAACAAAAAGCGAGTTA
AttaccgcgcgagttacgtcatacactccacTGCAGTgcacaacgaacgg
tgttttagtgaatatcaataattataagaatatcttatgtgcttaaattc
agtaaactttgagtacTTCATTGAATATTAAGAAGATAAGAATttaaaaa
tgcgctggataattttcattgtaacagtttggtcaatcattgttgaaagt
ttgaataaaaatttccgacgcaaaaaaaaacttcagccaattaaaagcac
agtgtgcttatatttactatgtttgctacatcgtgtgggctaaaaaaagt
gcgaaaagacacgaacgtcatttttcaatgagtgttgttatgatttttta
gatcgtggtcgcgtacaggaactcgccaaaagTTCCTAACTGaatgtcga
catcccttgtctaaattcgacacccttttctagagctgaaaataatagaa
aggtcgaaagtatttttctttacttattagtggtaagagaggaaaaattc
tttttcaatcaccgAATTtcagctttcatattattcctatctctaaagaa
gggtgtcgaaattagaagacggatgtcgagattagaccaacttacggtat
gtcTGGTATAGAGCTTGAAATTTTGCGAAAAGGAGCTAAAATTCtgttaa
atttgtttttcactgttttcaattttgtttacatttgattTACGGcaacc
attttgaaattcggaCTGTAGCAGGCTCAACGAGAGCAACTTTTCTAGCC
AACTTCAAATTGACCCGAGGGGTCAAAAAAATGGGTGTGAACCCTCTCTT
TTTGATATGATATACTGTGAAGTCGGTAATGCAATCAGTGGAGGGAAAAG
GGAGATAAAAGGGAGGGCGCTCAAAATAAAAAGGACCTAAGAAGCCATCA
AATGTtgtaaatgaaataaaatgattGCTTCCCCAGTAGAGGAGAGGGAA
AGCTTCCAAAAGGGCATCTCGCAGGCTTTGCTTTCTTATAAGCTCCTGAT
TTGTCACAAGCCTGCACAAGCTCCTGATCTGTGACGTTTCGAATGTTTGA
TGCAACTTTTAGAATGCAAgagaagaaaaagtgaaaatcacgTGAAAAGA
AAGAGAACACACTCAGAAGGAGTGtatttcatcactatttttggtaaaag
ttcacgtgataacACGAAGGTCTCATTTtaaatgtactccaaatcgcttg
gggggtcACATATGTGCAACATGACAAGCATACAACAACATACATATTTA
CCCAGATATACCACTGCAATGGTGGATGAAAGTATTAAAATTTCTCTCTG
ATTTTTATTTCAGACATAGctgttcaataaaaaaatataaagaaatccAC
AATGTAAAGATGTCGTCACTAAGGCCAAAAGTTATTCAACTTTACAAACA
ggttgtttattttttcatatttgctAAACTTTGGTTTTACTCAACCTGCA
TTTAACATTTAACTTTCATTGATAATAGTATGTTATTATAATTAACTAtg
ctatttttcttttcatttttaagctGCTATTTTATGGCAAAGAATATCCT
CTTGGTTTTGACTACTTTAAGCCAAAATTGAAGAATgcttttatgaaaaa
taaagatgTTACAGATCCAGAGAAAATCCAAAAACTTATAGATCATGGTG
ATTATATTGTGAAGGAATTAGAAGCGTTGTATATGTTACGCAAGTACAGG
ACATTGAAAAGAAGATATTACAATGACTAAATTAAACCgcacaatttttt
gtttttaactatTATTAAATCATGAGTTGTATTATAGtataattgatttt
ttttatattaaataAAGTGTAATAGTACTGTTATTTTTGGGTTCATTGTA
TTACTTCTGTAATTTCTTGTTTCTGATGTATGACTTCTTTGCTTATTG

Coding sequence (CDS) from alignment at sc0000594:74625..77372+

>TCONS_00026872 ID=TCONS_00026872|Name=TCONS_00026872|organism=Clytia hemisphaerica|type=CDS|length=990bp|location=Sequence derived from alignment at sc0000594:74625..77372+ (Clytia hemisphaerica)
TCATATTGTTCATGTGCAAGTACATTGAGAAAGAGACATAGctgttcaat
aaaaaaatataaagaaatccACAATGTAAAGATGTCGTCACTAAGGCCAA
AAGTTATTCAACTTTACAAACAgctGCTATTTTATGGCAAAGAATATCCT
CTTGGTTTTGACTACTTTAAGCCAAAATTGAAGAATgcttttatgaaaaa
taaagatgTTACAGATCCAGAGAAAATCCAAAAACTTATAGATCATGGTG
ATTATATTGTGAAGGAATTAGAAGCGTTGTATATGTTACGCAAGTACAGG
ACATTGAAAAGAAGATATTACAATGACTAATCATATTGTTCATGTGCAAG
TACATTGAGAAAGAGACATAGctgttcaataaaaaaatataaagaaatcc
ACAATGTAAAGATGTCGTCACTAAGGCCAAAAGTTATTCAACTTTACAAA
CAgctGCTATTTTATGGCAAAGAATATCCTCTTGGTTTTGACTACTTTAA
GCCAAAATTGAAGAATgcttttatgaaaaataaagatgTTACAGATCCAG
AGAAAATCCAAAAACTTATAGATCATGGTGATTATATTGTGAAGGAATTA
GAAGCGTTGTATATGTTACGCAAGTACAGGACATTGAAAAGAAGATATTA
