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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026816 ID=TCONS_00026816|Name=TCONS_00026816|organism=Clytia hemisphaerica|type=transcript|length=2061bp
cctctactactTCTATTATTccaatctttctataattcgaacatgTTATC
AGTCATGAGAGAAACCCTATTAAACTACTTTCTATAATTTCAATCTCTCT
GCAATTCGAACGCAGAAGATTTCCCGTTCAAGTTAGAATAGGCAAGAGTN
CTCTGCAATTCGAACGCAGAAGATTCCCCGTTCAAGTTAGAATAGGCGAG
AGACAACAACTGTACCACGCCTTTTTATTTCATTCCAGGAACCAATATTA
GAATTATCAACggaaaaaaatcaaaggagGGCGACCAAAAGTATTTGATT
CATCAACAACTGCAAAAAAGTTTGTATCAACGAAGATGCGATCCTTCACA
AACGTGAATTAGTTTTCACAGAAGAGTGCTTCATGATTAATTTATATCTT
AATGAGGAAGAGCGCATAGTTCAACTAAGGAAAGATACAAATCTTAACAA
TATCGAAAGGAACTTCTTACTCAAAGAAATAAATGGAGAAGGAAAATTTA
TGTTCACAGCAAACTTTATTGCACCGTTAGAGGAACACAGAGTTATTCGA
GTTGTCGATAATCTTCGGAACGAGAAAATCCAAGGAAACGGATCAATGAA
GCAGTCATTCGTTTACTTAACAGACCATACCAATCAAGAGAAAATTTACT
CAAGTCTGAGATACCTCCAAAATGAAATGTCCTGGGATATTATTATCTAC
TGTCGAAGTTATCTGTGTCCATTTCAAGGATGGATAGCACCACACAGACT
CATATTCTTCCAACAAGAACGCGCTTTTCAGGCGAGTGAATACAAAAACT
TAATCGATGTAATCAAAGAACCAAACTACGACAGATATAAATTCTACCAA
GCCTTAAAACTCGAACCAGAATTCTTCAACGAAACATGTCTTCAAAACGT
CAACAAAATTCATATTGCAATGAAATACAATCAAGAGCTATATCTTCCTT
TAGCATTGCGAATTGTTAAGCGAGAAAACGAGAGAAGAAAACAAACCAAT
TTTACCATGAATCCACTTGAGATTATCTTTTACTCGAATCATATGTCTGA
TACACGATCTTGGGACGCTATTTTGGATAATTTACAACCCaaaggtcaaa
atgtcaaaTTATTCGGAACATGGACAAGGCATCCCTTATACGTCCGCAAT
AATTACTGGTACAATACTAAGCCAAATTATTCGGATTATTATGTTCCAGg
agaattttatttcaatattctTGGAGGTCAACTTTCGTCATTTGATTGTG
AGTTTTTCCGAGGTTTTATAAGCATGCAGAAGGTATATCGGATTGAGCAG
TCTCCAAGAACTGATAGATGTTTCGATCGAGTCAAAGTACCAATGTTTGA
AAAACCTGATGAACTTTATGGACTGATAAATAAATTTCTCTGTAAACACG
GttaactctctctctctctaattcgaacacgAATCTGATCGAATGAAATT
GATGGAAATCTAATACTTTTGAATAATAGAAAACATTTAACATTAAAGAG
TTTCtgtaagttcgaattatagaaagatttgaatgaaAGAGGTTTAGGAT
TACGCGTCCAGCGTAGTATATATGTTAATGGAAATAAAGTTAGactaaat
tttcactaaatctTAATTGTCAAACTACTGACTAAATCCTACTGAGATCT
TCCCAAAAGTTTCCTTTATCTAATGataatatttgattttttgaaaagga
agcCTCCAAAGTATTGAAGACATTGATCGAAGTTCagattgaaaatctaa
aaaaattctACAGCTATActaagtcaaaaaaaattctaacaaaacaaaag
aaaatattactTGAACTATATTGAGTATAATGACAAACTAAAGCCCATTA
TTTTAAGTGTAGTgtgcactaatctttgtttgcttgccaGTTTTTCAACG
AATGCTTCAATTTAAACATATTTTATCATATTTCTAAGATAATTCATAGC
ACTTGAATTGCTGgtgaaattattgaaaaagttttagaaaattaaCTTCT
TATCCTTTGGTGCTGGAAACTTCACCCTCCACAGAGGTACTACTGTTTTT
CACAAACAATG Run BLAST on NCBI protein sequence of TCONS_00026816-protein >TCONS_00026816-protein ID=TCONS_00026816-protein|Name=TCONS_00026816-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
MINLYLNEEERIVQLRKDTNLNNIERNFLLKEINGEGKFMFTANFIAPLE
EHRVIRVVDNLRNEKIQGNGSMKQSFVYLTDHTNQEKIYSSLRYLQNEMS
