TCONS_00026802 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026802
Unique NameTCONS_00026802
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1605

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026802 ID=TCONS_00026802|Name=TCONS_00026802|organism=Clytia hemisphaerica|type=transcript|length=1605bp
CATTATGAAGCCCTGTTCAAATTGATACGTTAATAATGCAATATGGTTTA
ACCAAATTTATCCGACGATCAAGCCAAAAATATTAGGTAAAGTGTATGCC
CAACGTAGAAAGAAACTTGgcaatatcaaaatcaaacaaCTGaaaaaatt
taaaacactcATTGATGAAAGCTCTAACGTCGATATTGCTTTAAAAGCAC
TTGGAGAAGATTTATCAAATCGATTCAAGGTTACTTTAACTTTAGAAGTG
GATAAACTTGATTTAACTAAAGATGCAAACCAGAAGTCGACTGACCACCA
AATAAGTGAGGATAACACAAGTGAGACTGACGCAGAAGATTCAATAGACA
AAGAAAACGAAGAAACAAAGACGACTGAGCACCAAATAAGTGACGATAAT
GCAAGTGAAATATACGCAGAAGATTCAAGTGAAGAAATAGAAAAGACAGA
GaCTGGGACTCGAAAAAGATTCAAATTCACATTGAAGGAAGAAACGCCAA
TAGACACCAAAGTCAGGCGGATAGAACGACTAAAAAGAATAAATGGACAG
CAAGCGAATACAATTGAGCAACTGAAAGAGAAAAATGCATCTCTAACCCT
TCGAAACGCTGCCTTCACCCGTTTGAAGATAATAGAACAGCTAGGAGAAA
GGCGCTCTACTTTAATGGTAGACGCCTCACTTTTTTCTAATACTTTCCAT
GCTGGTGATGCCATATTACAACAAGAAGATTCCGATTTGCTCGACCCCTC
CACTTTTGAAGGGTTGGAAGGAAAGATGTTGATTCCTGGTCTGTTTTGCT
TTGCCAAAAAAGTCACTCTCTCCAACGGAGAATCTGTTGTGCTGAAAACA
CATAAGCCAGAGAGTTTCGGTCTTCAGAGCTTAGCCGTCCTAAGTCACGA
ACATCGTCTCCTAAAGTTTGTTGGAAGCCACGCAAATTTGGTTTCGACAG
TTGGTTTGGTCCCCACAAACGGGATATTTGCTCATGTCATGAAATTTGAG
TATGGCATGAGTCTCTTTGAAATGTCACAAAAATCTATTTCCATAATTTC
TATCTCAAATTTCAAATCCATCATCGAGGGAGTCGCTGATGGactaaatt
ttttgtttgataaagGGGTCATCCATAACCATCTTATTACTGACAACGTT
ATTGTTAGAGATGGTTCCCCTAGAATTGTTGGGTTTACGTTTTCATGCAG
GGTGTATTCCACCAAAAACAATGTACAAGAAGTCTTAAAAAAGTTCCAGG
GTTCAAATCATTTGGCTCCCGAACTATACAACGGGTCTTGTGCTAGTTAT
TCGACTGATGTTTATGCGTTTGGTGTGCTAGTACAAAGCATCTTAAAAAT
GAGATTCGGCTTTACAATGAACACAACCTTCAAGTCAAGAGTTGACTGTT
ATGCTGACAGCTGTCTGTATACGGCAGACCTAAGGCCACCGCACAAGTTT
CTGGCTTCGAAAACAAAACGAATGCTATATTACAAAATTTAATATTAGAT
ATGTATTTTCCTGATTCCTTCTTAAGGCTATAAGTAGTAATTCATCATTC
CTgcataactcgaaaattttcttGAGAAAATGTTGCTACCTTTTTTAGAT
CCCTG
Run BLAST on NCBI

transcript from alignment at sc0000587:190351..194170-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026802 ID=TCONS_00026802|Name=TCONS_00026802|organism=Clytia hemisphaerica|type=transcript|length=3820bp|location=Sequence derived from alignment at sc0000587:190351..194170- (Clytia hemisphaerica)
CATTATGAAGCCCTGTTCAAATTGATACGTTAATAATGGTTAGTCCCCTG
TCTTAATTTTTTGAATAAGACTTAATCTTTTTAAATTATTCTTTGTTCAA
