|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026815 ID=TCONS_00026815|Name=TCONS_00026815|organism=Clytia hemisphaerica|type=transcript|length=3477bp
CACCAATGAAACCGATCATCTCCTTCTCTCTATACTTCAGATGCGTCCAT
CCCTGTACCCATCCAATATCCACACTAAATACAAAAAAAGATCTACAGAA
GAACTCCTCGAATTATTCAACATACCAAGAATCCCACCAAGAAGAAAACC
AAAATTCAAAACACCATTTAAAAAGAACAAGACCCCAAACAAAACCAACA
CCCAGCTCCAACCACTGATAACGACCACGATAACGCCCAGAAACTCCACT
GCCACTGCATCACCTGTATACACCACTGGATCCCTGACACCCTCAACCAC
CAAAATCACACCTCCCTATAAAACAACGAATATCATCATTCCAACATTCT
ACACACCTCACTTTACTCTTCCAAATGAATGAACTATCACAACTACGCCA
ATTCCATCGAACACCAACAACTCATAACCAACAGACCCAACCGCACAACA
CTATACAATGATATTAATGGTAACGCCTTTTTCCCAATTCGAAGCTGGCC
ATCACACATCACAAACTGCTTCAATGAAGGTCACATATCAGACAAAGGAA
CATTTAAAATCCTAacatttttttatggaaatggAGGTTCACCATCTCTC
ATCATTCCCTACTTACACACTACAAGATGTACCACAACAACAACGCACAT
AGAGAATATCGTCTACCATCCATCCACGACCTcctcaaacaatcaaaaat
atggAAACAACCAAACCTCCCAGAAATCAAACGAAGAAAACTAGTTATCC
AAGAGCACACCAAAAACTTTAATGCCAGATTAATCCACAACCTCTCTGAC
CACAACCTTACCAATGAAGAACACCTCGTCCTTTGCAGAGGCCTAAATTA
CTCACCAGGCATTCCACAATTCAAGTTTCAATCCAATCCAACCCAAGTAT
ATAACAACCTGAAAAGACACATCGACATCAAAATGTATTTTGACGAAGAA
CAACAAAACAACAATCAACAAGACAATAACAACAACCAGCAAGACAATAA
CAACAACCAGCTACCGAAACTCCCTAAAAAACGAAAATCCGACTGGACCC
CACCTGCCACACAAAACGAAACCATCAACCATTTCTTCGAGCAACTCTAT
AACTCCGAAATCGAACCAAGACCTACCGAACGAAGACAGCACAGACATAT
CTTGACACCTTACAACTCTCTCTTAAACAACCACAACATCATCATAAAGA
AAGCGGACAAAGGAGGAGGTTTGGTCATCCTCAACAAAAAAGACTACATT
GACAAAATCAACAAAGAACACCTCAACAACACGGACACCTATCAAGAACT
AGAAGACGACCCAACCCAACGAATTACCTATGACGTACGCACAACAATCC
AATACCTCACTCTCAAACACTATATCGACAACGCCACCGCTAAATTCCTC
CAACCCCCTGACCAACCAAGAACTCCAATTTTTTACGGCCTACCTAAAAT
CCACAAAACCAACAATCCCCTTCGCCCAATAGTATCCGGATTTGACAGCC
CCACAGACAACCTATCACGCTATCTTGCACACTATCTGCAACCACTGGTG
GAATCCCTCCCTACATATTTGAAAGACACCAAACACTTCCTACAACTGTT
AGACACCTGGAACGAACCACTAGACAACATCACCATGATAACAGCTGACG
TGACATCTCTCTACACCAACATCCCACATGACGAAGGACTAAACACCACA
ACAGAGTACTACACTGATCACCGAAGACTACTACCAGACCACGCTCCAAA
CACCACTACCATCAAAATCCTACTGGACACAATCCTCACTAACAGCAACT
TTAGATTTATGGACAAGCActatttacaaaaatcaggCACGACAATGGGG
GGACGCTACGCACCACAATACGCCAACTTGTTCATGGGTAAAATAGAGAC
ACAAATTATCAATGAATTCACCAACAACGTTTTACTATGGAGACGTTTTA
TAGATGATATCTTTATAATATTCAAAGGCAACAACGAAGAACTGGCAGAA
