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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026813 ID=TCONS_00026813|Name=TCONS_00026813|organism=Clytia hemisphaerica|type=transcript|length=4329bp
TGCAAAATACATGAGATAATATTTCATTCAATACGAGATGCGTCCATCCC
TGTACCCATCCAATATCCACACTAAATACAAAAAAAGATCTACAGAAGAA
CTCCTCGAATTATTCAACATACCAAGAATCCCACCAAGAAGAAAACCAAA
ATTCAAAACACCATTTAAAAAGAACAAGACCCCAAACAAAACCAACACCC
AGCTCCAACCACTGATAACGACCACGATAACGCCCAGAAACTCCACTGCC
ACTGCATCACCTGTATACACCACTGGATCCCTGACACCCTCAACCACCAA
AATCACACCTCCCTATAAAACAACGAATATCATCATTCCAACATTCTACA
CACCTCACTTTACTCTTCCAAATGGTACACCTATACGGTCACCTTTTTAT
AACAACCGTATGAAAATCAATGAATCACTGAAACTAATAATGGAAGAGAT
ACAAGCAAAAGTCAATAGAACAGCAAATGATATCATCCGAAAGAACGAAC
TGATCAGTATTTTTTGAGCAACAGACGTTCgtcattttcaaacattttaa
ttttcaacaaatttgttcaattttaaCCATATTTATATATAGAAATAAAC
AATACTCCCATCATCAACCTCCACCTTGTTTCCTTTTAAATCTGTGTCTT
CTCTCGCCAACCTTTTAAATACATACATATCTATCaataaataatatata
atatatattattattattattattttttgcatCAACCCTAACGATAATAG
AAACATATTGATATTCTATACGCCACCCATCTCTACTTTACTCTACAGAA
TGAACTATCACAACTACGCCAATTCCATCGAACACCAACAACTCATAACC
AACAGACCCAACCGCACAACACTATACAATGATATTAATGGTAACGCCTT
TTTCCCAATTCGAAGCTGGCCATCACACATCACAAACTGCTTCAATGAAG
GTCACATATCAGACAAAGGAACATTTAAAATCCTAacatttttttatgga
aatggAGGTTCACCATCTCTCATCATTCCCTACTTACACAGTACGTACCA
ccaaaacaagaagaaaaaacgATTTTACCAAATCAAATGGATTTGCAACA
ACTTGGAAGCAAACTCTAACAGATGGTATTATTATGACATACAGCAAATG
AAATATCTAAAATTAAACGGACAACCTACaagataaaatattaaaaacaa
tgaTCGATTCATCCCAAGTTCCATATTTGTcaaatttatcaatattttat
tacacaAGGCTTTGTCAATTTTATTCTAATAAAGTCAATAAATTCTATTT
CTTACAAACACGAAACTTAATTACAATATTTCTTcggtttttatattttt
acattcaCCTAACACACCACAAATCCACACCTGCGTAGACTCACATCTCG
GTCTTACACTCTCCTTTAATTTCAAACAAGCCTTCTATTTTAATTCAACA
TATAACACTTCTCATCCACAGCTACAAGATGTACCACAACAACAACGCAC
ATAGAGAATATCGTCTACCATCCATCCACGACCTcctcaaacaatcaaaa
atatggAAACAACCAAACCTCCCAGAAATCAAACGAAGAAAACTAGTTAT
CCAAGAGCACACCAAAAACTTTAATGCCAGATTAATCCACAACCTCTCTG
ACCACAACCTTACCAATGAAGAACACCTCGTCCTTTGCAGAGGCCTAAAT
TACTCACCAGGCATTCCACAATTCAAGTTTCAATCCAATCCAACCCAAGT
ATATAACAACCTGAAAAGACACATCGACATCAAAATGTATTTTGACGAAG
AACAACAAAACAACAATCAACAAGACAATAACAACAACCAGCAAGACAAT
AACAACAACCAGCTACCGAAACTCCCTAAAAAACGAAAATCCGACTGGAC