TCTTTGATTTGTATGACAAAGAGCCCAAGTTTGGGGTTCTAAATACGAAG
TTATGCATTACGTACGATTCTATTGACAGTAAAACTAAAATGGACGTACA
AGAAATTAAATCAGTACTGATGGTGTTATTCAATGTTGGGTAAAATGCAA
AATATCAAGCAAAATTTGATGTTTAAATTTGTGAAAGGTTTGGTTATTAT
CATTTGGTAGTGAAAAGTATCTACTGTAAAATTGTCTATCATTTGCACTC
CTGTTCAAAAAATAGGAGATAAAAAAATTAGCAGGGAAACAAACTCAAAC
TGTTCTAGTTCACTTTCATATTCTTTTACTGTCCAAGGATGTGTATAATA
CAATTCAACATGTTCCGGAAGAGTGTTATTTATATACAATCACCACTTAT
ACAAAACAAAACACCGACGGAGAATGTTATTCAAAAAATGTAAAAACTTG
TTTACCTCAACACAACAAAATGATTTGGAACTATTGCCTATTGAAAGAAG
GGTTCATAATTCCTTTGCCATTCTTTTAAAAAGTAATTTCCCGTTCCCTT
TAAAAAAGCTAAGCTACACCTTGTGATGTACCTGATTTACTTTAAAAGCC
TACTCAGAAGGTATTCTTTTCCAATTTAGCAATATGGTTTAACCAAATTT
ATCCGACGATCAAGCCAAAAATATTAGGTAAAGTGTATGCCCAACGTAGA
AAGAAACTTGGCAATATCAAAATCAAACAACTGGTAAGTTTTAAACGTGC
AAATCATTTTCGGAATTTTTAGAAAGTTGGGAAAATGTTAATTGTGAGTG
CTTCGTCAGTGTTTATTAATTTGCAATACAACATAATATCTCTTAAATAA
TAATGAAGGAATGAAAATTTATCTGGGCCATCGTTTTCCAATGACTTACT
TACCTGTTTTGTTAAAAAGTCTATTCGCTTTCTTTAATTAGGTCTTGTTT
TTTTTTTAATTAGAAAAAATTTAAAACACTCATTGATGAAAGCTCTAACG
TCGATATTGCTTTAAAAGCACTTGGAGAAGATTTATCAAATCGATTCAAG
GTCAATTGTTATTCTTCAAGTTGCCTAAGTTTGTCAGAATTTGCTTAAAA
AGTTCATAATTTTTATTTCTGCAACAAACAAAAAAAACATGACGATTTCA
ACAAATTAAAATCTCGTGTTTCCGATACCGTCGTTGAAAAAAATTTTCCT
TTTAAATTTATTACCAGTCTCCTTAAAAGTTGACCACATCGCTAAAGGTT
GATAGCTACATTGTTACTTTTTCGAAGCGGGCTACGCGGCTTTTTGCGCA
ATGCAATTGGTTCTTTTCGCATGACGACGGGCTTACACTGGCCAGAGTTG
CCCGTCGTTAGGAAAATTCATTGTAACGTCAAGGAAAATGAATAATGCGT
TGACATAATTTCTCTCATTTTTTATTTCTGACGTCAGAAATTATAACAAT
TTTTTATCTCTTTTCGCTTGATTTTCGCTTTATTTCGCTATTTTTCTGAT
TAAAGCGCTAAAAAATCAATAGAAACTGAAGGAAACGGTTAACAAATACA
ATAATGACCGGTTAGTGAGGGCTGTACTGAGAAATATTACCCGAGGTCAA
GTAACGACCAAGCTAAGTGAATTTTTTAATATTCTTTATTATAGGTTACT
TTAACTTTAGAAGTGGATAAACTTGATTTAACTAAAGATGCAAACCAGAA
GGTACACAGGAACAATGTTCATTCTAGAATACTTTTATTCTTACCCATTC
ATTTGCAATTTTTCAATTAAAAATCCTAAAAAGATTTAAATAATTTTTAA
TAAATTTGAAAGAATTTAATAGAAAATTTTCACATCTACAACATTTTACT
GCCATAAAATTCACCTTAAAAAGTAATACTTCAGCTTGGAAAATCTTCTT
TGTCCTTTTAAGTCGACTGACCACCAAATAAGTGAGGATAACACAAGTGA
GACTGACGCAGAAGATTCAATAGACAAAGAAAACGAAGAAACAAAGGTTT
TCAGTATTCTTAAAGCTCTTGTTAGCTCGGCAAGGGCTATCATATAGAAG
CAATTTTTTTTATTTTTGATGACTTTCAAAAGGTATTCTACAGTAATAAA
GACAGCAGAGTAGTATACAGTACATAATACGATATTCATAAAAGATTGAT
CTTTTATCTTTTCCATCCTTTTAAGACGACTGAGCACCAAATAAGTGACG
ATAATGCAAGTGAANATTTTTTCATTTTTGATGACTTTCAAAAGGTAATA
AAGACAGTAGAGTAGTATACAGTACATAATACGATATTCATAAAAGATTG
ATCTTTTATCTTTTCCATCCTTTTAAGACGACTGAGCACCAAATAAGTGA