CTTAAATCATACATGAACTTACTACACCCCAccataaaattcacttttga
tcAATCACCAACCACTATCAATTTCCTAGATGTCCAAATCACCATTTCCA
ACAACCAATTTTCCACAAGCATCTACCGGAAACCCACTGACCGTTCTCAA
CTCCTTCATTTTGAATCCAACCACCCTTTACACACAAAAGAAGGTATTGT
CTACTCCCAAGCCCTCCGCTACAACATGATTATCAGTGATTCTCAAACTC
TCACCAATGAACTCCACAACCTATCCAAAATACTCCTAGCCCGTGGCTAC
CCTCTCCGTATCATCAACGACAATATCAAGAAAGCGCTCACCAAGACCAG
ACATAACCTATTATACGACAACAAACaacatgaaaataagaacatcctaC
CGCTCATCCTCCACAATGACAGAGACAAAAACATCCAAAGCAAAATCCAA
GATGCTTGGTCAACAATTGAACAGGACGCTGATCTATCAAATATCCTTAA
AAGACCCACCACTGTGTACAAAAACAACAAGACGCTAGGGACTAAACTCA
CTTCCTCTGATACAAAAATTTGAGAGCTCCAgaataaagttttaaaagtt
ttcattacATTTTTATAAATGCCTGATTGCAAACATATCCACTTACTCAT
TTGATCACATCGGACCAGGCTCTAATCCTCCCCAGACTATCCTCCCCAGA
CTATcagtttttgtttgttgtttggtCATTCCATCTAAGGAACATCAGAA
ATAGCTtctcattttcattgtttcttaCTGCCCTTGGGTTTCACACAGAT
ATGTCATTAGATCTGCCTCACATCACGAAACATCATTATTGCTTTGCATT
CCGAAAAGCCTCTTTGTTTGCAACCAAGTTGTTACAATAATTATCAATAA
CACTTATTTATAACAACAACCACATCGCCAGGCATTTGAcctaaaaatta
tttattttgtcaACCTAATTATGTTATATACTTCATTCTTTCAATCCATT
TATAATCATCTTATCGATAATTTCCAAACCAGAAGAAAGATCAAACATCC
TTTCTACTACTAAATTTTCAAGCTTCATACTATTCTCCTACATACCTACA
AGTTTCCACTCCCTCCCAACACAAAGAAGTTGTCCCCCCTTGTCCCGCCA
TCTTTGTCTAAGTACCCCACGTGAAAATCAGTTGGTCtcggtcgggtttt
tcaccgcTATCGCCTTGGTTCGATACCAATCAGTGACCCATGTCACACTC
TTTCACCATATTTTCCGGTCTTACGCATTCTGCTGACCCCTCATCATTTT
GGCCTCTGTTGCAACCTTCTTTCATTCTCACTCGAACTCCtcctttcact
ttcgatttaaCGATTTCTCAATCCCTTTCAACACGTCCGAACCCTACCAG
GACAACTTTGACAAACTGTCAGGATTCCGAAATAGCAACACTCCAATGCA
CAATTCTGGTCTTCCACACACTCCATG Run BLAST on NCBI protein sequence of TCONS_00026815-protein >TCONS_00026815-protein ID=TCONS_00026815-protein|Name=TCONS_00026815-protein|organism=Clytia hemisphaerica|type=polypeptide|length=648bp
MYHNNNAHREYRLPSIHDLLKQSKIWKQPNLPEIKRRKLVIQEHTKNFNA
RLIHNLSDHNLTNEEHLVLCRGLNYSPGIPQFKFQSNPTQVYNNLKRHID
IKMYFDEEQQNNNQQDNNNNQQDNNNNQLPKLPKKRKSDWTPPATQNETI
NHFFEQLYNSEIEPRPTERRQHRHILTPYNSLLNNHNIIIKKADKGGGLV
ILNKKDYIDKINKEHLNNTDTYQELEDDPTQRITYDVRTTIQYLTLKHYI
DNATAKFLQPPDQPRTPIFYGLPKIHKTNNPLRPIVSGFDSPTDNLSRYL
AHYLQPLVESLPTYLKDTKHFLQLLDTWNEPLDNITMITADVTSLYTNIP
HDEGLNTTTEYYTDHRRLLPDHAPNTTTIKILLDTILTNSNFRFMDKHYL
QKSGTTMGGRYAPQYANLFMGKIETQIINEFTNNVLLWRRFIDDIFIIFK