WDIIIYCRSYLCPFQGWIAPHRLIFFQQERAFQASEYKNLIDVIKEPNYD
RYKFYQALKLEPEFFNETCLQNVNKIHIAMKYNQELYLPLALRIVKRENE
RRKQTNFTMNPLEIIFYSNHMSDTRSWDAILDNLQPKGQNVKLFGTWTRH
PLYVRNNYWYNTKPNYSDYYVPGEFYFNILGGQLSSFDCEFFRGFISMQK
VYRIEQSPRTDRCFDRVKVPMFEKPDELYGLINKFLCKHG Run BLAST on NCBI transcript from alignment at sc0000589:53755..55969- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026816 ID=TCONS_00026816|Name=TCONS_00026816|organism=Clytia hemisphaerica|type=transcript|length=2215bp|location=Sequence derived from alignment at sc0000589:53755..55969- (Clytia hemisphaerica)
CCTCTACTACTTCTATTATTCCAATCTTTCTATAATTCGAACATGTTATC
AGTCATGAGAGAAACCCTATTAAACTACTTTCTATAATTTCAATCTCTCT
GCAATTCGAACGCAGAAGATTTCCCGTTCAAGTTAGAATAGGCAAGAGTN
CTCTGCAATTCGAACGCAGAAGATTCCCCGTTCAAGTTAGAATAGGCGAG
AGACAACAACTGTACCACGCCTTTTTATTTCATTCCAGGAACCAATATTA
GAATTATCAACGGAAAAAAATCAAAGGAGGGCGACCAAAAGTATTTGATT
CATCAACAACTGCAAAAAAGTTTGTATCAACGAAGATGCGATCCTTCACA
AACGTGGTAATCATTATATTGATATTGATAATTTACAATGTCGCATTCAC
CACACAAATAGATTTCACAAATTTGAAATGCACGGATCGTCGAAATGTCA
CTATCATGATTAATTCTTTAGATTGGTTACAAGCTGAGAAAATTTTATTC
TATATTTCAGAATTAGTTTTCACAGAAGAGTGCTTCATGATTAATTTATA
TCTTAATGAGGAAGAGCGCATAGTTCAACTAAGGAAAGATACAAATCTTA
ACAATATCGAAAGGAACTTCTTACTCAAAGAAATAAATGGAGAAGGAAAA
TTTATGTTCACAGCAAACTTTATTGCACCGTTAGAGGAACACAGAGTTAT
TCGAGTTGTCGATAATCTTCGGAACGAGAAAATCCAAGGAAACGGATCAA
TGAAGCAGTCATTCGTTTACTTAACAGACCATACCAATCAAGAGAAAATT
TACTCAAGTCTGAGATACCTCCAAAATGAAATGTCCTGGGATATTATTAT
CTACTGTCGAAGTTATCTGTGTCCATTTCAAGGATGGATAGCACCACACA
GACTCATATTCTTCCAACAAGAACGCGCTTTTCAGGCGAGTGAATACAAA
AACTTAATCGATGTAATCAAAGAACCAAACTACGACAGATATAAATTCTA
CCAAGCCTTAAAACTCGAACCAGAATTCTTCAACGAAACATGTCTTCAAA
ACGTCAACAAAATTCATATTGCAATGAAATACAATCAAGAGCTATATCTT
CCTTTAGCATTGCGAATTGTTAAGCGAGAAAACGAGAGAAGAAAACAAAC
CAATTTTACCATGAATCCACTTGAGATTATCTTTTACTCGAATCATATGT
CTGATACACGATCTTGGGACGCTATTTTGGATAATTTACAACCCAAAGGT
CAAAATGTCAAATTATTCGGAACATGGACAAGGCATCCCTTATACGTCCG
CAATAATTACTGGTACAATACTAAGCCAAATTATTCGGATTATTATGTTC
CAGGAGAATTTTATTTCAATATTCTTGGAGGTCAACTTTCGTCATTTGAT
TGTGAGTTTTTCCGAGGTTTTATAAGCATGCAGAAGGTATATCGGATTGA
GCAGTCTCCAAGAACTGATAGATGTTTCGATCGAGTCAAAGTACCAATGT
TTGAAAAACCTGATGAACTTTATGGACTGATAAATAAATTTCTCTGTAAA
CACGGTTAACTCTCTCTCTCTCTAATTCGAACACGAATCTGATCGAATGA
AATTGATGGAAATCTAATACTTTTGAATAATAGAAAACATTTAACATTAA
AGAGTTTCTGTAAGTTCGAATTATAGAAAGATTTGAATGAAAGAGGTTTA
GGATTACGCGTCCAGCGTAGTATATATGTTAATGGAAATAAAGTTAGACT
AAATTTTCACTAAATCTTAATTGTCAAACTACTGACTAAATCCTACTGAG
ATCTTCCCAAAAGTTTCCTTTATCTAATGATAATATTTGATTTTTTGAAA
AGGAAGCCTCCAAAGTATTGAAGACATTGATCGAAGTTCAGATTGAAAAT
CTAAAAAAATTCTACAGCTATACTAAGTCAAAAAAAATTCTAACAAAACA
AAAGAAAATATTACTTGAACTATATTGAGTATAATGACAAACTAAAGCCC
