TCONS_00026836 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026836
Unique NameTCONS_00026836
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length332

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026836 ID=TCONS_00026836|Name=TCONS_00026836|organism=Clytia hemisphaerica|type=transcript|length=332bp
CTAGGACTTACCCAAACCTTTTTCTTGTGGAATTTATAACACTCCTTATT
TGGGCTTTACGGATTATCTTTTCTTTCGGTTGAGTGGATCGTTCTGTAAA
CGTTTATCTAAAAGTTTGTTCTCTTAGTTTGATTGGTGGATTCTTTGCAA
CATTAGGTAATGTTTTTGTCAGGTTTGTATCGAAAATCTCGTGCTTACGT
AGTTGGTGGTTTGGTCTTTACCGAGAGGAATGTTCGAATTCCAGGGATTA
TCTTTTTTCTCACGGTTGGTCGAATCGTTCGTTAAACGTTTGTTTTCAGA
GTTCattctaaattttgattggtgaATTTACA
Run BLAST on NCBI

transcript from alignment at sc0000589:207550..207881

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026836 ID=TCONS_00026836|Name=TCONS_00026836|organism=Clytia hemisphaerica|type=transcript|length=332bp|location=Sequence derived from alignment at sc0000589:207550..207881 (Clytia hemisphaerica)
TGTAAATtcaccaatcaaaatttagaatGAACTCTGAAAACAAACGTTTA
ACGAACGATTCGACCAACCGTGAGAAAAAAGATAATCCCTGGAATTCGAA
CATTCCTCTCGGTAAAGACCAAACCACCAACTACGTAAGCACGAGATTTT
CGATACAAACCTGACAAAAACATTACCTAATGTTGCAAAGAATCCACCAA
TCAAACTAAGAGAACAAACTTTTAGATAAACGTTTACAGAACGATCCACT
CAACCGAAAGAAAAGATAATCCGTAAAGCCCAAATAAGGAGTGTTATAAA
TTCCACAAGAAAAAGGTTTGGGTAAGTCCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015066XLOC_015066Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026836-exon-sc0000589-1491911889:207550..207881TCONS_00026836-exon-sc0000589-1491911889:207550..207881Clytia hemisphaericaexon
TCONS_00026836-exon-sc0000589-1510915933:207550..207881TCONS_00026836-exon-sc0000589-1510915933:207550..207881Clytia hemisphaericaexon
TCONS_00026836-exon-sc0000589-1575043694:207550..207881TCONS_00026836-exon-sc0000589-1575043694:207550..207881Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000589supercontigsc0000589:207550..207881 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.30744	2.53138	3.88619	2.8409	0.777929	1.22946	1.48329	1.38864	0	0.602125	0.292218	0.384186	0	1.15484	0.621047	0.351522	0	0.443859	0.306608	0.962529	0	0.40807	0	0	0.619349	0	1.58198	0.422083	0.64027	0.607041
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026836 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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