GNNEELAELKSYMNLLHPTIKFTFDQSPTTINFLDVQITISNNQFSTSIY
RKPTDRSQLLHFESNHPLHTKEGIVYSQALRYNMIISDSQTLTNELHNLS
KILLARGYPLRIINDNIKKALTKTRHNLLYDNKQHENKNILPLILHNDRD
KNIQSKIQDAWSTIEQDADLSNILKRPTTVYKNNKTLGTKLTSSDTKI Run BLAST on NCBI transcript from alignment at sc0000589:189045..193376+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026815 ID=TCONS_00026815|Name=TCONS_00026815|organism=Clytia hemisphaerica|type=transcript|length=4332bp|location=Sequence derived from alignment at sc0000589:189045..193376+ (Clytia hemisphaerica)
CACCAATGAAACCGATCATCTCCTTCTCTCTATACTTCAGATGCGTCCAT
CCCTGTACCCATCCAATATCCACACTAAATACAAAAAAAGATCTACAGAA
GAACTCCTCGAATTATTCAACATACCAAGAATCCCACCAAGAAGAAAACC
AAAATTCAAAACACCATTTAAAAAGAACAAGACCCCAAACAAAACCAACA
CCCAGCTCCAACCACTGATAACGACCACGATAACGCCCAGAAACTCCACT
GCCACTGCATCACCTGTATACACCACTGGATCCCTGACACCCTCAACCAC
CAAAATCACACCTCCCTATAAAACAACGAATATCATCATTCCAACATTCT
ACACACCTCACTTTACTCTTCCAAATGGTACACCTATACGGTCACCTTTT
TATAACAACCGTATGAAAATCAATGAATCACTGAAACTAATAATGGAAGA
GATACAAGCAAAAGTCAATAGAACAGCAAATGATATCATCCGAAAGAACG
AACTGATCAGTATTTTTTGAGCAACAGACGTTCgtcattttcaaacattt
taattttcaacaaatttgttcaattttaaCCATATTTATATATAGAAATA
AACAATACTCCCATCATCAACCTCCACCTTGTTTCCTTTTAAATCTGTGT
CTTCTCTCGCCAACCTTTTAAATACATACATATCTATCaataaataatat
ataatatatattattattattattattttttgcatCAACCCTAACGATAA
TAGAAACATATTGATATTCTATACGCCACCCATCTCTACTTTACTCTACA
GAATGAACTATCACAACTACGCCAATTCCATCGAACACCAACAACTCATA
ACCAACAGACCCAACCGCACAACACTATACAATGATATTAATGGTAACGC
CTTTTTCCCAATTCGAAGCTGGCCATCACACATCACAAACTGCTTCAATG
AAGGTCACATATCAGACAAAGGAACATTTAAAATCCTAacatttttttat
ggaaatggAGGTTCACCATCTCTCATCATTCCCTACTTACACAGTACGTA
CCAccaaaacaagaagaaaaaacgATTTTACCAAATCAAATGGATTTGCA
ACAACTTGGAAGCAAACTCTAACAGATGGTATTATTATGACATACAGCAA
ATGAAATATCTAAAATTAAACGGACAACCTACaagataaaatattaaaaa
caatgaTCGATTCATCCCAAGTTCCATATTTGTcaaatttatcaatattt
tattacacaAGGCTTTGTCAATTTTATTCTAATAAAGTCAATAAATTCTA
TTTCTTACAAACACGAAACTTAATTACAATATTTCTTcggtttttatatt
tttacattcaCCTAACACACCACAAATCCACACCTGCGTAGACTCACATC
TCGGTCTTACACTCTCCTTTAATTTCAAACAAGCCTTCTATTTTAATTCA
ACATATAACACTTCTCATCCACAGCTACAAGATGTACCACAACAACAACG
CACATAGAGAATATCGTCTACCATCCATCCACGACCTcctcaaacaatca
aaaatatggAAACAACCAAACCTCCCAGAAATCAAACGAAGAAAACTAGT
