TCONS_00026870 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026870
Unique NameTCONS_00026870
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length762

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026870 ID=TCONS_00026870|Name=TCONS_00026870|organism=Clytia hemisphaerica|type=transcript|length=762bp
ACAGTTGATATGGATGATTATATGGATTTGAGATTCTTTGGGTCTTGGAT
GCTTCGGCGAAATAACTACTTTGATTATAATCATACATGTGTTGAAGCAC
TCGAAATATTTACCTCGCCTGCAGTctataacaatttttttctgtgcAAT
AAATCAAATACTGACTGTTATAAGTTCGTTCTGGTTTTTCAGATGATTAT
AATAACACCCTCCCCTATAAAGTATATTGAACTgaaatcaaattgaaaaa
tcattttttggcTAGCTGTAACCACCGACTGGTTATCTGCAAGCTTGTAC
AGAGTCACTTTTTAGATAATCAGTGAAAATCGGTATTTTTCAAGCTACGC
TAGAAAAATTCAAGACTGTAATTGCAAATTCATTGTTTTACATTTCGGAT
TTCGAAGGTTGCTAGTTTATTGGAGTACTGAAAAAATGAGTCACCCCTCC
CCTCTTATTTTTGCAGACGCTCCCTAATTAGTTTATTTTATGGAAAAGCA
CCCATTTCCATTTATTTACACCCATCccgtttatgatatttttctaaaat
gttaaCCACCCCCTGCTATTAGGCCCCCCCCCACAATTAGCTTCCAAAGA
GTAGGAGAGATTGGGGTATAATTGGTACTCCTCAAGGAAAGCATCTCAAA
TAGTTTACAAATAGATTTTAAgtataaaaatgttcaaaattggCAATTTC
TTTCTCCGAAAAAACaggaaatgggctcttccagaaaaaaaaccgttcat
ggggggtggagg
Run BLAST on NCBI

transcript from alignment at sc0000591:241886..242647

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026870 ID=TCONS_00026870|Name=TCONS_00026870|organism=Clytia hemisphaerica|type=transcript|length=762bp|location=Sequence derived from alignment at sc0000591:241886..242647 (Clytia hemisphaerica)
cctccaccccccatgaacggttttttttctggaagagcccatttcctGTT
TTTTCGGAGAAAGAAATTGccaattttgaacatttttatacTTAAAATCT
ATTTGTAAACTATTTGAGATGCTTTCCTTGAGGAGTACCAATTATACCCC
AATCTCTCCTACTCTTTGGAAGCTAATTGTGGGGGGGGGCCTAATAGCAG
GGGGTGGttaacattttagaaaaatatcataaacggGATGGGTGTAAATA
AATGGAAATGGGTGCTTTTCCATAAAATAAACTAATTAGGGAGCGTCTGC
AAAAATAAGAGGGGAGGGGTGACTCATTTTTTCAGTACTCCAATAAACTA
GCAACCTTCGAAATCCGAAATGTAAAACAATGAATTTGCAATTACAGTCT
TGAATTTTTCTAGCGTAGCTTGAAAAATACCGATTTTCACTGATTATCTA
AAAAGTGACTCTGTACAAGCTTGCAGATAACCAGTCGGTGGTTACAGCTA
gccaaaaaatgatttttcaatttgatttcAGTTCAATATACTTTATAGGG
GAGGGTGTTATTATAATCATCTGAAAAACCAGAACGAACTTATAACAGTC
AGTATTTGATTTATTgcacagaaaaaaattgttatagACTGCAGGCGAGG
TAAATATTTCGAGTGCTTCAACACATGTATGATTATAATCAAAGTAGTTA
TTTCGCCGAAGCATCCAAGACCCAAAGAATCTCAAATCCATATAATCATC
CATATCAACTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015098XLOC_015098Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026870-exon-sc0000591-1491911889:241886..242647TCONS_00026870-exon-sc0000591-1491911889:241886..242647Clytia hemisphaericaexon
TCONS_00026870-exon-sc0000591-1510915933:241886..242647TCONS_00026870-exon-sc0000591-1510915933:241886..242647Clytia hemisphaericaexon
TCONS_00026870-exon-sc0000591-1575043694:241886..242647TCONS_00026870-exon-sc0000591-1575043694:241886..242647Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000591supercontigsc0000591:241886..242647 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.320775	0.418841	0.0888472	0.781732	0.311135	0.0683666	0.247444	0.171644	0.0571573	0.145111	0.21191	0.0706654	0.222966	0.398796	0.138998	0.300089	0.697624	0.304063	0.382792	0.381667	0.799997	1.08642	0.358005	0.494477	0.137761	0.171693	0.276318	0.572273	0.194831	0.0742862
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026870 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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