CGATAATGCAAGTGAAATATACGCAGAAGATTCAAGTGAAGAAATAGAAA
AGACAGAGGTTTTTACTCAAATTATAATGATTTCCTTTCTTTCTTTTTAA
TTTCAATAATCCTTATAAAAACTCAAAAACCCACTAAAAACAAAAAACAA
GAGTGCAAGATTTGCAATACAATCCGAACAGTATCTCAAACTTAATTCCT
TTTGAAATTTTATTAGACTGGGACTCGAAAAAGATTCAAATTCACATTGA
AGGAAGAAACGCCAATAGACACCAAAGTCAGGCGGATAGAACGACTAAAA
AGAATAAATGGACAGCAAGCGAATACAATTGAGCAACTGAAAGAGAAAAA
TGCATCTCTAACCCTTCGAAACGCTGCCTTCACCCGTTTGAAGATAATAG
AACAGCTAGGAGAAAGGCGCTCTACTTTAATGGTAGACGCCTCACTTTTT
TCTAATACTTTCCATGCTGGTGATGCCATATTACAACAAGAAGATTCCGA
TTTGCTCGACCCCTCCACTTTTGAAGGGTTGGAAGGAAAGATGTTGATTC
CTGGTCTGTTTTGCTTTGCCAAAAAAGTCACTCTCTCCAACGGAGAATCT
GTTGTGCTGAAAACACATAAGCCAGAGAGTTTCGGTCTTCAGAGCTTAGC
CGTCCTAAGTCACGAACATCGTCTCCTAAAGTTTGTTGGAAGCCACGCAA
ATTTGGTTTCGACAGTTGGTTTGGTCCCCACAAACGGGATATTTGCTCAT
GTCATGAAATTTGAGTATGGCATGAGTCTCTTTGAAATGTCACAAAAATC
TATTTCCATAATTTCTATCTCAAATTTCAAATCCATCATCGAGGGAGTCG
CTGATGGACTAAATTTTTTGTTTGATAAAGGGGTCATCCATAACCATCTT
ATTACTGACAACGTTATTGTTAGAGATGGTTCCCCTAGAATTGTTGGGTT
TACGTTTTCATGCAGGGTGTATTCCACCAAAAACAATGTACAAGAAGTCT
TAAAAAAGTTCCAGGGTTCAAATCATTTGGCTCCCGAACTATACAACGGG
TCTTGTGCTAGTTATTCGACTGATGTTTATGCGTTTGGTGTGCTAGTACA
AAGCATCTTAAAAATGAGATTCGGCTTTACAATGAACACAACCTTCAAGT
CAAGAGTTGACTGTTATGCTGACAGCTGTCTGTATACGGCAGACCTAAGG
CCACCGCACAAGTTTCTGGCTTCGAAAACAAAACGAATGCTATATTACAA
AATTTAATATTAGATATGTATTTTCCTGATTCCTTCTTAAGGCTATAAGT
AGTAATTCATCATTCCTGCATAACTCGAAAATTTTCTTGAGAAAATGTTG
CTACCTTTTTTAGATCCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015052XLOC_015052Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026802-exon-sc0000587-1575043694:194133..194170TCONS_00026802-exon-sc0000587-1575043694:194133..194170Clytia hemisphaericaexon
TCONS_00026802-exon-sc0000587-1575043694:193338..193441TCONS_00026802-exon-sc0000587-1575043694:193338..193441Clytia hemisphaericaexon
TCONS_00026802-exon-sc0000587-1575043694:193021..193107TCONS_00026802-exon-sc0000587-1575043694:193021..193107Clytia hemisphaericaexon
TCONS_00026802-exon-sc0000587-1575043694:192370..192426TCONS_00026802-exon-sc0000587-1575043694:192370..192426Clytia hemisphaericaexon
TCONS_00026802-exon-sc0000587-1575043694:192075..192158TCONS_00026802-exon-sc0000587-1575043694:192075..192158Clytia hemisphaericaexon
TCONS_00026802-exon-sc0000587-1575043694:191663..191743TCONS_00026802-exon-sc0000587-1575043694:191663..191743Clytia hemisphaericaexon
TCONS_00026802-exon-sc0000587-1575043694:190351..191504TCONS_00026802-exon-sc0000587-1575043694:190351..191504Clytia hemisphaericaexon