TATCCAAGAGCACACCAAAAACTTTAATGCCAGATTAATCCACAACCTCT
CTGACCACAACCTTACCAATGAAGAACACCTCGTCCTTTGCAGAGGCCTA
AATTACTCACCAGGCATTCCACAATTCAAGTTTCAATCCAATCCAACCCA
AGTATATAACAACCTGAAAAGACACATCGACATCAAAATGTATTTTGACG
AAGAACAACAAAACAACAATCAACAAGACAATAACAACAACCAGCAAGAC
AATAACAACAACCAGCTACCGAAACTCCCTAAAAAACGAAAATCCGACTG
GACCCCACCTGCCACACAAAACGAAACCATCAACCATTTCTTCGAGCAAC
TCTATAACTCCGAAATCGAACCAAGACCTACCGAACGAAGACAGCACAGA
CATATCTTGACACCTTACAACTCTCTCTTAAACAACCACAACATCATCAT
AAAGAAAGCGGACAAAGGAGGAGGTTTGGTCATCCTCAACAAAAAAGACT
ACATTGACAAAATCAACAAAGAACACCTCAACAACACGGACACCTATCAA
GAACTAGAAGACGACCCAACCCAACGAATTACCTATGACGTACGCACAAC
AATCCAATACCTCACTCTCAAACACTATATCGACAACGCCACCGCTAAAT
TCCTCCAACCCCCTGACCAACCAAGAACTCCAATTTTTTACGGCCTACCT
AAAATCCACAAAACCAACAATCCCCTTCGCCCAATAGTATCCGGATTTGA
CAGCCCCACAGACAACCTATCACGCTATCTTGCACACTATCTGCAACCAC
TGGTGGAATCCCTCCCTACATATTTGAAAGACACCAAACACTTCCTACAA
CTGTTAGACACCTGGAACGAACCACTAGACAACATCACCATGATAACAGC
TGACGTGACATCTCTCTACACCAACATCCCACATGACGAAGGACTAAACA
CCACAACAGAGTACTACACTGATCACCGAAGACTACTACCAGACCACGCT
CCAAACACCACTACCATCAAAATCCTACTGGACACAATCCTCACTAACAG
CAACTTTAGATTTATGGACAAGCActatttacaaaaatcaggCACGACAA
TGGGGGGACGCTACGCACCACAATACGCCAACTTGTTCATGGGTAAAATA
GAGACACAAATTATCAATGAATTCACCAACAACGTTTTACTATGGAGACG
TTTTATAGATGATATCTTTATAATATTCAAAGGCAACAACGAAGAACTGG
CAGAACTTAAATCATACATGAACTTACTACACCCCAccataaaattcact
tttgatcAATCACCAACCACTATCAATTTCCTAGATGTCCAAATCACCAT
TTCCAACAACCAATTTTCCACAAGCATCTACCGGAAACCCACTGACCGTT
CTCAACTCCTTCATTTTGAATCCAACCACCCTTTACACACAAAAGAAGGT
ATTGTCTACTCCCAAGCCCTCCGCTACAACATGATTATCAGTGATTCTCA
AACTCTCACCAATGAACTCCACAACCTATCCAAAATACTCCTAGCCCGTG
GCTACCCTCTCCGTATCATCAACGACAATATCAAGAAAGCGCTCACCAAG
ACCAGACATAACCTATTATACGACAACAAACaacatgaaaataagaacat
cctaCCGCTCATCCTCCACAATGACAGAGACAAAAACATCCAAAGCAAAA
TCCAAGATGCTTGGTCAACAATTGAACAGGACGCTGATCTATCAAATATC
CTTAAAAGACCCACCACTGTGTACAAAAACAACAAGACGCTAGGGACTAA
ACTCACTTCCTCTGATACAAAAATTTGAGAGCTCCAgaataaagttttaa
aagttttcattacATTTTTATAAATGCCTGATTGCAAACATATCCACTTA
CTCATTTGATCACATCGGACCAGGCTCTAATCCTCCCCAGACTATCCTCC
CCAGACTATcagtttttgtttgttgtttggtCATTCCATCTAAGGAACAT
CAGAAATAGCTtctcattttcattgtttcttaCTGCCCTTGGGTTTCACA
CAGATATGTCATTAGATCTGCCTCACATCACGAAACATCATTATTGCTTT
GCATTCCGAAAAGCCTCTTTGTTTGCAACCAAGTTGTTACAATAATTATC