CAATGACTAATCATATTGTTCATGTGCAAGTACATTGAGAAAGAGACATA
GctgttcaataaaaaaatataaagaaatccACAATGTAAAGATGTCGTCA
CTAAGGCCAAAAGTTATTCAACTTTACAAACAgctGCTATTTTATGGCAA
AGAATATCCTCTTGGTTTTGACTACTTTAAGCCAAAATTGAAGAATgctt
ttatgaaaaataaagatgTTACAGATCCAGAGAAAATCCAAAAACTTATA
GATCATGGTGATTATATTGTGAAGGAATTAGAAGCGTTGTATATGTTACG
CAAGTACAGGACATTGAAAAGAAGATATTACAATGACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015100XLOC_015100Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026872-proteinTCONS_00026872-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026872-exon-sc0000594-1491911889:74625..74660TCONS_00026872-exon-sc0000594-1491911889:74625..74660Clytia hemisphaericaexon
TCONS_00026872-exon-sc0000594-1510915933:74625..74660TCONS_00026872-exon-sc0000594-1510915933:74625..74660Clytia hemisphaericaexon
TCONS_00026872-exon-sc0000594-1575043694:74625..74660TCONS_00026872-exon-sc0000594-1575043694:74625..74660Clytia hemisphaericaexon
TCONS_00026872-exon-sc0000594-1491911889:76788..76875TCONS_00026872-exon-sc0000594-1491911889:76788..76875Clytia hemisphaericaexon
TCONS_00026872-exon-sc0000594-1510915933:76788..76875TCONS_00026872-exon-sc0000594-1510915933:76788..76875Clytia hemisphaericaexon
TCONS_00026872-exon-sc0000594-1575043694:76788..76875TCONS_00026872-exon-sc0000594-1575043694:76788..76875Clytia hemisphaericaexon
TCONS_00026872-exon-sc0000594-1491911889:76998..77372TCONS_00026872-exon-sc0000594-1491911889:76998..77372Clytia hemisphaericaexon
TCONS_00026872-exon-sc0000594-1510915933:76998..77372TCONS_00026872-exon-sc0000594-1510915933:76998..77372Clytia hemisphaericaexon
TCONS_00026872-exon-sc0000594-1575043694:76998..77372TCONS_00026872-exon-sc0000594-1575043694:76998..77372Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000594supercontigsc0000594:74625..77372 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
97.7392	96.8155	113.308	127.24	50.5852	20.7679	27.0544	26.4464	21.2884	13.0507	17.2377	13.514	4.66216	6.59914	8.24381	8.9906	15.1471	12.9396	10.4004	5.37839	53.1346	48.3788	98.1954	93.5348	7.46205	28.437	37.2422	37.911	45.7459	43.5605
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
Blast
[Close]
BLAST of TCONS_00026872 vs. Swiss-Prot (Human)
Match: ETFR1 (Electron transfer flavoprotein regulatory factor 1 OS=Homo sapiens GN=ETFRF1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.558e-16
Identity = 38/64 (59.38%), Postives = 54/64 (84.38%), Query Frame = 2 
Query:   86 SSLRPKVIQLYKQLLFYGKEYPLGFDYFKPKLKNAFMKNKDVTDPEKIQKLIDHGDYIVKELEA 277
            +SLR +V++LYK LL+ G++YP G DYFK +LKN F+KNKDV +PEKI++LI  G++++KELEA
Sbjct:    5 NSLRGEVLKLYKNLLYLGRDYPKGADYFKKRLKNIFLKNKDVKNPEKIKELIAQGEFVMKELEA 68
The following BLAST results are available for this feature:
BLAST of TCONS_00026872 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ETFR16.558e-1659.38Electron transfer flavoprotein regulatory factor 1... [more]
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