TCONS_00026857 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026857
Unique NameTCONS_00026857
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length669

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026857 ID=TCONS_00026857|Name=TCONS_00026857|organism=Clytia hemisphaerica|type=transcript|length=669bp
CAATATGTTGGGACTGAATTCACGAAAACGAAGGACAGACTCGATAAACT
GGAACAAGTAATTCCTGAAGGTGTGGACCTGGTTATGTATCAAAACGAGA
TCACAGCTCTGAAATTCCGTACTGAACAACTAGAAACTTCATTAAACAAA
CAGGCAAGCAATAATGAAAGCTTATCCAAACTTCTGGACGACCAAATCAA
TCGTAATCTCAGAGAAACTCTTATATTTCGTGGAGTCCCAGGCAACTGCA
ATGAGTCCTGGTCAAAAACCTCCAATAAATTGGCCAAATTTCTGAGTGAC
ATCGATCGAAATCACTTGAGAGTCAACGATAGTTTTCACGACATTGACCG
TGCTCATCGACCAAACCCCAACGTGGCTGCATCTAACAATGCTGATAGCA
ATAGAAAAACTCCGCCTATATTTGTTCGATTCAACTCATGGAAGGCGGCA
CAGTATTATATGCAACAAGTTATTGACTTTAACAAGAATTCACGTGAAGA
AGCATCTGTGTTTGTTGATCAGATGTACTCCAAGGAGGTGACCGAAAGAC
GTAATAAGGCAATGGACTTAAGGAAAGAACTCAAAAAGAACGGTGACAAA
TCAAAGATGTATGTTAAATATCCTGCCACTTTGGTGAAATTTGATGACAC
TGCAAAAAAATACATAgac
Run BLAST on NCBI

protein sequence of TCONS_00026857-protein

>TCONS_00026857-protein ID=TCONS_00026857-protein|Name=TCONS_00026857-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
QYVGTEFTKTKDRLDKLEQVIPEGVDLVMYQNEITALKFRTEQLETSLNK
QASNNESLSKLLDDQINRNLRETLIFRGVPGNCNESWSKTSNKLAKFLSD
IDRNHLRVNDSFHDIDRAHRPNPNVAASNNADSNRKTPPIFVRFNSWKAA
QYYMQQVIDFNKNSREEASVFVDQMYSKEVTERRNKAMDLRKELKKNGDK
SKMYVKYPATLVKFDDTAKKYID
Run BLAST on NCBI

transcript from alignment at sc0000591:120132..120800

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026857 ID=TCONS_00026857|Name=TCONS_00026857|organism=Clytia hemisphaerica|type=transcript|length=669bp|location=Sequence derived from alignment at sc0000591:120132..120800 (Clytia hemisphaerica)
gtcTATGTATTTTTTTGCAGTGTCATCAAATTTCACCAAAGTGGCAGGAT
ATTTAACATACATCTTTGATTTGTCACCGTTCTTTTTGAGTTCTTTCCTT
AAGTCCATTGCCTTATTACGTCTTTCGGTCACCTCCTTGGAGTACATCTG
ATCAACAAACACAGATGCTTCTTCACGTGAATTCTTGTTAAAGTCAATAA
CTTGTTGCATATAATACTGTGCCGCCTTCCATGAGTTGAATCGAACAAAT
ATAGGCGGAGTTTTTCTATTGCTATCAGCATTGTTAGATGCAGCCACGTT
GGGGTTTGGTCGATGAGCACGGTCAATGTCGTGAAAACTATCGTTGACTC
TCAAGTGATTTCGATCGATGTCACTCAGAAATTTGGCCAATTTATTGGAG
GTTTTTGACCAGGACTCATTGCAGTTGCCTGGGACTCCACGAAATATAAG
AGTTTCTCTGAGATTACGATTGATTTGGTCGTCCAGAAGTTTGGATAAGC
TTTCATTATTGCTTGCCTGTTTGTTTAATGAAGTTTCTAGTTGTTCAGTA
CGGAATTTCAGAGCTGTGATCTCGTTTTGATACATAACCAGGTCCACACC
TTCAGGAATTACTTGTTCCAGTTTATCGAGTCTGTCCTTCGTTTTCGTGA
ATTCAGTCCCAACATATTG

Coding sequence (CDS) from alignment at sc0000591:120132..120800

>TCONS_00026857 ID=TCONS_00026857|Name=TCONS_00026857|organism=Clytia hemisphaerica|type=CDS|length=669bp|location=Sequence derived from alignment at sc0000591:120132..120800 (Clytia hemisphaerica)
gtcTATGTATTTTTTTGCAGTGTCATCAAATTTCACCAAAGTGGCAGGAT
ATTTAACATACATCTTTGATTTGTCACCGTTCTTTTTGAGTTCTTTCCTT
AAGTCCATTGCCTTATTACGTCTTTCGGTCACCTCCTTGGAGTACATCTG
ATCAACAAACACAGATGCTTCTTCACGTGAATTCTTGTTAAAGTCAATAA
CTTGTTGCATATAATACTGTGCCGCCTTCCATGAGTTGAATCGAACAAAT
ATAGGCGGAGTTTTTCTATTGCTATCAGCATTGTTAGATGCAGCCACGTT
GGGGTTTGGTCGATGAGCACGGTCAATGTCGTGAAAACTATCGTTGACTC
TCAAGTGATTTCGATCGATGTCACTCAGAAATTTGGCCAATTTATTGGAG
GTTTTTGACCAGGACTCATTGCAGTTGCCTGGGACTCCACGAAATATAAG
AGTTTCTCTGAGATTACGATTGATTTGGTCGTCCAGAAGTTTGGATAAGC
TTTCATTATTGCTTGCCTGTTTGTTTAATGAAGTTTCTAGTTGTTCAGTA
CGGAATTTCAGAGCTGTGATCTCGTTTTGATACATAACCAGGTCCACACC
TTCAGGAATTACTTGTTCCAGTTTATCGAGTCTGTCCTTCGTTTTCGTGA
ATTCAGTCCCAACATATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015085XLOC_015085Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026857-exon-sc0000591-1491911889:120132..120800TCONS_00026857-exon-sc0000591-1491911889:120132..120800Clytia hemisphaericaexon
TCONS_00026857-exon-sc0000591-1510915933:120132..120800TCONS_00026857-exon-sc0000591-1510915933:120132..120800Clytia hemisphaericaexon
TCONS_00026857-exon-sc0000591-1575043694:120132..120800TCONS_00026857-exon-sc0000591-1575043694:120132..120800Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026857-proteinTCONS_00026857-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000591supercontigsc0000591:120132..120800 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.462753	0	0.261976	0.170869	4.16032	3.94505	2.57808	2.87772	0.779906	2.17359	1.48463	0.924573	1.59011	0.745767	0.481739	0.657974	1.04216	0.890151	0.327945	1.2011	0.223708	0.982052	0.0884306	0.0803963	1.57332	2.43879	0.846035	0.790048	0.428017	0.959379
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026857 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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