CCCACCTGCCACACAAAACGAAACCATCAACCATTTCTTCGAGCAACTCT
ATAACTCCGAAATCGAACCAAGACCTACCGAACGAAGACAGCACAGACAT
ATCTTGACACCTTACAACTCTCTCTTAAACAACCACAACATCATCATAAA
GAAAGCGGACAAAGGAGGAGGTTTGGTCATCCTCAACAAAAAAGACTACA
TTGACAAAATCAACAAAGAACACCTCAACAACACGGACACCTATCAAGAA
CTAGAAGACGACCCAACCCAACGAATTACCTATGACGTACGCACAACAAT
CCAATACCTCACTCTCAAACACTATATCGACAACGCCACCGCTAAATTCC
TCCAACCCCCTGACCAACCAAGAACTCCAATTTTTTACGGCCTACCTAAA
ATCCACAAAACCAACAATCCCCTTCGCCCAATAGTATCCGGATTTGACAG
CCCCACAGACAACCTATCACGCTATCTTGCACACTATCTGCAACCACTGG
TGGAATCCCTCCCTACATATTTGAAAGACACCAAACACTTCCTACAACTG
TTAGACACCTGGAACGAACCACTAGACAACATCACCATGATAACAGCTGA
CGTGACATCTCTCTACACCAACATCCCACATGACGAAGGACTAAACACCA
CAACAGAGTACTACACTGATCACCGAAGACTACTACCAGACCACGCTCCA
AACACCACTACCATCAAAATCCTACTGGACACAATCCTCACTAACAGCAA
CTTTAGATTTATGGACAAGCActatttacaaaaatcaggCACGACAATGG
GGGGACGCTACGCACCACAATACGCCAACTTGTTCATGGGTAAAATAGAG
ACACAAATTATCAATGAATTCACCAACAACGTTTTACTATGGAGACGTTT
TATAGATGATATCTTTATAATATTCAAAGGCAACAACGAAGAACTGGCAG
AACTTAAATCATACATGAACTTACTACACCCCAccataaaattcactttt
gatcAATCACCAACCACTATCAATTTCCTAGATGTCCAAATCACCATTTC
CAACAACCAATTTTCCACAAGCATCTACCGGAAACCCACTGACCGTTCTC
AACTCCTTCATTTTGAATCCAACCACCCTTTACACACAAAAGAAGGTATT
GTCTACTCCCAAGCCCTCCGCTACAACATGATTATCAGTGATTCTCAAAC
TCTCACCAATGAACTCCACAACCTATCCAAAATACTCCTAGCCCGTGGCT
ACCCTCTCCGTATCATCAACGACAATATCAAGAAAGCGCTCACCAAGACC
AGACATAACCTATTATACGACAACAAACaacatgaaaataagaacatcct
aCCGCTCATCCTCCACAATGACAGAGACAAAAACATCCAAAGCAAAATCC
AAGATGCTTGGTCAACAATTGAACAGGACGCTGATCTATCAAATATCCTT
AAAAGACCCACCACTGTGTACAAAAACAACAAGACGCTAGGGACTAAACT
CACTTCCTCTGATACAAAAATTTGAGAGCTCCAgaataaagttttaaaag
ttttcattacATTTTTATAAATGCCTGATTGCAAACATATCCACTTACTC
ATTTGATCACATCGGACCAGGCTCTAATCCTCCCCAGACTATCCTCCCCA
GACTATcagtttttgtttgttgtttggtCATTCCATCTAAGGAACATCAG
AAATAGCTtctcattttcattgtttcttaCTGCCCTTGGGTTTCACACAG
ATATGTCATTAGATCTGCCTCACATCACGAAACATCATTATTGCTTTGCA
TTCCGAAAAGCCTCTTTGTTTGCAACCAAGTTGTTACAATAATTATCAAT
AACACTTATTTATAACAACAACCACATCGCCAGGCATTTGAcctaaaaat
tatttattttgtcaACCTAATTATGTTATATACTTCATTCTTTCAATCCA
TTTATAATCATCTTATCGATAATTTCCAAACCAGAAGAAAGATCAAACAT
CCTTTCTACTACTAAATTTTCAAGCTTCATACTATTCTCCTACATACCTA
CAAGTTTCCACTCCCTCCCAACACAAAGAAGTTGTCCCCCCTTGTCCCGC