AATAACACTTATTTATAACAACAACCACATCGCCAGGCATTTGAcctaaa
aattatttattttgtcaACCTAATTATGTTATATACTTCATTCTTTCAAT
CCATTTATAATCATCTTATCGATAATTTCCAAACCAGAAGAAAGATCAAA
CATCCTTTCTACTACTAAATTTTCAAGCTTCATACTATTCTCCTACATAC
CTACAAGTTTCCACTCCCTCCCAACACAAAGAAGTTGTCCCCCCTTGTCC
CGCCATCTTTGTCTAAGTACCCCACGTGAAAATCAGTTGGTCtcggtcgg
gtttttcaccgcTATCGCCTTGGTTCGATACCAATCAGTGACCCATGTCA
CACTCTTTCACCATATTTTCCGGTCTTACGCATTCTGCTGACCCCTCATC
ATTTTGGCCTCTGTTGCAACCTTCTTTCATTCTCACTCGAACTCCtcctt
tcactttcgatttaaCGATTTCTCAATCCCTTTCAACACGTCCGAACCCT
ACCAGGACAACTTTGACAAACTGTCAGGATTCCGAAATAGCAACACTCCA
ATGCACAATTCTGGTCTTCCACACACTCCATG Coding sequence (CDS) from alignment at sc0000589:189045..193376+ >TCONS_00026815 ID=TCONS_00026815|Name=TCONS_00026815|organism=Clytia hemisphaerica|type=CDS|length=1947bp|location=Sequence derived from alignment at sc0000589:189045..193376+ (Clytia hemisphaerica)
ATGTACCACAACAACAACGCACATAGAGAATATCGTCTACCATCCATCCA
CGACCTcctcaaacaatcaaaaatatggAAACAACCAAACCTCCCAGAAA
TCAAACGAAGAAAACTAGTTATCCAAGAGCACACCAAAAACTTTAATGCC
AGATTAATCCACAACCTCTCTGACCACAACCTTACCAATGAAGAACACCT
CGTCCTTTGCAGAGGCCTAAATTACTCACCAGGCATTCCACAATTCAAGT
TTCAATCCAATCCAACCCAAGTATATAACAACCTGAAAAGACACATCGAC
ATCAAAATGTATTTTGACGAAGAACAACAAAACAACAATCAACAAGACAA
TAACAACAACCAGCAAGACAATAACAACAACCAGCTACCGAAACTCCCTA
AAAAACGAAAATCCGACTGGACCCCACCTGCCACACAAAACGAAACCATC
AACCATTTCTTCGAGCAACTCTATAACTCCGAAATCGAACCAAGACCTAC
CGAACGAAGACAGCACAGACATATCTTGACACCTTACAACTCTCTCTTAA
ACAACCACAACATCATCATAAAGAAAGCGGACAAAGGAGGAGGTTTGGTC
ATCCTCAACAAAAAAGACTACATTGACAAAATCAACAAAGAACACCTCAA
CAACACGGACACCTATCAAGAACTAGAAGACGACCCAACCCAACGAATTA
CCTATGACGTACGCACAACAATCCAATACCTCACTCTCAAACACTATATC
GACAACGCCACCGCTAAATTCCTCCAACCCCCTGACCAACCAAGAACTCC
AATTTTTTACGGCCTACCTAAAATCCACAAAACCAACAATCCCCTTCGCC
CAATAGTATCCGGATTTGACAGCCCCACAGACAACCTATCACGCTATCTT
GCACACTATCTGCAACCACTGGTGGAATCCCTCCCTACATATTTGAAAGA
CACCAAACACTTCCTACAACTGTTAGACACCTGGAACGAACCACTAGACA
ACATCACCATGATAACAGCTGACGTGACATCTCTCTACACCAACATCCCA
CATGACGAAGGACTAAACACCACAACAGAGTACTACACTGATCACCGAAG
ACTACTACCAGACCACGCTCCAAACACCACTACCATCAAAATCCTACTGG
ACACAATCCTCACTAACAGCAACTTTAGATTTATGGACAAGCActattta
caaaaatcaggCACGACAATGGGGGGACGCTACGCACCACAATACGCCAA
CTTGTTCATGGGTAAAATAGAGACACAAATTATCAATGAATTCACCAACA
