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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026849 ID=TCONS_00026849|Name=TCONS_00026849|organism=Clytia hemisphaerica|type=transcript|length=842bp
NTTCTCTGTATTTTCCGTTTGAAAAAGTTCTATTGGGTCGATCAATATAT
CTATCCAGtatgtttttcttgaaaacatcTTCACTATCCTCAGGAAGCTC
AACCAATTCCTCCTCAGACTTGAACATATGAAAACGCTCCTCTGGTAAAT
GAGTATTTACAAACATGACCTGAGGGTATCCTTTGCGCAACCAAAGTTCA
GGCATCAACTGATAGACTGCTTCTTGAACAGAACATTCTCTGTTATCACT
GTATGCTTGAGCTAACTTTTGCATTGTTTCAAACTTATCTTTTTCAAGTT
CTTTACACTCTGCTAAAGCCTCCTTCATTGCATTTGAGCTggaagtttca
ttttttgaaaagtatGCACACATATATTGCACTGCTTTGTAATGATTAAA
AACTGGTTGGGGGTCGATATTGGCTTGCCATGCCAAGAGTCCCTCTTCAA
AATAGTTGTTTACAAAACAAGAATTTGTATTTCTTTTAAGGTGAACCTGA
AAGTCATTTTCATCTGTTGATATTGATAACGCAACTTCATAATCAGTAAG
CGAAATATCTAGAGACTCAAGAACCTCGTCaatatttggaatattttcAT
AGTTTGGTCTTTCAAGgtacaaaaagtttcttttttgaggatttaaaaat
tcatcaatacaatttttaacttttgaaaatatttctttttgcttcAATCG
AATTTGATCCTTATCAGGTGTATCTGGAGGTAATGGTTTTGCGATTATTG
TTCTGTGGGTAAAAAATTTACCGAATCCAAAACGACATTCTTTATTTCCA
TACTTTTGACATGTTTTTGAATGGCGGTGAACCTGATACTGC Run BLAST on NCBI protein sequence of TCONS_00026849-protein >TCONS_00026849-protein ID=TCONS_00026849-protein|Name=TCONS_00026849-protein|organism=Clytia hemisphaerica|type=polypeptide|length=280bp
QYQVHRHSKTCQKYGNKECRFGFGKFFTHRTIIAKPLPPDTPDKDQIRLK
QKEIFSKVKNCIDEFLNPQKRNFLYLERPNYENIPNIDEVLESLDISLTD
YEVALSISTDENDFQVHLKRNTNSCFVNNYFEEGLLAWQANIDPQPVFNH
YKAVQYMCAYFSKNETSSSNAMKEALAECKELEKDKFETMQKLAQAYSDN
RECSVQEAVYQLMPELWLRKGYPQVMFVNTHLPEERFHMFKSEEELVELP
EDSEDVFKKNILDRYIDRPNRTFSNGKYRE Run BLAST on NCBI transcript from alignment at sc0000591:2538..3379 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026849 ID=TCONS_00026849|Name=TCONS_00026849|organism=Clytia hemisphaerica|type=transcript|length=842bp|location=Sequence derived from alignment at sc0000591:2538..3379 (Clytia hemisphaerica)
GCAGTATCAGGTTCACCGCCATTCAAAAACATGTCAAAAGTATGGAAATA
AAGAATGTCGTTTTGGATTCGGTAAATTTTTTACCCACAGAACAATAATC
GCAAAACCATTACCTCCAGATACACCTGATAAGGATCAAATTCGATTgaa
gcaaaaagaaatattttcaaaagttaaaaattgtattgatgaatttttaa
atcctcaaaaaagaaactttttgtacCTTGAAAGACCAAACTATgaaaat
attccaaatattGACGAGGTTCTTGAGTCTCTAGATATTTCGCTTACTGA
TTATGAAGTTGCGTTATCAATATCAACAGATGAAAATGACTTTCAGGTTC
ACCTTAAAAGAAATACAAATTCTTGTTTTGTAAACAACTATTTTGAAGAG
GGACTCTTGGCATGGCAAGCCAATATCGACCCCCAACCAGTTTTTAATCA
TTACAAAGCAGTGCAATATATGTGTGCatacttttcaaaaaatgaaactt
ccAGCTCAAATGCAATGAAGGAGGCTTTAGCAGAGTGTAAAGAACTTGAA
AAAGATAAGTTTGAAACAATGCAAAAGTTAGCTCAAGCATACAGTGATAA
CAGAGAATGTTCTGTTCAAGAAGCAGTCTATCAGTTGATGCCTGAACTTT
GGTTGCGCAAAGGATACCCTCAGGTCATGTTTGTAAATACTCATTTACCA
GAGGAGCGTTTTCATATGTTCAAGTCTGAGGAGGAATTGGTTGAGCTTCC
TGAGGATAGTGAAgatgttttcaagaaaaacataCTGGATAGATATATTG
ATCGACCCAATAGAACTTTTTCAAACGGAAAATACAGAGAAN Coding sequence (CDS) from alignment at sc0000591:2538..3379 >TCONS_00026849 ID=TCONS_00026849|Name=TCONS_00026849|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at sc0000591:2538..3379 (Clytia hemisphaerica)
CAGTATCAGGTTCACCGCCATTCAAAAACATGTCAAAAGTATGGAAATAA
AGAATGTCGTTTTGGATTCGGTAAATTTTTTACCCACAGAACAATAATCG
CAAAACCATTACCTCCAGATACACCTGATAAGGATCAAATTCGATTgaag
caaaaagaaatattttcaaaagttaaaaattgtattgatgaatttttaaa
tcctcaaaaaagaaactttttgtacCTTGAAAGACCAAACTATgaaaata
ttccaaatattGACGAGGTTCTTGAGTCTCTAGATATTTCGCTTACTGAT
TATGAAGTTGCGTTATCAATATCAACAGATGAAAATGACTTTCAGGTTCA
CCTTAAAAGAAATACAAATTCTTGTTTTGTAAACAACTATTTTGAAGAGG
GACTCTTGGCATGGCAAGCCAATATCGACCCCCAACCAGTTTTTAATCAT
TACAAAGCAGTGCAATATATGTGTGCatacttttcaaaaaatgaaacttc
cAGCTCAAATGCAATGAAGGAGGCTTTAGCAGAGTGTAAAGAACTTGAAA
AAGATAAGTTTGAAACAATGCAAAAGTTAGCTCAAGCATACAGTGATAAC
AGAGAATGTTCTGTTCAAGAAGCAGTCTATCAGTTGATGCCTGAACTTTG
GTTGCGCAAAGGATACCCTCAGGTCATGTTTGTAAATACTCATTTACCAG
AGGAGCGTTTTCATATGTTCAAGTCTGAGGAGGAATTGGTTGAGCTTCCT
GAGGATAGTGAAgatgttttcaagaaaaacataCTGGATAGATATATTGA
TCGACCCAATAGAACTTTTTCAAACGGAAAATACAGAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026849-exon-sc0000591-1491911889:2538..3379 | TCONS_00026849-exon-sc0000591-1491911889:2538..3379 | Clytia hemisphaerica | exon |
| TCONS_00026849-exon-sc0000591-1510915933:2538..3379 | TCONS_00026849-exon-sc0000591-1510915933:2538..3379 | Clytia hemisphaerica | exon |
| TCONS_00026849-exon-sc0000591-1575043694:2538..3379 | TCONS_00026849-exon-sc0000591-1575043694:2538..3379 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000591 | supercontig | sc0000591:2538..3379 . |
Blast
The following BLAST results are available for this feature:
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