TCONS_00026802-exon-sc0000587-1510915933:194133..194170TCONS_00026802-exon-sc0000587-1510915933:194133..194170Clytia hemisphaericaexon
TCONS_00026802-exon-sc0000587-1510915933:193338..193441TCONS_00026802-exon-sc0000587-1510915933:193338..193441Clytia hemisphaericaexon
TCONS_00026802-exon-sc0000587-1510915933:193021..193107TCONS_00026802-exon-sc0000587-1510915933:193021..193107Clytia hemisphaericaexon
TCONS_00026802-exon-sc0000587-1510915933:192370..192426TCONS_00026802-exon-sc0000587-1510915933:192370..192426Clytia hemisphaericaexon
TCONS_00026802-exon-sc0000587-1510915933:192075..192158TCONS_00026802-exon-sc0000587-1510915933:192075..192158Clytia hemisphaericaexon
TCONS_00026802-exon-sc0000587-1510915933:191663..191743TCONS_00026802-exon-sc0000587-1510915933:191663..191743Clytia hemisphaericaexon
TCONS_00026802-exon-sc0000587-1510915933:190351..191504TCONS_00026802-exon-sc0000587-1510915933:190351..191504Clytia hemisphaericaexon
TCONS_00026802-exon-sc0000587-1491911889:194133..194170TCONS_00026802-exon-sc0000587-1491911889:194133..194170Clytia hemisphaericaexon
TCONS_00026802-exon-sc0000587-1491911889:193338..193441TCONS_00026802-exon-sc0000587-1491911889:193338..193441Clytia hemisphaericaexon
TCONS_00026802-exon-sc0000587-1491911889:193021..193107TCONS_00026802-exon-sc0000587-1491911889:193021..193107Clytia hemisphaericaexon
TCONS_00026802-exon-sc0000587-1491911889:192370..192426TCONS_00026802-exon-sc0000587-1491911889:192370..192426Clytia hemisphaericaexon
TCONS_00026802-exon-sc0000587-1491911889:192075..192158TCONS_00026802-exon-sc0000587-1491911889:192075..192158Clytia hemisphaericaexon
TCONS_00026802-exon-sc0000587-1491911889:191663..191743TCONS_00026802-exon-sc0000587-1491911889:191663..191743Clytia hemisphaericaexon
TCONS_00026802-exon-sc0000587-1491911889:190351..191504TCONS_00026802-exon-sc0000587-1491911889:190351..191504Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000587supercontigsc0000587:190351..194170 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.429942	0	1.01818	0.645744	0	0	0	0	3.2421e-09	6.04766e-08	4.42827e-10	0.143359	2.12238e-05	0	0	0	0.00652324	1.45055e-09	0.154529	0	0.192593	0.47473	0	0	0	0	1.47167e-06	0	0.163421	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026802 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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