ACGTTTTACTATGGAGACGTTTTATAGATGATATCTTTATAATATTCAAA
GGCAACAACGAAGAACTGGCAGAACTTAAATCATACATGAACTTACTACA
CCCCAccataaaattcacttttgatcAATCACCAACCACTATCAATTTCC
TAGATGTCCAAATCACCATTTCCAACAACCAATTTTCCACAAGCATCTAC
CGGAAACCCACTGACCGTTCTCAACTCCTTCATTTTGAATCCAACCACCC
TTTACACACAAAAGAAGGTATTGTCTACTCCCAAGCCCTCCGCTACAACA
TGATTATCAGTGATTCTCAAACTCTCACCAATGAACTCCACAACCTATCC
AAAATACTCCTAGCCCGTGGCTACCCTCTCCGTATCATCAACGACAATAT
CAAGAAAGCGCTCACCAAGACCAGACATAACCTATTATACGACAACAAAC
aacatgaaaataagaacatcctaCCGCTCATCCTCCACAATGACAGAGAC
AAAAACATCCAAAGCAAAATCCAAGATGCTTGGTCAACAATTGAACAGGA
CGCTGATCTATCAAATATCCTTAAAAGACCCACCACTGTGTACAAAAACA
ACAAGACGCTAGGGACTAAACTCACTTCCTCTGATACAAAAATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026815-exon-sc0000589-1491911889:189045..189421 | TCONS_00026815-exon-sc0000589-1491911889:189045..189421 | Clytia hemisphaerica | exon |
| TCONS_00026815-exon-sc0000589-1510915933:189045..189421 | TCONS_00026815-exon-sc0000589-1510915933:189045..189421 | Clytia hemisphaerica | exon |
| TCONS_00026815-exon-sc0000589-1575043694:189045..189421 | TCONS_00026815-exon-sc0000589-1575043694:189045..189421 | Clytia hemisphaerica | exon |
| TCONS_00026815-exon-sc0000589-1491911889:189846..190087 | TCONS_00026815-exon-sc0000589-1491911889:189846..190087 | Clytia hemisphaerica | exon |
| TCONS_00026815-exon-sc0000589-1510915933:189846..190087 | TCONS_00026815-exon-sc0000589-1510915933:189846..190087 | Clytia hemisphaerica | exon |
| TCONS_00026815-exon-sc0000589-1575043694:189846..190087 | TCONS_00026815-exon-sc0000589-1575043694:189846..190087 | Clytia hemisphaerica | exon |
| TCONS_00026815-exon-sc0000589-1491911889:190519..193376 | TCONS_00026815-exon-sc0000589-1491911889:190519..193376 | Clytia hemisphaerica | exon |
| TCONS_00026815-exon-sc0000589-1510915933:190519..193376 | TCONS_00026815-exon-sc0000589-1510915933:190519..193376 | Clytia hemisphaerica | exon |
| TCONS_00026815-exon-sc0000589-1575043694:190519..193376 | TCONS_00026815-exon-sc0000589-1575043694:190519..193376 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000589 | supercontig | sc0000589:189045..193376 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
|