CATCTTTGTCTAAGTACCCCACGTGAAAATCAGTTGGTCtcggtcgggtt
tttcaccgcTATCGCCTTGGTTCGATACCAATCAGTGACCCATGTCACAC
TCTTTCACCATATTTTCCGGTCTTACGCATTCTGCTGACCCCTCATCATT
TTGGCCTCTGTTGCAACCTTCTTTCATTCTCACTCGAACTCCtcctttca
ctttcgatttaaCGATTTCTCAATCCCTTTCAACACGTCCGAACCCTACC
AGGACAACTTTGACAAACTGTCAGGATTCCGAAATAGCAACACTCCAATG
CACAATTCTGGTCTTCCACACACTCCATG Run BLAST on NCBI transcript from alignment at sc0000589:188748..193376+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026813 ID=TCONS_00026813|Name=TCONS_00026813|organism=Clytia hemisphaerica|type=transcript|length=4629bp|location=Sequence derived from alignment at sc0000589:188748..193376+ (Clytia hemisphaerica)
TGCAAAATACATGAGATAATATTTCATTCAATACGAGGTATGACCAACTT
TTCCTTATTTCTTTGGAAAAACACACATTTAAATCTGAAACGTATTTCTA
CTATTTTCATAATTTTCTTTCCAAAATATGCTAATTAGATTTCTAAAGCG
CAATGACTGAAAGCAACAAAAATACCTTCCGCCATTCTGAAACAATTTTT
AAACAACACCATAAAAAATGAAACAAAATGACATCATCCCAATCGAAAAA
TATGACTGCAGCATTAGACAAGACCGCTATCATACAAATTGTTTAACCAC
CAATGAAACCGATCATCTCCTTCTCTCTATACTTCAGATGCGTCCATCCC
TGTACCCATCCAATATCCACACTAAATACAAAAAAAGATCTACAGAAGAA
CTCCTCGAATTATTCAACATACCAAGAATCCCACCAAGAAGAAAACCAAA
ATTCAAAACACCATTTAAAAAGAACAAGACCCCAAACAAAACCAACACCC
AGCTCCAACCACTGATAACGACCACGATAACGCCCAGAAACTCCACTGCC
ACTGCATCACCTGTATACACCACTGGATCCCTGACACCCTCAACCACCAA
AATCACACCTCCCTATAAAACAACGAATATCATCATTCCAACATTCTACA
CACCTCACTTTACTCTTCCAAATGGTACACCTATACGGTCACCTTTTTAT
AACAACCGTATGAAAATCAATGAATCACTGAAACTAATAATGGAAGAGAT
ACAAGCAAAAGTCAATAGAACAGCAAATGATATCATCCGAAAGAACGAAC
TGATCAGTATTTTTTGAGCAACAGACGTTCgtcattttcaaacattttaa
ttttcaacaaatttgttcaattttaaCCATATTTATATATAGAAATAAAC
AATACTCCCATCATCAACCTCCACCTTGTTTCCTTTTAAATCTGTGTCTT
CTCTCGCCAACCTTTTAAATACATACATATCTATCaataaataatatata
atatatattattattattattattttttgcatCAACCCTAACGATAATAG
AAACATATTGATATTCTATACGCCACCCATCTCTACTTTACTCTACAGAA
TGAACTATCACAACTACGCCAATTCCATCGAACACCAACAACTCATAACC
AACAGACCCAACCGCACAACACTATACAATGATATTAATGGTAACGCCTT
TTTCCCAATTCGAAGCTGGCCATCACACATCACAAACTGCTTCAATGAAG
GTCACATATCAGACAAAGGAACATTTAAAATCCTAacatttttttatgga
aatggAGGTTCACCATCTCTCATCATTCCCTACTTACACAGTACGTACCA
ccaaaacaagaagaaaaaacgATTTTACCAAATCAAATGGATTTGCAACA
ACTTGGAAGCAAACTCTAACAGATGGTATTATTATGACATACAGCAAATG
AAATATCTAAAATTAAACGGACAACCTACaagataaaatattaaaaacaa