ATTATTTTAAGTGTAGTGTGCACTAATCTTTGTTTGCTTGCCAGTTTTTC
AACGAATGCTTCAATTTAAACATATTTTATCATATTTCTAAGATAATTCA
TAGCACTTGAATTGCTGGTGAAATTATTGAAAAAGTTTTAGAAAATTAAC
TTCTTATCCTTTGGTGCTGGAAACTTCACCCTCCACAGAGGTACTACTGT
TTTTCACAAACAATG Coding sequence (CDS) from alignment at sc0000589:53755..55969- >TCONS_00026816 ID=TCONS_00026816|Name=TCONS_00026816|organism=Clytia hemisphaerica|type=CDS|length=1023bp|location=Sequence derived from alignment at sc0000589:53755..55969- (Clytia hemisphaerica)
ATGATTAATTTATATCTTAATGAGGAAGAGCGCATAGTTCAACTAAGGAA
AGATACAAATCTTAACAATATCGAAAGGAACTTCTTACTCAAAGAAATAA
ATGGAGAAGGAAAATTTATGTTCACAGCAAACTTTATTGCACCGTTAGAG
GAACACAGAGTTATTCGAGTTGTCGATAATCTTCGGAACGAGAAAATCCA
AGGAAACGGATCAATGAAGCAGTCATTCGTTTACTTAACAGACCATACCA
ATCAAGAGAAAATTTACTCAAGTCTGAGATACCTCCAAAATGAAATGTCC
TGGGATATTATTATCTACTGTCGAAGTTATCTGTGTCCATTTCAAGGATG
GATAGCACCACACAGACTCATATTCTTCCAACAAGAACGCGCTTTTCAGG
CGAGTGAATACAAAAACTTAATCGATGTAATCAAAGAACCAAACTACGAC
AGATATAAATTCTACCAAGCCTTAAAACTCGAACCAGAATTCTTCAACGA
AACATGTCTTCAAAACGTCAACAAAATTCATATTGCAATGAAATACAATC
AAGAGCTATATCTTCCTTTAGCATTGCGAATTGTTAAGCGAGAAAACGAG
AGAAGAAAACAAACCAATTTTACCATGAATCCACTTGAGATTATCTTTTA
CTCGAATCATATGTCTGATACACGATCTTGGGACGCTATTTTGGATAATT
TACAACCCAAAGGTCAAAATGTCAAATTATTCGGAACATGGACAAGGCAT
CCCTTATACGTCCGCAATAATTACTGGTACAATACTAAGCCAAATTATTC
GGATTATTATGTTCCAGGAGAATTTTATTTCAATATTCTTGGAGGTCAAC
TTTCGTCATTTGATTGTGAGTTTTTCCGAGGTTTTATAAGCATGCAGAAG
GTATATCGGATTGAGCAGTCTCCAAGAACTGATAGATGTTTCGATCGAGT
CAAAGTACCAATGTTTGAAAAACCTGATGAACTTTATGGACTGATAAATA
AATTTCTCTGTAAACACGGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026816-exon-sc0000589-1575043694:55614..55969 | TCONS_00026816-exon-sc0000589-1575043694:55614..55969 | Clytia hemisphaerica | exon |
| TCONS_00026816-exon-sc0000589-1575043694:53755..55459 | TCONS_00026816-exon-sc0000589-1575043694:53755..55459 | Clytia hemisphaerica | exon |
| TCONS_00026816-exon-sc0000589-1510915933:55614..55969 | TCONS_00026816-exon-sc0000589-1510915933:55614..55969 | Clytia hemisphaerica | exon |
| TCONS_00026816-exon-sc0000589-1510915933:53755..55459 | TCONS_00026816-exon-sc0000589-1510915933:53755..55459 | Clytia hemisphaerica | exon |
| TCONS_00026816-exon-sc0000589-1491911889:55614..55969 | TCONS_00026816-exon-sc0000589-1491911889:55614..55969 | Clytia hemisphaerica | exon |
| TCONS_00026816-exon-sc0000589-1491911889:53755..55459 | TCONS_00026816-exon-sc0000589-1491911889:53755..55459 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000589 | supercontig | sc0000589:53755..55969 - |
Blast
The following BLAST results are available for this feature:
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