tgaTCGATTCATCCCAAGTTCCATATTTGTcaaatttatcaatattttat
tacacaAGGCTTTGTCAATTTTATTCTAATAAAGTCAATAAATTCTATTT
CTTACAAACACGAAACTTAATTACAATATTTCTTcggtttttatattttt
acattcaCCTAACACACCACAAATCCACACCTGCGTAGACTCACATCTCG
GTCTTACACTCTCCTTTAATTTCAAACAAGCCTTCTATTTTAATTCAACA
TATAACACTTCTCATCCACAGCTACAAGATGTACCACAACAACAACGCAC
ATAGAGAATATCGTCTACCATCCATCCACGACCTcctcaaacaatcaaaa
atatggAAACAACCAAACCTCCCAGAAATCAAACGAAGAAAACTAGTTAT
CCAAGAGCACACCAAAAACTTTAATGCCAGATTAATCCACAACCTCTCTG
ACCACAACCTTACCAATGAAGAACACCTCGTCCTTTGCAGAGGCCTAAAT
TACTCACCAGGCATTCCACAATTCAAGTTTCAATCCAATCCAACCCAAGT
ATATAACAACCTGAAAAGACACATCGACATCAAAATGTATTTTGACGAAG
AACAACAAAACAACAATCAACAAGACAATAACAACAACCAGCAAGACAAT
AACAACAACCAGCTACCGAAACTCCCTAAAAAACGAAAATCCGACTGGAC
CCCACCTGCCACACAAAACGAAACCATCAACCATTTCTTCGAGCAACTCT
ATAACTCCGAAATCGAACCAAGACCTACCGAACGAAGACAGCACAGACAT
ATCTTGACACCTTACAACTCTCTCTTAAACAACCACAACATCATCATAAA
GAAAGCGGACAAAGGAGGAGGTTTGGTCATCCTCAACAAAAAAGACTACA
TTGACAAAATCAACAAAGAACACCTCAACAACACGGACACCTATCAAGAA
CTAGAAGACGACCCAACCCAACGAATTACCTATGACGTACGCACAACAAT
CCAATACCTCACTCTCAAACACTATATCGACAACGCCACCGCTAAATTCC
TCCAACCCCCTGACCAACCAAGAACTCCAATTTTTTACGGCCTACCTAAA
ATCCACAAAACCAACAATCCCCTTCGCCCAATAGTATCCGGATTTGACAG
CCCCACAGACAACCTATCACGCTATCTTGCACACTATCTGCAACCACTGG
TGGAATCCCTCCCTACATATTTGAAAGACACCAAACACTTCCTACAACTG
TTAGACACCTGGAACGAACCACTAGACAACATCACCATGATAACAGCTGA
CGTGACATCTCTCTACACCAACATCCCACATGACGAAGGACTAAACACCA
CAACAGAGTACTACACTGATCACCGAAGACTACTACCAGACCACGCTCCA
AACACCACTACCATCAAAATCCTACTGGACACAATCCTCACTAACAGCAA
CTTTAGATTTATGGACAAGCActatttacaaaaatcaggCACGACAATGG
GGGGACGCTACGCACCACAATACGCCAACTTGTTCATGGGTAAAATAGAG
ACACAAATTATCAATGAATTCACCAACAACGTTTTACTATGGAGACGTTT
TATAGATGATATCTTTATAATATTCAAAGGCAACAACGAAGAACTGGCAG
AACTTAAATCATACATGAACTTACTACACCCCAccataaaattcactttt
gatcAATCACCAACCACTATCAATTTCCTAGATGTCCAAATCACCATTTC
CAACAACCAATTTTCCACAAGCATCTACCGGAAACCCACTGACCGTTCTC
AACTCCTTCATTTTGAATCCAACCACCCTTTACACACAAAAGAAGGTATT
GTCTACTCCCAAGCCCTCCGCTACAACATGATTATCAGTGATTCTCAAAC
TCTCACCAATGAACTCCACAACCTATCCAAAATACTCCTAGCCCGTGGCT
ACCCTCTCCGTATCATCAACGACAATATCAAGAAAGCGCTCACCAAGACC
AGACATAACCTATTATACGACAACAAACaacatgaaaataagaacatcct
aCCGCTCATCCTCCACAATGACAGAGACAAAAACATCCAAAGCAAAATCC
AAGATGCTTGGTCAACAATTGAACAGGACGCTGATCTATCAAATATCCTT
AAAAGACCCACCACTGTGTACAAAAACAACAAGACGCTAGGGACTAAACT
CACTTCCTCTGATACAAAAATTTGAGAGCTCCAgaataaagttttaaaag
ttttcattacATTTTTATAAATGCCTGATTGCAAACATATCCACTTACTC
ATTTGATCACATCGGACCAGGCTCTAATCCTCCCCAGACTATCCTCCCCA
GACTATcagtttttgtttgttgtttggtCATTCCATCTAAGGAACATCAG
AAATAGCTtctcattttcattgtttcttaCTGCCCTTGGGTTTCACACAG
ATATGTCATTAGATCTGCCTCACATCACGAAACATCATTATTGCTTTGCA
TTCCGAAAAGCCTCTTTGTTTGCAACCAAGTTGTTACAATAATTATCAAT
AACACTTATTTATAACAACAACCACATCGCCAGGCATTTGAcctaaaaat
tatttattttgtcaACCTAATTATGTTATATACTTCATTCTTTCAATCCA
TTTATAATCATCTTATCGATAATTTCCAAACCAGAAGAAAGATCAAACAT
CCTTTCTACTACTAAATTTTCAAGCTTCATACTATTCTCCTACATACCTA
CAAGTTTCCACTCCCTCCCAACACAAAGAAGTTGTCCCCCCTTGTCCCGC
CATCTTTGTCTAAGTACCCCACGTGAAAATCAGTTGGTCtcggtcgggtt
tttcaccgcTATCGCCTTGGTTCGATACCAATCAGTGACCCATGTCACAC
TCTTTCACCATATTTTCCGGTCTTACGCATTCTGCTGACCCCTCATCATT
TTGGCCTCTGTTGCAACCTTCTTTCATTCTCACTCGAACTCCtcctttca
ctttcgatttaaCGATTTCTCAATCCCTTTCAACACGTCCGAACCCTACC
AGGACAACTTTGACAAACTGTCAGGATTCCGAAATAGCAACACTCCAATG
CACAATTCTGGTCTTCCACACACTCCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026813-exon-sc0000589-1491911889:188748..188784 | TCONS_00026813-exon-sc0000589-1491911889:188748..188784 | Clytia hemisphaerica | exon |
| TCONS_00026813-exon-sc0000589-1510915933:188748..188784 | TCONS_00026813-exon-sc0000589-1510915933:188748..188784 | Clytia hemisphaerica | exon |
| TCONS_00026813-exon-sc0000589-1575043694:188748..188784 | TCONS_00026813-exon-sc0000589-1575043694:188748..188784 | Clytia hemisphaerica | exon |
| TCONS_00026813-exon-sc0000589-1491911889:189085..193376 | TCONS_00026813-exon-sc0000589-1491911889:189085..193376 | Clytia hemisphaerica | exon |
| TCONS_00026813-exon-sc0000589-1510915933:189085..193376 | TCONS_00026813-exon-sc0000589-1510915933:189085..193376 | Clytia hemisphaerica | exon |
| TCONS_00026813-exon-sc0000589-1575043694:189085..193376 | TCONS_00026813-exon-sc0000589-1575043694:189085..193376 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000589 | supercontig | sc0000589:188748..193376 + |
Blast
The following BLAST results are available for this feature:
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